Publications

Accepted or to appear

Papers in international journals

  1. M.U. Dalmış, A. Gubern-Merida, S. Vreemann, P. Bult, N. Karssemeijer, R. Mann and J. Teuwen. "Artificial Intelligence Based Classification of Breast Lesions Imaged With a Multi-Parametric Breast MRI Protocol With ultrafast DCE-MRI, T2 and DWI", Investigative Radiology.

  2. B. van Ginneken. "Deep Learning for Triage of Chest Radiographs: Should Every Institution Train Its Own System?", Radiology. PDF DOI PMID 30422089

  3. M. Tammemagi, A.J. Ritchie, S. Atkar-Khattra, B. Dougherty, C. Sanghera, J.R. Mayo, R. Yuan, D. Manos, A.M. McWilliams, H. Schmidt, M. Gingras, S. Pasian, L. Stewart, S. Tsai, J.M.Seely, P. Burrowes, R. Bhatia, E.A.Haider, C. Boylan, C. Jacobs, B. van Ginneken, M.-S. Tsao, S. Lam and the Pan-Canadian Early Detection of Lung Cancer Study Group. "Predicting Malignancy Risk of Screen Detected Lung Nodules – Mean Diameter or Volume", Journal of Thoracic Oncology. Abstract DOI

  4. S.G. Armato, H. Huisman, K. Drukker, L. Hadjiiski, J.S. Kirby, N. Petrick, G. Redmond, M.L. Giger, K. Cha, A. Mamonov, J. Kalpathy-Cramer and K. Farahani. "The PROSTATEx Challenges for Computerized Classification of Prostate Lesions from Multi-Parametric Magnetic Resonance Images", Journal of Medical Imaging. Abstract

  5. S. Balocco, F. Ciompi, J. Rigla, X. Carrillo, J. Mauri and P. Radeva. "Assessment Of Intra-coronary Stent Location And Extension In Intravascular Ultrasound Sequences.", Medical physics. Abstract/PDF DOI PMID 30383304

  6. P. Bandi, O. Geessink, Q. Manson, M. van Dijk, M. Balkenhol, M. Hermsen, B.E. Bejnordi, B. Lee, K. Paeng, A. Zhong, Q. Li, F.G. Zanjani, S. Zinger, K. Fukuta, D. Komura, V. Ovtcharov, S. Cheng, S. Zeng, J. Thagaard, A.B. Dahl, H. Lin, H. Chen, L. Jacobsson, M. Hedlund, M. Cetin, E. Halici, H. Jackson, R. Chen, F. Both, J. Franke, H. Kusters-Vandevelde, W. Vreuls, P. Bult, B. van Ginneken, J. van der Laak and G. Litjens. "From detection of individual metastases to classification of lymph node status at the patient level: the CAMELYON17 challenge", IEEE Transactions on Medical Imaging. Abstract/PDF DOI

  7. R.J. Becks, R. Manniesing, J. Vister, S. Pegge, S.C. Steens, E.J. van Dijk, M. Prokop and F.J. Meijer. "Brain CT Perfusion Improves Intracranial Vessel Occlusion Detection on CT Angiography", Journal of Neuroradiology. Abstract/PDF DOI PMID 29625153

  8. S.J. van Riel, C. Jacobs, E.T. Scholten, R. Wittenberg, M.M. Winkler Wille, B. de Hoop, R. Sprengers, O.M. Mets, B. Geurts, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Observer variability for Lung-RADS categorisation of lung cancer screening CTs: impact on patient management", European Radiology. Abstract/PDF DOI PMID 30066248

  9. D. Tellez, M. Balkenhol, I. Otte-Holler, R. van de Loo, R. Vogels, P. Bult, C. Wauters, W. Vreuls, S. Mol, N. Karssemeijer, G. Litjens, J. van der Laak and F. Ciompi. "Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks", IEEE Transactions on Medical Imaging. Abstract/PDF DOI PMID 29994086


Papers in conference proceedings

  1. M. Caballo, T. Jonas, R. Mann and I. Sechopolous. "Breast parenchyma analysis and classification for breast masses detection using texture feature descriptors and neural networks in dedicated breast CT images", in: Medical Imaging of SPIE. PDF

  2. N. Moriakov, M.R. Michielsen, Koen, J. Adler, I. Sechopolous and J. Teuwen. "Deep learning framework for digital breast tomosynthesis reconstruction", in: Medical Imaging of SPIE.

  3. J. van Vugt, E. Marchiori, R. Mann, A. Gubern-Mérida, N. Moriakov and J. Teuwen. "Vendor-independent soft tissue lesion detection using weakly supervised and unsupervised adversarial domain adaptation", in: Medical Imaging of SPIE.


2019

Theses

  1. T. van den Heuvel. "Automated low-cost ultrasound: improving antenatal care in resource-limited settings", PhD thesis, The Radbouduniversity, Nijmegen, The Netherlands, 2019. Abstract/PDF


2018

Papers in international journals

  1. G. Chlebus, A. Schenk, J.H. Moltz, B. van Ginneken, H.K. Hahn and H. Meine. "Automatic liver tumor segmentation in CT with fully convolutional neural networks and object-based postprocessing", Nature Scientific Reports 2018;8:15497. Abstract/PDF DOI PMID 30341319

  2. Z. Bian, J.-P. Charbonnier, J. Liu, D. Zhao, D.A. Lynch and B. van Ginneken. "Small airway segmentation in thoracic computed tomography scans: a machine learning approach", Physics in Medicine and Biology 2018;63:155024. Abstract/PDF DOI PMID 29995646

  3. R.C. Koesoemadinata, K. Kranzer, R. Livia, N. Susilawati, J. Annisa, N.N.M. Soetedjo, R. Ruslami, R. Philipsen, B. van Ginneken, R.D. Soetikno, R. van Crevel, B. Alisjahbana and P.C. Hill. "Computer-assisted chest radiography reading for tuberculosis screening in people living with diabetes mellitus", International Journal of Tuberculosis and Lung Disease 2018;22:1088-1094. Abstract/PDF DOI PMID 30092877

  4. S.M.A. Zaidi, S.S. Habib, B. Van Ginneken, R.A. Ferrand, J. Creswell, S. Khowaja and A. Khan. "Evaluation of the diagnostic accuracy of Computer-Aided Detection of tuberculosis on Chest radiography among private sector patients in Pakistan", Nature Scientific Reports 2018;8:12339. Abstract/PDF DOI PMID 30120345

  5. K. Chung, O.M. Mets, P.K. Gerke, C. Jacobs, A.M. den Harder, E.T. Scholten, M. Prokop, P.A. de Jong, B. van Ginneken and C.M. Schaefer-Prokop. "Brock malignancy risk calculator for pulmonary nodules: validation outside a lung cancer screening population", Thorax 2018;73:857-863. Abstract/PDF DOI PMID 29777062

  6. O.M. Mets, K. Chung, P. Zanen, E.T. Scholten, W.B. Veldhuis, B. van Ginneken, M. Prokop, C.M. Schaefer-Prokop and P.A. de Jong. "In vivo growth of 60 non-screening detected lung cancers: a computed tomography study", European Respiratory Journal 2018;51:1702183. Abstract/PDF DOI PMID 29650547

  7. M.T.H. Oei, F.J.A. Meijer, J.-J. Mordang, E.J. Smit, A.J. Idema, B.M. Goraj, H.O.A. Laue, M. Prokop and R. Manniesing. "Observer Variability of Reference Tissue Selection for Relative Cerebral Blood Volume Measurements in Glioma Patients", European Radiology 2018;28:3902-3911. Abstract/PDF DOI PMID 29572637

  8. M. Meijs, F.-E. de Leeuw, H.D. Boogaarts, R. Manniesing and F.J.A. Meijer. "Circle of Willis collateral flow in carotid artery occlusion is depicted by 4D-CTA", World Neurosurgery 2018;114:421-426. Abstract/PDF DOI PMID 29530689

  9. F.G. Venhuizen, B. van Ginneken, B. Liefers, F. van Asten, V. Schreur, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sánchez. "A Deep Learning Approach for Detection and Quantification of Intraretinal Cystoid Fluid in Multivendor Optical Coherence Tomography", Biomedical Optics Express 2018;9(4):1545-1569. Abstract/PDF DOI

  10. K. Chung, F. Ciompi, J.M. Scholten, E. Th. Goo, M. Prokop, C. Jacobs, B. van Ginneken and C.M. Schaefer-Prokop. "Visual Discrimination of Screen-detected Persistent from Transient Subsolid Nodules: an Observer Study", PLoS One 2018;13:e0191874. Abstract/PDF DOI PMID 29438443

  11. S. Vreemann, A. Gubern-Mérida, C. Borelli, P. Bult, N. Karssemeijer and R.M. Mann. "The correlation of background parenchymal enhancement in the contralateral breast with patient and tumor characteristics of MRI-screen detected breast cancers", PLoS One 2018;13:e0191399. Abstract/PDF DOI PMID 29351560

  12. J.-P. Charbonnier, K. Chung, E.T. Scholten, E.M. van Rikxoort, C. Jacobs, N. Sverzellati, M. Silva, U. Pastorino, B. van Ginneken and F. Ciompi. "Automatic segmentation of the solid core and enclosed vessels in subsolid pulmonary nodules", Nature Scientific Reports 2018;8:646. Abstract/PDF DOI PMID 29330380

  13. H. van der Holst, A. Tuladhar, V. Zerbi, I. van Uden, K. de Laat, E. van Leijsen, M. Ghafoorian, B. Platel, M. Bergkamp, A. van Norden and D. Norris. "White matter changes and gait decline in cerebral small vessel disease", NeuroImage: Clinical 2018;17:731-738. Abstract/PDF DOI PMID 29270357

  14. A. Boueiz, Y. Chang, M.H. Cho, G.R. Washko, R. San José Estépar, R.P. Bowler, J.D. Crapo, D.L. DeMeo, J.G. Dy, E.K. Silverman, P.J. Castaldi and COPDGene Investigators. "Lobar Emphysema Distribution Is Associated With 5-Year Radiological Disease Progression", Chest 2018;153(1):65-76. Abstract/PDF DOI PMID 28943279

  15. O.M. Mets, K. Chung, E.T. Scholten, W.B. Veldhuis, M. Prokop, B. van Ginneken, C.M. Schaefer-Prokop and P.A. de Jong. "Incidental perifissural nodules on routine chest computed tomography: lung cancer or not?", European Radiology 2018:1095-1101. Abstract/PDF DOI PMID 28986629

  16. A. Schreuder, B. van Ginneken, E.T. Scholten, C. Jacobs, M. Prokop, N. Sverzellati, S.R. Desai, A. Devaraj and C.M. Schaefer-Prokop. "Classification of CT Pulmonary Opacities as Perifissural Nodules: Reader Variability", Radiology 2018;288(3):867-875. Abstract/PDF DOI PMID 29969076

  17. A. Schreuder, C. Schaefer-Prokop, E. Scholten, C. Jacobs, M. Prokop and B. van Ginneken. "Lung cancer risk to personalise annual and biennial follow-up computed tomography screening", Thorax 2018;73(7):626-633. Abstract/PDF DOI PMID 29602813

  18. G.E. Humpire Mamani, A. Setio, B. van Ginneken and C. Jacobs. "Efficient organ localization using multi-label convolutional neural networks in thorax-abdomen CT scans", Physics in Medicine and Biology 2018;63(8):085003. Abstract/PDF DOI PMID 29512516

  19. N. Lessmann, B. van Ginneken, M. Zreik, P.A. de Jong, B.D. de Vos, M.A. Viergever and I. Išgum. "Automatic calcium scoring in low-dose chest CT using deep neural networks with dilated convolutions", IEEE Transactions on Medical Imaging 2018;37(2):615-625. Abstract/PDF DOI arXiv PMID 29408789

  20. A. Baidoshvili, A. Bucur, J. van Leeuwen, J. van der Laak, P. Kluin and P.J. van Diest. "Evaluating the benefits of digital pathology implementation: time savings in laboratory logistics.", Histopathology 2018;73:784-794. Abstract/PDF DOI PMID 29924891

  21. C. Balta, R.W. Bouwman, I. Sechopoulos, M.J.M. Broeders, N. Karssemeijer, R.E. van Engen and W.J.H. Veldkamp. "A model observer study using acquired mammographic images of an anthropomorphic breast phantom", Medical physics 2018;45:655-665. Abstract/PDF DOI PMID 29193129

  22. M.I. Bergkamp, J.G.J. Wissink, E.M.C. van Leijsen, M. Ghafoorian, D.G. Norris, E.J. van Dijk, B. Platel, A.M. Tuladhar and F.-E. de Leeuw. "Risk of Nursing Home Admission in Cerebral Small Vessel Disease.", Stroke 2018;49:2659-2665. Abstract DOI PMID 30355195

  23. A. Bria, C. Marrocco, L.R. Borges, M. Molinara, A. Marchesi, J.-J. Mordang, N. Karssemeijer and F. Tortorella. "Improving the Automated Detection of Calcifications using Adaptive Variance Stabilization", IEEE Transactions on Medical Imaging 2018;37(8):1857-1864. Abstract/PDF DOI PMID 29994062

  24. M.U. Dalmış, S. Vreemann, T. Kooi, R.M. Mann, N. Karssemeijer and A. Gubern-Mérida. "Fully automated detection of breast cancer in screening MRI using convolutional neural networks", Journal of medical imaging (Bellingham, Wash.) 2018;5:014502. Abstract/PDF DOI PMID 29340287

  25. B. Ehteshami Bejnordi, M. Mullooly, R.M. Pfeiffer, S. Fan, P.M. Vacek, D.L. Weaver, S. Herschorn, L.A. Brinton, B. van Ginneken, N. Karssemeijer, A.H. Beck, G.L. Gierach, J.A.W.M. van der Laak and M.E. Sherman. "Using deep convolutional neural networks to identify and classify tumor-associated stroma in diagnostic breast biopsies", Modern Pathology 2018;31(10):1502-1512. Abstract/PDF DOI PMID 29899550

  26. T.L.A. van den Heuvel, D. de Bruijn, C.L. de Korte and B. van Ginneken. "Automated measurement of fetal head circumference using 2D ultrasound images", PLoS One 2018;13(8). Abstract/PDF DOI

  27. T.L.A. van den Heuvel, D. de Bruijn, D. Moens-van de Moesdijk, A. Beverdam, B. van Ginneken and C.L. de Korte. "Comparison Study of Low-Cost Ultrasound Devices for Estimation of Gestational Age in Resource-Limited Countries", Ultrasound in Medicine and Biology 2018;44(11):2250-2260. Abstract/PDF DOI PMID 30093339

  28. S.V. de Lange, M.F. Bakker, E.M. Monninkhof, P.H.M. Peeters, P.K. de Koekkoek-Doll, R.M. Mann, M.J.C.M. Rutten, R.H.C. Bisschops, J. Veltman, K.M. Duvivier, M.B.I. Lobbes, H.J. de Koning, N. Karssemeijer, R.M. Pijnappel, W.B. Veldhuis and C.H. van Gils. "Reasons for (non)participation in supplemental population-based MRI breast screening for women with extremely dense breasts", Clinical radiology 2018;73(8):759e1-759e9. Abstract/PDF DOI PMID 29759590

  29. G. Litjens, P. Bandi, B. Ehteshami Bejnordi, O. Geessink, M. Balkenhol, P. Bult, A. Halilovic, M. Hermsen, R. van de Loo, R. Vogels, Q. Manson, N. Stathonikos, A. Baidoshvili, P. van Diest, C. Wauters, M. van Dijk and J. van der Laak. "1399 H&E-stained sentinel lymph node sections of breast cancer patients: the CAMELYON dataset", GigaScience 2018;7:1-8. Abstract/PDF DOI PMID 29860392

  30. J. Melendez, L. Hogeweg, C.I. Sánchez, R.H.H.M. Philipsen, R.W. Aldridge, A. Hayward, I. Abubakar, B. van Ginneken and A. Story. "Accuracy of an automated system for tuberculosis detection on chest radiographs in high-risk screening", International Journal of Tuberculosis and Lung Disease 2018;22(5):567-571. Abstract/PDF DOI PMID 29663963

  31. N. Moriakov. "Fluctuations of ergodic averages for actions of groups of polynomial growth.", Studia Mathematica 2018;240(3):255-273. PDF DOI

  32. A. Rodriguez-Ruiz, A. Gubern-Merida, M. Imhof-Tas, S. Lardenoije, A.J.T. Wanders, I. Andersson, S. Zackrisson, K. Lång, M. Dustler, N. Karssemeijer, R.M. Mann and I. Sechopoulos. "One-view digital breast tomosynthesis as a stand-alone modality for breast cancer detection: do we need more?", European radiology 2018;28:1938-1948. Abstract DOI PMID 29230524

  33. A. Rodriguez-Ruiz, J. Teuwen, S. Vreemann, R.W. Bouwman, R.E. van Engen, N. Karssemeijer, R.M. Mann, A. Gubern-Merida and I. Sechopoulos. "New reconstruction algorithm for digital breast tomosynthesis: better image quality for humans and computers.", Acta radiologica (Stockholm, Sweden : 1987) 2018;59:1051-1059. Abstract/PDF DOI PMID 29254355

  34. V. Schreur, A. Domanian, B. Liefers, F.G. Venhuizen, B.J. Klevering, C.B. Hoyng, E.K. de Jong and T. Theelen. "Morphological and topographical appearance of microaneurysms on optical coherence tomography angiography", British Journal of Ophthalmology 2018. Abstract/PDF DOI PMID 29925511

  35. M. Silva, M. Prokop, C. Jacobs, G. Capretti, N. Sverzellati, F. Ciompi, B. van Ginneken, C.M. Schaefer-Prokop, C. Galeone, A. Marchianò and U. Pastorino. "Long-term Active Surveillance of Screening Detected Subsolid Nodules is a Safe Strategy to Reduce Overtreatment", Journal of Thoracic Oncology 2018;13:1454-1463. Abstract/PDF DOI PMID 30026071

  36. M. Silva, C.M. Schaefer-Prokop, C. Jacobs, G. Capretti, F. Ciompi, B. van Ginneken, U. Pastorino and N. Sverzellati. "Detection of Subsolid Nodules in Lung Cancer Screening: Complementary Sensitivity of Visual Reading and Computer-Aided Diagnosis.", Investigative Radiology 2018;53(8):441-449. Abstract/PDF DOI PMID 29543693

  37. W. Venderink, M. de Rooij, M.J. Sedelaar, H.J. Huisman and J.J. Futterer. "Elastic versus rigid image registration in MRI-TRUS fusion prostate biopsy: a systematic review and meta-analysis", European Urology Focus 2018;4:219-227. Abstract/PDF DOI PMID 28753777

  38. S. Vreemann, A. Gubern-Merida, S. Lardenoije, P. Bult, N. Karssemeijer, K. Pinker and R.M. Mann. "The frequency of missed breast cancers in women participating in a high-risk MRI screening program.", Breast cancer research and treatment 2018;169:323-331. Abstract/PDF DOI PMID 29383629

  39. S. Vreemann, A. Gubern-Mérida, M.S. Schlooz-Vries, P. Bult, C.H. van Gils, N. Hoogerbrugge, N. Karssemeijer and R.M. Mann. "Influence of Risk Category and Screening Round on the Performance of an MR Imaging and Mammography Screening Program in Carriers of the BRCA Mutation and Other Women at Increased Risk.", Radiology 2018;286:443-451. Abstract DOI PMID 29040037

  40. S. Vreemann, J.C.M. van Zelst, M. Schlooz-Vries, P. Bult, N. Hoogerbrugge, N. Karssemeijer, A. Gubern-Mérida and R.M. Mann. "The added value of mammography in different age-groups of women with and without BRCA mutation screened with breast MRI.", Breast cancer research : BCR 2018;20:84. Abstract DOI PMID 30075794

  41. J.O.P. Wanders, C.H. van Gils, N. Karssemeijer, K. Holland, M. Kallenberg, P.H.M. Peeters, M. Nielsen and M. Lillholm. "The combined effect of mammographic texture and density on breast cancer risk: a cohort study.", Breast cancer research : BCR 2018;20:36. Abstract DOI PMID 29720220

  42. J.C.M. van Zelst, T. Tan, P. Clauser, A. Domingo, M.D. Dorrius, D. Drieling, M. Golatta, F. Gras, M. de Jong, R. Pijnappel, M.J.C.M. Rutten, N. Karssemeijer and R.M. Mann. "Dedicated computer-aided detection software for automated 3D breast ultrasound; an efficient tool for the radiologist in supplemental screening of women with dense breasts.", European Radiology 2018;28:2996-3006. Abstract/PDF DOI PMID 29417251

  43. J.C.M. van Zelst, S. Vreemann, H.-J. Witt, A. Gubern-Merida, M.D. Dorrius, K. Duvivier, S. Lardenoije-Broker, M.B.I. Lobbes, C. Loo, W. Veldhuis, J. Veltman, D. Drieling, N. Karssemeijer and R.M. Mann. "Multireader Study on the Diagnostic Accuracy of Ultrafast Breast Magnetic Resonance Imaging for Breast Cancer Screening", Investigative Radiology 2018;53(10):579-586. Abstract/PDF DOI PMID 29944483


Preprints

  1. G. Aresta, C. Jacobs, T. Araújo, A. Cunha, I. Ramos, B. van Ginneken and A. Campilho. "iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network", arXiv:1811.12789 2018. Abstract

  2. D. Belli, S. Hu, E. Sogancioglu and B. van Ginneken. "Chest X-Rays Image Inpainting with Context Encoders", arXiv:1812.00964 2018. Abstract

  3. W. Bulten, P. Bándi, J. Hoven, R. van de Loo, J. Lotz, N. Weiss, J. van der Laak, B. van Ginneken, C.H. van de Kaa and G. Litjens. "Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard", arXiv:1808.05883 2018. Abstract

  4. A. de Gelder and H. Huisman. "Autoencoders for Multi-Label Prostate MR Segmentation", arXiv:1806.08216 2018. Abstract

  5. S. Kazeminia, C. Baur, A. Kuijper, B. van Ginneken, N. Navab, S. Albarqouni and A. Mukhopadhyay. "GANs for Medical Image Analysis", arXiv:1809.06222 2018. Abstract

  6. L. Maier-Hein, M. Eisenmann, A. Reinke, S. Onogur, M. Stankovic, P. Scholz, T. Arbel, H. Bogunovic, A.P. Bradley, A. Carass, C. Feldmann, A.F. Frangi, P.M. Full, B. van Ginneken, A. Hanbury, K. Honauer, M. Kozubek, B.A. Landman, K. März, O. Maier, K. Maier-Hein, B.H. Menze, H. Müller, P.F. Neher, W. Niessen, N. Rajpoot, G.C. Sharp, K. Sirinukunwattana, S. Speidel, C. Stock, D. Stoyanov, A.A. Taha, F. van der Sommen, C.-W. Wang, M.-A. Weber, G. Zheng, P. Jannin and A. Kopp-Schneider. "Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions", arXiv:1806.02051 2018. Abstract

  7. G. Mooij, I. Bagulho and H. Huisman. "Automatic segmentation of prostate zones", arXiv:1806.07146 2018. Abstract

  8. T. de Moor, A. Rodriguez-Ruiz, R. Mann and J. Teuwen. "Automated soft tissue lesion detection and segmentation in digital mammography using a u-net deep learning network", arXiv:1802.06865 2018. Abstract

  9. H. Pinckaers and G. Litjens. "Training convolutional neural networks with megapixel images", arXiv:1804.05712 2018.

  10. E. Sogancioglu, S. Hu, D. Belli and B. van Ginneken. "Chest X-ray Inpainting with Deep Generative Models", arXiv:1809.01471 2018. Abstract

  11. J. Teuwen and P. Urbach. "On Maximum Focused Electric Energy in Bounded Regions", arXiv:1801.02450 2018.

  12. M. Veta, Y.J. Heng, N. Stathonikos, B.E. Bejnordi, F. Beca, T. Wollmann, K. Rohr, M.A. Shah, D. Wang, M. Rousson, M. Hedlund, D. Tellez, F. Ciompi, E. Zerhouni, D. Lanyi, M. Viana, V. Kovalev, V. Liauchuk, H.A. Phoulady, T. Qaiser, S. Graham, N. Rajpoot, E. Sjöblom, J. Molin, K. Paeng, S. Hwang, S. Park, Z. Jia, E.I.-C. Chang, Y. Xu, A.H. Beck, P.J. van Diest and J.P.W. Pluim. "Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge", arXiv:1807.08284 2018. Abstract


Papers in conference proceedings

  1. G. Aresta, T. Araujo, C. Jacobs, B. van Ginneken, A. Cunha, I. Ramos and A. Campilho. "Towards an automatic lung cancer screening system in low dose computed tomography", in: MICCAI Workshop: Thoracic Image Analysis, volume 11040 of Lecture Notes in Computer Science, 2018. Abstract/PDF DOI

  2. D. Tellez, M. Balkenhol, N. Karssemeijer, G. Litjens, J. van der Laak and F. Ciompi. "H&E stain augmentation improves generalization of convolutional networks for histopathological mitosis detection", in: Medical Imaging, volume 10581 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  3. D. Geijs, M. Intezar, J. van der Laak and G. Litjens. "Automatic color unmixing of IHC stained whole slide images", in: Medical Imaging, volume 10581 of SPIE, 2018. Abstract/PDF DOI

  4. M. Ghafoorian, J. Teuwen, R. Manniesing, F.-E. de Leeuw, B. van Ginneken, N. Karssemeijer and B. Platel. "Student Beats the Teacher: Deep Neural Networks for Lateral Ventricles Segmentation in Brain MR", in: Medical Imaging, volume 10574, 2018, page 105742U. Abstract/PDF DOI arXiv

  5. M. Meijs and R. Manniesing. "Artery and Vein Segmentation of the Cerebral Vasculature in 4D CT using a 3D Fully Convolutional Neural Network", in: Medical Imaging, volume 10575 of SPIE, 2018, page 105751Q. Abstract/PDF DOI

  6. A. Patel and R. Manniesing. "A convolutional neural network for intracranial hemorrhage detection in non-contrast CT", in: Medical Imaging, volume 10575 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  7. N. Lessmann, B. van Ginneken and I. Išgum. "Iterative convolutional neural networks for automatic vertebra identification and segmentation in CT images", in: Medical Imaging, volume 10574 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  8. J.-M. Bokhorst, L. Rijstenberg, D. Goudkade, I. Nagtegaal, J. Laak and F. Ciompi. "Automatic Detection of Tumor Budding in Colorectal Carcinoma with Deep Learning", in: Computational Pathology and Ophthalmic Medical Image Analysis, 2018. Abstract DOI

  9. W. Bulten, C.A.H. vandeKaa, J. van der Laak and G.J.S. Litjens. "Automated segmentation of epithelial tissue in prostatectomy slides using deep learning", in: Medical Imaging, volume 10581 of SPIE, 2018, page 105810S. Abstract/PDF DOI

  10. W. Bulten and G. Litjens. "Unsupervised Prostate Cancer Detection on H&E using Convolutional Adversarial Autoencoders", in: Medical Imaging with Deep Learning, 2018. Abstract arXiv

  11. E. Gibson, Yipeng, H.N. Ghavami, H.U. Ahmed, C. Moore, M. Emberton, H. Huisman and D. Barratt. "Inter-site variability in prostate segmentation accuracy using deep learning", in: Medical Image Computing and Computer-Assisted Intervention, 2018. Abstract URL

  12. C. Gonzalez-Gonzalo, B. Liefers, B. van Ginneken and C.I. Sanchez. "Improving weakly-supervised lesion localization with iterative saliency map refinement", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  13. Y.B. Hagos, A. Gubern-Mérida and J. Teuwen. "Improving Breast Cancer Detection using Symmetry Information with Deep Learning", in: Breast Image Analysis (BIA), 2018. PDF

  14. S.C. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Stacked Bidirectional Convolutional LSTMs for 3D Non-contrast CT Reconstruction from Spatiotemporal 4D CT", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  15. S.C. van de Leemput, J. Teuwen and R. Manniesing. "MemCNN: a Framework for Developing Memory Efficient Deep Invertible Networks", in: International Conference on Learning Representations, 2018. Abstract/PDF URL

  16. N. Lessmann, B. van Ginneken, P.A. de Jong and I. Išgum. "Iterative fully convolutional neural networks for automatic vertebra segmentation", in: Medical Imaging with Deep Learning, 2018. Abstract arXiv

  17. T. de Moor, A. Rodriguez-Ruiz, R. Mann and J. Teuwen. "Automated soft tissue lesion detection and segmentation in digital mammography using a u-net deep learning network", in: International Workshop on Breast Imaging, 2018. Abstract/PDF

  18. M. van Rijthoven, Z. Swiderska-Chadaj, K. Seeliger, J. van der Laak and F. Ciompi. "You Only Look on Lymphocytes Once", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  19. A. Rodriguez-Ruiz, J. Teuwen, K. Chung, N. Karssemeijer, M. Chevalier, A. Gubern-Merida and I. Sechopoulos. "Pectoral muscle segmentation in breast tomosynthesis with deep learning", in: Medical Imaging, 2018. Abstract/PDF DOI

  20. K. Standvoss, T. Crijns, L. Goerke, D. Janssen, S. Kern, T. van Niedek, J. van Vugt, N.A. Burgos, E.J. Gerritse, J. Mol, D. van de Vooren, M. Ghafoorian, T.L. van den Heuvel and R. Manniesing. "Cerebral Microbleed Detection in Traumatic Brain Injury Patients using 3D Convolutational Neural Networks", in: Medical Imaging, volume 10575 of SPIE, 2018. Abstract/PDF DOI

  21. Z. Swiderska-Chadaj, H. Pinckaers, M. van Rijthoven, M. Balkenhol, M. Melnikova, O. Geessink, Q. Manson, G. Litjens, J. van der Laak and F. Ciompi. "Convolutional Neural Networks for Lymphocyte detection in Immunohistochemically Stained Whole-Slide Images", in: Medical Imaging with Deep Learning, 2018. Abstract URL

  22. D. Tellez, J. van der Laak and F. Ciompi. "Gigapixel Whole-Slide Image Classification Using Unsupervised Image Compression And Contrastive Training", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL


Abstracts

  1. B. van Ginneken. "Deep Machine Learning for Screening LDCT", in: Journal of Thoracic Oncology, 2018. Abstract/PDF

  2. K. Koschmieder, A. van der Eerden, B. van Ginneken and R. Manniesing. "Brain Extraction in Susceptibility-Weighted MR Images using Deep Learning", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract/PDF

  3. F.J. Meijer, P.W. Willems, M. Meijs and R. Manniesing. "Color-mapping visualization of 4D-CTA in neurovascular disease", in: European Society of Neuroradiology, 2018. Abstract/PDF

  4. M. Meijs, A. Patel, S.C. van de Leemput, B. van Ginneken, M. Prokop and R. Manniesing. "Fast, Robust and Accurate Segmentation of the Complete Cerebral Vasculature in 4D-CTA using Deep Learning", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract/PDF

  5. M. Hall, A.A.A. Setio, S. Sheridan, M. Sproule, M. Williams, E.T. Scholten, C. Jacobs, B. Van Ginneken and R.G.. "Computer aided detection (CAD) and scoring of lung nodules in a Scottish lung cancer screening programme", in: European Congress of Radiology, 2018. Abstract DOI

  6. A.W. van der Eerden, T.L. van den Heuvel, B.H. Geurts, B. Platel, T.V. Vyveree, L. van den Hauwee, T.M. Andriessen, B.M. Goraj and R. Manniesing. "Automatic versus human detection of traumatic cerebral microbleeds on susceptibility weighted imaging", in: European Congress of Radiology, 2018. Abstract

  7. S.C. van de Leemput, A. Patel and R. Manniesing. "Full Volumetric Brain Tissue Segmentation in Non-contrast CT using Memory Efficient Convolutional LSTMs", in: Medical Imaging meets NeurIPS, 2018. Abstract

  8. A. Schreuder, B. van Ginneken, E.T. Scholten, C. Jacobs, M. Prokop, N. Sverzellati, S.R. Desai, A. Devaraj and C.M. Schaefer-Prokop. "What is a perifissural nodule? Low inter-observer agreement in NLST data", in: European Societies of Cardiovascular Radiology and Thoracic Imaging joint meeting, 2018. Abstract

  9. A. Schreuder, C. Jacobs, L. Gallardo-Estrella, C.M. Schaefer-Prokop, W. Fukumoto, M. Prokop and B. van Ginneken. "Normalized emphysema score progression: An improved CT biomarker for mortality", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract

  10. A. Schreuder, C. Jacobs, N. Lessmann, E.T. Scholten, I. Isgum, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Improved Lung Cancer and Mortality Prediction Accuracy Using Survival Models Based on Semi-Automatic CT Image Measurements", in: World Conference on Lung Cancer, 2018. Abstract

  11. A. Schreuder, C.M. Schaefer-Prokop, E.T. Scholten, D. Lynch, J.-P. Charbonnier and C. Jacobs. "Perifissural nodule count as a biomarker for COPD GOLD stages and emphysema measurements?", in: European Societies of Cardiovascular Radiology and Thoracic Imaging Joint Meeting, 2018. Abstract

  12. E. Smeets, J. Teuwen, J. van der Laak, M. Gotthardt, F. Ciompi and E. Aarntzen. "Tumor heterogeneity as a PET-biomarker predicts overall survival of pancreatic cancer patients", in: European Society for Molecular Imaging, 2018. Abstract


Theses

  1. T.A. Ableef. "Malignancy estimation of Pulmonary Nodules using Multi-View Multi-Time Point Convolutional Neural Networks", Masters thesis, University of Girona (MAIA master program), 2018. Abstract/PDF

  2. C. Kamphuis. "Automatic Segmentation of Retinal Layers in Optical Coherence Tomography using Deep Learning Techniques", Masters thesis, Radboud Universiteit / Radboud UMC, 2018. PDF

  3. J. van Kleef. "Robust and accurate cerebral hemisphere segmentation in non-contrast CT using a 2.5D Dense U-Net", Masters thesis, Radboud University / Radboud UMC, 2018. Abstract/PDF

  4. K. Chung. "Malignancy risk estimation of subsolid nodules", PhD thesis, Radbouduniversity, Nijmegen, The Netherlands, 2018. Abstract/PDF URL

  5. M. Ghafoorian. "Machine Learning for Quantification of Small Vessel Disease Imaging Biomarkers", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2018. Abstract/PDF URL

  6. T. Kooi. "Computer aided diagnosis of breast cancer in mammography using deep neural networks", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2018. Abstract/PDF

  7. J.-J. Mordang. "Towards an independent observer of screening mammograms: detection of calcifications", PhD thesis, The Radbouduniversity, Nijmegen, The Netherlands, 2018. Abstract/PDF

  8. A.A.A. Setio. "Computer-aided diagnosis in thoracic CT scans for lung cancer screening", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2018. Abstract/PDF

  9. S. Vreemann. "Breast MRI for screening: evaluation of clinical practice and future perspectives", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2018. Abstract/PDF


Other publications

  1. D. Stoyanov, Z. Taylor, B. Kainz, G. Maicas, R. Beichel, A. Martel, L. Maier-Hein, B. Kanwal, T. Vercauteren, O. Ozan, G. Carneiro, A.P. Bradley, J. Nascimento, H. Min, M.S. Brown, C. Jacobs, B. Lassen-Schmidt, K. Mori, J. Petersen, R.S.J. Estépar, A. Schmidt-Richberg and C. Veiga. "Image Analysis for Moving Organ, Breast and Thoracic Images", 2018. Abstract/PDF DOI


2017

Papers in international journals

  1. B.E. Bejnordi, G. Zuidhof, M. Balkenhol, M. Hermsen, P. Bult, B. van Ginneken, N. Karssemeijer, G. Litjens and J. van der Laak. "Context-aware stacked convolutional neural networks for classification of breast carcinomas in whole-slide histopathology images", Journal of Medical Imaging 2017;4:044504. Abstract/PDF DOI PMID 29285517

  2. B. Ehteshami Bejnordi, M. Veta, P.J. van Diest, B. van Ginneken, N. Karssemeijer, G. Litjens, J.A.W.M. van der Laak, the CAMELYON16 Consortium, M. Hermsen, Q.F. Manson, M. Balkenhol, O. Geessink, N. Stathonikos, M.C. van Dijk, P. Bult, F. Beca, A.H. Beck, D. Wang, A. Khosla, R. Gargeya, H. Irshad, A. Zhong, Q. Dou, Q. Li, H. Chen, H.-J. Lin, P.-A. Heng, C. Haß, E. Bruni, Q. Wong, U. Halici, M. Ü. Öner, R. Cetin-Atalay, M. Berseth, V. Khvatkov, A. Vylegzhanin, O. Kraus, M. Shaban, N. Rajpoot, R. Awan, K. Sirinukunwattana, T. Qaiser, Y.-W. Tsang, D. Tellez, J. Annuscheit, P. Hufnagl, M. Valkonen, K. Kartasalo, L. Latonen, P. Ruusuvuori, K. Liimatainen, S. Albarqouni, B. Mungal, A. George, S. Demirci, N. Navab, S. Watanabe, S. Seno, Y. Takenaka, H. Matsuda, H. Ahmady Phoulady, V. Kovalev, A. Kalinovsky, V. Liauchuk, G. Bueno, M.M. Fernandez-Carrobles, I. Serrano, O. Deniz, D. Racoceanu and R. Venâncio. "Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer", Journal of the American Medical Association 2017;318:2199-2210. Abstract/PDF DOI PMID 29234806

  3. L. Gallardo-Estrella, E. Pompe, P.A. de Jong, C. Jacobs, E.M. van Rikxoort, M. Prokop, C.I. Sánchez and B. van Ginneken. "Normalized emphysema scores on low dose CT: Validation as an imaging biomarker for mortality", PLoS One 2017;12:e0188902. Abstract/PDF DOI PMID 29227997

  4. J.C.M. van Zelst, R.D.M. Mus, G. Woldringh, M.J.C.M. Rutten, P. Bult, S. Vreemann, M. de Jong, N. Karssemeijer, N. Hoogerbrugge and R.M. Mann. "Surveillance of Women with the BRCA1 or BRCA2 Mutation by Using Biannual Automated Breast US, MR Imaging, and Mammography", Radiology 2017;285:376-388. Abstract DOI PMID 28609204

  5. S.J. van Riel, F. Ciompi, M.M. Winkler Wille, A. Dirksen, S. Lam, E.T. Scholten, S.E. Rossi, N. Sverzellati, M. Naqibullah, R. Wittenberg, M.C. Hovinga-de Boer, M. Snoeren, L. Peters-Bax, O. Mets, M. Brink, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of pulmonary nodules in screening CTs: Comparison between a computer model and human observers", PLoS One 2017;12:e0185032. Abstract/PDF DOI PMID 29121063

  6. E.M. van Leijsen, I.W. van Uden, M. Ghafoorian, M.I. Bergkamp, V. Lohner, E.C. Kooijmans, H.M. van der Holst, A.M. Tuladhar, D.G. Norris, E.J. van Dijk, L.C. Rutten-Jacobs, B. Platel, C.J. Klijn and F.-E. de Leeuw. "Nonlinear temporal dynamics of cerebral small vessel disease The RUN DMC study", Neurology 2017;89(15):1569-1577. Abstract/PDF DOI PMID 28878046

  7. L. Gallardo Estrella, E. Pompe, J.-M. Kuhnigk, D.A. Lynch, S.P. Bhatt, B. van Ginneken and E.M. van Rikxoort. "Computed tomography quantification of tracheal abnormalities in COPD and their influence on airflow limitation", Medical Physics 2017;44:3594-3603. Abstract/PDF DOI PMID 28423189

  8. A. Devaraj, B. van Ginneken, A. Nair and D. Baldwin. "Use of Volumetry for Lung Nodule Management: Theory and Practice", Radiology 2017;284:630-644. Abstract/PDF DOI PMID 28825886

  9. J. Melendez, R.H.H.M. Philipsen, P. Chanda-Kapata, V. Sunkutu, N. Kapata and B. van Ginneken. "Automatic versus human reading of chest X-rays in the Zambia National Tuberculosis Prevalence Survey", International Journal of Tuberculosis and Lung Disease 2017;21:880-886. Abstract/PDF DOI PMID 28786796

  10. A.A.A. Setio, A. Traverso, T. de Bel, M.S.N. Berens, C. v. d. Bogaard, P. Cerello, H. Chen, Q. Dou, M.E. Fantacci, B. Geurts, R. v. d. Gugten, P.A. Heng, B. Jansen, M.M.J. de Kaste, V. Kotov, J.Y.-H. Lin, J.T.M.C. Manders, A. Sóñora-Mengana, J.C. García-Naranjo, E. Papavasileiou, M. Prokop, M. Saletta, C.M. Schaefer-Prokop, E.T. Scholten, L. Scholten, M.M. Snoeren, E.L. Torres, J. Vandemeulebroucke, N. Walasek, G.C.A. Zuidhof, B. v. Ginneken and C. Jacobs. "Validation, comparison, and combination of algorithms for automatic detection of pulmonary nodules in computed tomography images: The LUNA16 challenge", Medical Image Analysis 2017;42:1-13. Abstract/PDF DOI arXiv PMID 28732268

  11. T.L.A. van den Heuvel, D.J. Graham, K.J. Smith, C.L. de Korte and J.A. Neasham. "Development of a Low-Cost Medical Ultrasound Scanner Using a Monostatic Synthetic Aperture", IEEE Transactions on Biomedical Circuits and Systems 2017;11(4):849-857. Abstract/PDF DOI PMID 28715339

  12. F.G. Venhuizen, B. van Ginneken, B. Liefers, Schreur, M.J. van Grinsven, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Robust Total Retina Thickness Segmentation in Optical Coherence Tomography Images using Convolutional Neural Networks", Biomedical Optics Express 2017;8(7):3292-3316. Abstract/PDF DOI PMID 28717568

  13. J.O. Wanders, K. Holland, N. Karssemeijer, P.H. Peeters, W.B. Veldhuis, R.M. Mann and C.H. van Gils. "The effect of volumetric breast density on the risk of screen-detected and interval breast cancers: a cohort study", Breast Cancer Research 2017;19(1):67. Abstract/PDF DOI PMID 28583146

  14. F.G. Venhuizen, B. van Ginneken, F. van Asten, M.J. van Grinsven, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automated Staging of Age-Related Macular Degeneration Using Optical Coherence Tomography", Investigative Ophthalmology and Visual Science 2017;58(4):2318-2328. Abstract/PDF DOI PMID 28437528

  15. B.C. Lassen-Schmidt, J.-M. Kuhnigk, O. Konrad, B. van Ginneken and E. van Rikxoort. "Fast interactive segmentation of the pulmonary lobes from thoracic computed tomography data", Physics in Medicine and Biology 2017;62(16):6649-6665. Abstract/PDF DOI PMID 28570264

  16. M. Ghafoorian, N. Karssemeijer, T. Heskes, I. van Uden, C. Sánchez, G. Litjens, F.-E. de Leeuw, B. van Ginneken, E. Marchiori and B. Platel. "Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities", Nature Scientific Reports 2017;7(1):5110. Abstract/PDF DOI arXiv PMID 28698556

  17. K. Chung, C. Jacobs, E.T. Scholten, O.M. Mets, I. Dekker, M. Prokop, B. van Ginneken and C.M. Schaefer-Prokop. "Malignancy estimation of Lung-RADS criteria for subsolid nodules on CT: accuracy of low and high risk spectrum when using NLST nodules", European Radiology 2017;27:4672-4679. Abstract/PDF DOI PMID 28439653

  18. K. Chung, C. Jacobs, E.T. Scholten, J.M. Goo, H. Prosch, N. Sverzellati, F. Ciompi, O.M. Mets, P.K. Gerke, M. Prokop, B. van Ginneken and C.M. Schaefer-Prokop. "Lung-RADS Category 4X: Does It Improve Prediction of Malignancy in Subsolid Nodules?", Radiology 2017;284(1):264-271. Abstract/PDF DOI PMID 28339311

  19. S.J. van Riel, F. Ciompi, C. Jacobs, M.M. Winkler Wille, E.T. Scholten, M. Naqibullah, S. Lam, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of screen-detected nodules at baseline CT: comparison of the PanCan model, Lung-RADS and NCCN guidelines", European Radiology 2017;27(10):4019-4029. Abstract/PDF DOI PMID 28293773

  20. M.U. Dalmis, G. Litjens, K. Holland, A. Setio, R. Mann, N. Karssemeijer and A. Gubern-Mérida. "Using deep learning to segment breast and fibroglandular tissue in MRI volumes", Medical Physics 2017;44:533-546. Abstract/PDF DOI PMID 28035663

  21. K. Holland, A. Gubern-Mérida, R.M. Mann and N. Karssemeijer. "Optimization of volumetric breast density estimation in digital mammograms", Physics in Medicine and Biology 2017;62(9):3779-3797. Abstract/PDF DOI PMID 28230532

  22. B. van Ginneken. "Fifty years of computer analysis in chest imaging: rule-based, machine learning, deep learning", Radiological Physics and Technology 2017;10(1):23-32. Abstract/PDF DOI PMID 28211015

  23. R. Manniesing, M.T. Oei, L.J. Oostveen, J. Melendez, E.J. Smit, B. Platel, C.I. Sánchez, F.J. Meijer, M. Prokop and B. van Ginneken. "White Matter and Gray Matter Segmentation in 4D Computed Tomography", Nature Scientific Reports 2017;7(119). Abstract/PDF DOI PMID 28273920

  24. L. Hogeweg, C.I. Sánchez, P. Maduskar, R.H.H.M. Philipsen and B. van Ginneken. "Fast and effective quantification of symmetry in medical images for pathology detection: application to chest radiography", Medical Physics 2017;44(6):2242-2256. Abstract/PDF DOI PMID 28134985

  25. E. Pompe, P.A. de Jong, D.A. Lynch, N. Lessmann, I. Išgum, B. van Ginneken, J.-W. Lammers and F.A. Mohamed Hoesein. "Computed tomographic findings in subjects who died from respiratory disease in the National Lung Screening Trial", European Respiratory Journal 2017;49:1601814. Abstract/PDF DOI PMID 28424361

  26. K. Holland, C.H. van Gils, R.M. Mann and N. Karssemeijer. "Quantification of masking risk in screening mammography with volumetric breast density maps", Breast Cancer Research and Treatment 2017;162(3):541-548. Abstract/PDF DOI PMID 28161786

  27. M. Meijs, A. Patel, S. van de Leemput, M. Prokop, E.J. van Dijk, F.-E. de Leeuw, F.J.A. Meijer, B. van Ginneken and R. Manniesing. "Robust Segmentation of the Full Cerebral Vasculature in 4D CT Images of Suspected Stroke Patients", Nature Scientific Reports 2017;7. Abstract/PDF DOI PMID 29142240

  28. J.O.P. Wanders, K. Holland, W.B. Veldhuis, R.M. Mann, R.M. Pijnappel, P.H.M. Peeters, C.H. van Gils and N. Karssemeijer. "Volumetric breast density affects performance of digital screening mammography", Breast Cancer Research and Treatment 2017;162(1):95-103. Abstract/PDF DOI PMID 28012087

  29. A. Patel, B. van Ginneken, F.J.A. Meijer, E.J. van Dijk, M. Prokop and R. Manniesing. "Robust Cranial Cavity Segmentation in CT and CT Perfusion Images of Trauma and Suspected Stroke Patients", Medical Image Analysis 2017;36:216-228. Abstract/PDF DOI PMID 28011374

  30. J. Charbonnier, E. van Rikxoort, A. Setio, C. Schaefer-Prokop, B. van Ginneken and F. Ciompi. "Improving Airway Segmentation in Computed Tomography using Leak Detection with Convolutional Networks", Medical Image Analysis 2017;36:52-60. Abstract/PDF DOI PMID 27842236

  31. O.M. Mets, P.A. de Jong, E.T. Scholten, K. Chung, B. van Ginneken and C.M. Schaefer-Prokop. "Subsolid pulmonary nodule morphology and associated patient characteristics in a routine clinical population", European Radiology 2017;27(2):689-696. Abstract/PDF DOI PMID 27255399

  32. F. Ciompi, K. Chung, S.J. van Riel, A.A.A. Setio, P.K. Gerke, C. Jacobs, E.T. Scholten, C.M. Schaefer-Prokop, M.M.W. Wille, A. Marchiano, U. Pastorino, M. Prokop and B. van Ginneken. "Towards automatic pulmonary nodule management in lung cancer screening with deep learning", Nature Scientific Reports 2017(46479). Abstract/PDF DOI arXiv PMID 28880026

  33. J.G. Cohen, H. Kim, S.B. Park, B. van Ginneken, G.R. Ferretti, C.H. Lee, J.M. Goo and C.M. Park. "Comparison of the effects of model-based iterative reconstruction and filtered back projection algorithms on software measurements in pulmonary subsolid nodules", European Radiology 2017;27:3266-3274. Abstract/PDF DOI PMID 28058482

  34. M. Ghafoorian, N. Karssemeijer, T. Heskes, M. Bergkamp, J. Wissink, J. Obels, K. Keizer, F.-E. de Leeuw, B. v. Ginneken, E. Marchiori and B. Platel. "Deep multi-scale location-aware 3D convolutional neural networks for automated detection of lacunes of presumed vascular origin.", NeuroImage. Clinical 2017;14:391-399. Abstract DOI PMID 28271039

  35. E. Gibson, Y. Hu, H. Huisman and D. Barratt. "Designing image segmentation studies: statistical power, sample size and reference standard quality", Medical Image Analysis 2017;42:44-59. Abstract/PDF DOI PMID 28772163

  36. K. Holland, I. Sechopoulos, R.M. Mann, G.J. den Heeten, C.H. van Gils and N. Karssemeijer. "Influence of breast compression pressure on the performance of population-based mammography screening", Breast Cancer Research 2017;19(1):126. Abstract/PDF DOI

  37. T. Kooi, B. van Ginneken, N. Karssemeijer and A. den Heeten. "Discriminating solitary cysts from soft tissue lesions in mammography using a pretrained deep convolutional neural network", Medical Physics 2017;44:1017-1027. Abstract/PDF DOI PMID 28094850

  38. T. Kooi and N. Karssemeijer. "Classifying Symmetrical Differences and Temporal Change in Mammography Using Deep Neural Networks", Journal of Medical Imaging 2017;4(4):International Society for Optics. Abstract/PDF DOI PMID 29021992

  39. T. Kooi, G. Litjens, B. van Ginneken, A. Gubern-Merida, C.I. Sanchez, R. Mann, A. den Heeten and N. Karssemeijer. "Large scale deep learning for computer aided detection of mammographic lesions", Medical Image Analysis 2017;35:303-312. Abstract/PDF DOI PMID 27497072

  40. S. Laban, G. Giebel, N. Klümper, A. Schröck, J. Doescher, G. Spagnoli, J. Thierauf, M. Theodoraki, R. Remark, S. Gnjatic, R. Krupar, A. Sikora, G. Litjens, N. Grabe, G. Kristiansen, F. Bootz, P. Schuler, C. Brunner, J. Brägelmann, T. Hoffmann and S. Perner. "MAGE expression in head and neck squamous cell carcinoma primary tumors, lymph node metastases and respective recurrences: implications for immunotherapy", Oncotarget 2017;8:14719-14735. Abstract/PDF DOI PMID 28146422

  41. B. Liefers, F.G. Venhuizen, V. Schreur, B. van Ginneken, C. Hoyng, S. Fauser, T. Theelen and C.I. Sánchez. "Automatic detection of the foveal center in optical coherence tomography", Biomedical Optics Express 2017;8(11):5160-5178. Abstract/PDF DOI PMID 29188111

  42. G. Litjens, T. Kooi, B. Ehteshami Bejnordi, A.A.A. Setio, F. Ciompi, M. Ghafoorian, J. van der Laak, B. van Ginneken and C. Sánchez. "A Survey on Deep Learning in Medical Image Analysis", Medical Image Analysis 2017;42:60-88. Abstract/PDF DOI arXiv PMID 28778026

  43. T. Mertzanidou, J.H. Hipwell, S. Reis, D.J. Hawkes, B. Ehteshami Bejnordi, M. Dalmis, S. Vreemann, B. Platel, J. van der Laak, N. Karssemeijer, M. Hermsen, P. Bult and R. Mann. "3D volume reconstruction from serial breast specimen radiographs for mapping between histology and 3D whole specimen imaging", Medical Physics 2017;44:935-948. Abstract/PDF DOI PMID 28064435

  44. J.-J. Mordang, A. Gubern-Merida, A. Bria, F. Tortorella, G. den Heeten and N. Karssemeijer. "Improving computer-aided detection assistance in breast cancer screening by removal of obviously false-positive findings", Medical Physics 2017;44(4):1390-1401. Abstract/PDF DOI PMID 28182277

  45. N. Moriakov. "On Effective Birkhoff's Ergodic Theorem for Computable Actions of Amenable Groups", Theory of Computing Systems 2017. PDF DOI

  46. M.T.H. Oei, F.J.A. Meijer, W.-J. van der Woude, E.J. Smit, B. van Ginneken, R. Manniesing and M. Prokop. "Interleaving cerebral CT perfusion with neck CT angiography. Part II: clinical implementation and image quality", European Radiology 2017;27:2411-2418. Abstract/PDF DOI PMID 27651144

  47. M.T.H. Oei, F.J.A. Meijer, W.-J. van der Woude, E.J. Smit, B. van Ginneken, M. Prokop and R. Manniesing. "Interleaving cerebral CT perfusion with neck CT angiography part I. Proof of concept and accuracy of cerebral perfusion values.", European Radiology 2017;27:2649-2656. Abstract DOI PMID 27718078

  48. A. Rodriguez-Ruiz, J. Teuwen, S. Vreemann, R.W. Bouwman, R.E. van Engen, N. Karssemeijer, R.M. Mann, A. Gubern-Merida and I. Sechopoulos. "New reconstruction algorithm for digital breast tomosynthesis: better image quality for humans and computers", Acta Radiologica 2017:028418511774848. PDF DOI

  49. A. Rodríguez-Ruiz, S.S.J. Feng, J. Zelst, S. Vreemann, J.R. Mann, C.J. D'Orsi and I. Sechopoulos. "Improvements of an objective model of compressed breasts undergoing mammography: Generation and characterization of breast shapes", Medical Physics 2017.

  50. J. Teuwen and A. Amenta. "Lp–Lq Off-diagonal estimates for the Ornstein-Uhlenbeck semigroup: some positive and negative results", Bulletin of the Australian Mathematical Society 2017;96(01):154-161. Abstract/PDF DOI

  51. W. Venderink, M. van der Leest, A. van Luijtelaar, W.J. van de Ven, J.J. Fütterer, J.M. Sedelaar and H.J. Huisman. "Retrospective comparison of direct in-bore magnetic resonance imaging (MRI) guided biopsy and fusion guided biopsy in patients with MRI lesions which are likely or highly likely to be clinically significant prostate cancer", World Journal of Urology 2017;35(12):1849-1855. Abstract/PDF DOI PMID 28871396

  52. S. Vreemann, A. Rodriguez-Ruiz, D. Nickel, L. Heacock, L. Appelman, J. van Zelst, N. Karssemeijer, E. Weiland, M. Maas, L. Moy, B. Kiefer and R.M. Mann. "Compressed Sensing for Breast MRI: Resolving the Trade-Off Between Spatial and Temporal Resolution", Investigative Radiology 2017;52:574-582. Abstract/PDF DOI PMID 28463932

  53. U. Yousaf-Khan, C. van der Aalst, P.A. de Jong, M. Heuvelmans, E. Scholten, J. Walter, K. Nackaerts, H. Groen, R. Vliegenthart, K. Ten Haaf, M. Oudkerk and H. de Koning. "Risk stratification based on screening history: the NELSON lung cancer screening study", Thorax 2017;72:819-824. Abstract/PDF DOI PMID 28360223

  54. J. van Zelst, T. Tan, B. Platel, M. de Jong, A. Steenbakkers, M. Mourits, A. Grivegnee, C. Borelli, N. Karssemeijer and R. Mann. "Improved cancer detection in automated breast ultrasound by radiologists using Computer Aided Detection", European Journal of Radiology 2017;89:54-59. Abstract

  55. J.C.M. van Zelst, M. Balkenhol, T. Tan, M. Rutten, M. Imhof-Tas, P. Bult, N. Karssemeijer and R.M. Mann. "Sonographic Phenotypes of Molecular Subtypes of Invasive Ductal Cancer in Automated 3-D Breast Ultrasound", Ultrasound in Medicine and Biology 2017;43:1820-1828. Abstract/PDF DOI PMID 28576620


Papers in conference proceedings

  1. M. Ghafoorian, A. Mehrtash, T. Kapur, N. Karssemeijer, E. Marchiori, M. Pesteie, C.R.G. Guttmann, F.-E. de Leeuw, C.M. Tempany, B. van Ginneken, A. Fedorov, P. Abolmaesumi, B. Platel and W.M. Wells. "Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation.", in: Medical Image Computing and Computer-Assisted Intervention, volume 10435 of Lecture Notes in Computer Science, 2017, pages 516-524. Abstract/PDF DOI arXiv

  2. A. Mehrtash, A. Sedghi, M. Ghafoorian, M. Taghipour, C.M. Tempany, W.M. Wells, T. Kapur, P. Mousavi, P. Abolmaesumi and A. Fedorov. "Classification of clinical significance of MRI prostate findings using 3D convolutional neural networks", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017, pages 101342A-101342A-4. Abstract/PDF DOI

  3. G.E. Humpire Mamani, A.A.A. Setio, B. van Ginneken and C. Jacobs. "Organ detection in thorax abdomen CT using multi-label convolutional neural networks", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017. Abstract/PDF DOI

  4. A. Patel, S. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Automatic Cerebrospinal Fluid Segmentation in Non-Contrast CT Images Using a 3D Convolutional Network", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017. Abstract/PDF DOI

  5. P. Bandi, R. van de Loo, M. Intezar, D. Geijs, F. Ciompi, B. van Ginneken, J. van der Laak and G. Litjens. "Comparison of Different Methods for Tissue Segmentation In Histopathological Whole-Slide Images", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 591-595. Abstract/PDF DOI arXiv

  6. F. Ciompi, O.G.F. Geessink, B. Ehteshami Bejnordi, G.S. de Souza, A. Baidoshvili, G. Litjens, B. van Ginneken, I.D. Nagtegaal and J.A. van der Laak. "The importance of stain normalization in colorectal tissue classification with convolutional networks", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 160-163. Abstract/PDF DOI arXiv

  7. B. Ehteshami Bejnordi, J. Lin, B. Glass, M. Mullooly, G. Gierach, M. Sherman, N. Karssemeijer, J.A. van der Laak and A. Beck. "Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 929-932. Abstract/PDF DOI arXiv PMID 28230532

  8. T.L.A. van den Heuvel, H. Petros, S. Santini, C.L. de Korte and B. van Ginneken. "A step towards measuring the fetal head circumference with the use of obstetric ultrasound in a low resource setting", in: Medical Imaging, volume 10139 of Proceedings of the SPIE, 2017, page 101390V. Abstract/PDF DOI

  9. T.L.A. van den Heuvel, H. Petros, S. Santini, C.L. de Korte and B. van Ginneken. "Combining Automated Image Analysis with Obstetric Sweeps for Prenatal Ultrasound Imaging in Developing Countries", in: MICCAI Workshop: Point-of-Care Ultrasound, volume 10549 of Lecture Notes in Computer Science, 2017, pages 105-112. Abstract/PDF DOI

  10. T. Kooi and N. Karssemeijer. "Deep learning of symmetrical discrepancies for computer-aided detection of mammographic masses", in: Medical Imaging, volume 10133, 2017, page 101341J. Abstract/PDF DOI

  11. T. Kooi, J.-J. Mordang and N. Karssemeijer. "Conditional Random Field Modelling of Interactions Between Findings in Mammography", in: Medical Imaging, volume 10133, 2017, page 101341E. Abstract/PDF DOI

  12. B. Liefers, F.G. Venhuizen, T. Theelen, C. Hoyng, B. van Ginneken and C.I. Sanchez. "Fovea Detection in Optical Coherence Tomography using Convolutional Neural Networks", in: Medical Imaging, volume 10133 of Proceedings of the SPIE, 2017, page 1013302. Abstract/PDF DOI


Abstracts

  1. J. Bukala, G.E. Humpire Mamani, E. Scholten, M. Prokop, B. van Ginneken and C. Jacobs. "Fully Automatic Measurement of the Splenic Volume in CT with U-Net Convolutional Neural Networks", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  2. A. Schreuder, C.M. Schaefer-Prokop, E.T. Scholten, C. Jacobs, M. Prokop and B. van Ginneken. "Use of a risk model combining clinical information and CT findings to customize follow-up intervals in lung cancer screening", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  3. M. Silva, G. Capretti, N. Sverzellati, C. Jacobs, F. Ciompi, B. van Ginneken, C.M. Schaefer-Prokop, M. Prokop, A. Marchiano and U. Pastorino. "Non-solid and Part-solid Nodules: Comparison Between Visual and Computer Aided Detection", in: World Congress of Thoracic Imaging, 2017. Abstract

  4. F.G. Venhuizen, S. Schaffhauser, V. Schreur, B. Liefers, B. van Ginneken, C.B. Hoyng, T. Theelen, E.K. de Jong and C.I. Sánchez. "Fully automated detection of hyperreflective foci in optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2017. Abstract

  5. M. Silva, G. Capretti, N. Sverzellati, C. Jacobs, F. Ciompi, B. van Ginneken, C. Schaefer-Prokop, A. Marchianò and U. Pastorino. "Subsolid and part-solid nodules in lung cancer screening: comparison between visual and computer-aided detection", in: European Congress of Radiology, 2017. Abstract

  6. M. Meijs, S. Pegge, M. Prokop, B. van Ginneken, F.J.A. Meijer and R. Manniesing. "Detection of vessel occlusion in acute stroke is facilitated by color-coded 4D-CTA", in: European Congress of Radiology, 2017. Abstract/PDF

  7. S.A. Pegge, M. Meijs, M. Prokop, R. Manniesing and F.J. Meijer. "Color-mapping of 4D-CTA for the detection and classification of cranial arteriovenous fistulas", in: European Society of Neuroradiology, 2017. Abstract/PDF

  8. A. Patel, F.J.A. Meijer, M. Prokop, B. van Ginneken and R. Manniesing. "Robust segmentation of the cranial cavity in non-contrast CT and CT perfusion of the brain", in: European Congress of Radiology, 2017. Abstract

  9. J.J. Gomez, C.I. Sánchez, B. Liefers, F.G. Venhuizen, G. Fatti, A. Morilla-Grasa, Y. Cartagena, A.H. Cabarcos, A. Santos, M.J. Ledesma-Carbayo and A. Anton-Lopez. "Automated Analysis of Retinal Images for detection of Glaucoma based on Convolutional Neural Networks", in: Association for Research in Vision and Ophthalmology, 2017. Abstract

  10. S. van de Leemput, F.J.A. Meijer, M. Prokop and R. Manniesing. "Cerebral white matter, gray matter and cerebrospinal fluid segmentation in CT using VCAST: a volumetric cluster annotation and segmentation tool", in: European Congress of Radiology, 2017. Abstract

  11. B. Liefers, F.G. Venhuizen, V. Schreur, B. van Ginneken, C. Hoyng, T. Theelen and C.I. Sánchez. "Automatic detection of the foveal center in optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2017. Abstract

  12. L. Stoilescu and H. Huisman. "Feasibility of multi­reference­tissue normalization of T2­weighted prostate MRI", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  13. L. Stoilescu, M.C. Maas and H. Huisman. "Feasibility of multireference tissue normalization of T2-weighted prostate MRI.", in: European Society for Magnetic Resonance in Medicine and Biology, 2017. Abstract

  14. J. Teuwen, M. Kallenberg, A. Gubern-Merida, A. Rodriguez-Ruiz, N. Karssemeijer and R. Mann. "Automated pre-selection of mammograms without abnormalities using deep learning", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract


Theses

  1. N. Kraamwinkel. "Automatic Liver Lesion Segmentation in Abdominal CT Scans: Exploring Cascaded 2D and 2.5D U-Net Approaches", Masters thesis, Universiteit van Amsterdam / Radboud UMC, 2017. Abstract/PDF

  2. T. Kockelkorn. "Interactive texture analysis in chest CT Scans", PhD thesis, Utrecht University, 2017. Abstract/PDF

  3. B. Bejnordi. "Histopathological diagnosis of breast cancer using machine learning", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2017. Abstract/PDF URL

  4. J. Charbonnier. "Segmentation & quantification of airways and blood vessels in chest CT", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2017. Abstract/PDF URL

  5. K. Holland. "Breast density measurement for personalised screening", PhD thesis, 2017. Abstract/PDF URL


2016

Papers in international journals

  1. T.T. Kockelkorn, R. Ramos, J. Ramos, P.A. de Jong, C.M. Schaefer-Prokop, R. Wittenberg, A.M. Tiehuis, J.C. Grutters, M.A. Viergever and B. van Ginneken. "Optimization Strategies for Interactive Classification of Interstitial Lung Disease Textures", Frontiers in ICT 2016;3:33. Abstract/PDF DOI

  2. E. Lens, A.N. Kotte, A. Patel, H.D. Heerkens, M. Bal, G. van Tienhoven, A. Bel, A. van der Horst and G.J. Meijer. "Probabilistic treatment planning for pancreatic cancer treatment: prospective incorporation of respiratory motion shows only limited dosimetric benefit", Acta Oncologica 2016:1-7. PDF DOI PMID 27885864

  3. M. Pompe, E. van Rikxoort, O. Mets, J. Charbonnier, J. Kuhnigk, H. de Koning, M. Oudkerk, R. Vliegenthart, P. Zanen, J. Lammers, B. van Ginneken, P. de Jong and F. Mohamed Hoesein. "Follow-up of CT-derived airway wall thickness: Correcting for changes in inspiration level improves reliability", European Journal of Radiology 2016;85:2008-2013. Abstract/PDF DOI PMID 27776653

  4. M. Ghafoorian, N. Karssemeijer, I.W.M. van Uden, F.-E. de Leeuw, T. Heskes, E. Marchiori and B. Platel. "Automated Detection of White Matter Hyperintensities of All Sizes in Cerebral Small Vessel Disease", Medical Physics 2016;43(12):6246-6258. Abstract/PDF DOI PMID 27908171

  5. B. Ehteshami Bejnordi, M. Balkenhol, G. Litjens, R. Holland, P. Bult, N. Karssemeijer and J. van der Laak. "Automated Detection of DCIS in Whole-Slide H&E Stained Breast Histopathology Images", IEEE Transactions on Medical Imaging 2016;35(9):2141-2150. Abstract/PDF DOI PMID 27076354

  6. R. Remark, T. Merghoub, N. Grabe, G. Litjens, D. Damotte, J.D. Wolchok, M. Merad and S. Gnjatic. "In-depth tissue profiling using multiplexed immunohistochemical consecutive staining on single slide", Science Immunology 2016;1(1):aaf6925-aaf6925. Abstract/PDF DOI PMID 28783673

  7. T.D. Koster, E.M. van Rikxoort, R.-H. Huebner, F. Doellinger, K. Klooster, J. Charbonnier, S. Radhakrishnan, F.J.F. Herth and D.-J. Slebos. "Predicting Lung Volume Reduction after Endobronchial Valve Therapy Is Maximized Using a Combination of Diagnostic Tools", Respiration 2016;92:150-7. Abstract/PDF DOI PMID 27577190

  8. T.T.J.P. Kockelkorn, P.A. de Jong, C.M. Schaefer-Prokop, R. Wittenberg, A.M. Tiehuis, H.A. Gietema, J.C. Grutters, M.A. Viergever and B. van Ginneken. "Semi-automatic classification of textures in thoracic CT scans", Physics in Medicine and Biology 2016;61(16):5906-5924. Abstract/PDF DOI PMID 27436568

  9. R.M. Arntz, S. van den Broek, I.W. van Uden, M. Ghafoorian, B. Platel, L.C. Rutten-Jacobs, N.A. Maaijwee, P. Schaapsmeerders, H.C. Schoonderwaldt, E.J. van Dijk and F. de Leeuw. "Accelerated development of cerebral small vessel disease in young stroke patients", Neurology 2016. Abstract/PDF DOI PMID 27521431

  10. K. Holland, J. van Zelst, G.J. den Heeten, M. Imhof-Tas, R.M. Mann, C.H. van Gils and N. Karssemeijer. "Consistency of breast density categories in serial screening mammograms: A comparison between automated and human assessment.", Breast 2016;29:49-54. Abstract/PDF DOI PMID 27420382

  11. T.L.A. van den Heuvel, A.W. van der Eerden, R. Manniesing, M. Ghafoorian, T. Tan, T.M.J.C. Andriessen, T.V. Vyvere, L. van den Hauwe, B.M. ter Haar Romeny, B.M. Goraj and B. Platel. "Automated detection of cerebral microbleeds in patients with Traumatic Brain Injury", NeuroImage: Clinical 2016;12:241 - 251. Abstract/PDF DOI PMID 27489772

  12. T. Kobus, J.A.W.M. van der Laak, M.C. Maas, T. Hambrock, C.C. Bruggink, C.A. Hulsbergen-van de Kaa, T.W.J. Scheenen and A. Heerschap. "Contribution of Histopathologic Tissue Composition to Quantitative MR Spectroscopy and Diffusion-weighted Imaging of the Prostate", Radiology 2016;278(3):801-811. Abstract/PDF DOI PMID 26418614

  13. R. Busch, M.K. Han, R.P. Bowler, M.T. Dransfield, J.M. Wells, E.A. Regan, C.P. Hersh and COPDGene Investigators. "Risk factors for COPD exacerbations in inhaled medication users: the COPDGene study biannual longitudinal follow-up prospective cohort", BMC Pulmonary Medicine 2016;16:28. Abstract/PDF DOI PMID 26861867

  14. H. Greenspan, R.M. Summers and B. van Ginneken. "Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique", IEEE Transactions on Medical Imaging 2016;35(5):1153-1159. PDF DOI

  15. E. Pompe, P.A. de Jong, E.M. van Rikxoort, L. Gallardo Estrella, W.U. de Jong, R. Vliegenthart, M. Oudkerk, C.M. van der Aalst, B. van Ginneken, J.-W.J. Lammers and F.A. Mohamed Hoesein. "Smokers with emphysema and small airway disease on computed tomography have lower bone density", International Journal of Chronic Obstructive Pulmonary Disease 2016;11:1207-1216. Abstract/PDF DOI PMID 27354779

  16. T. Tan, A. Gubern-Mérida, C. Borelli, R. Manniesing, J. van Zelst, L. Wang, W. Zhang, B. Platel, R.M. Mann and N. Karssemeijer. "Segmentation of malignant lesions in 3D breast ultrasound using a depth-dependent model", Medical Physics 2016;43(7):4074-4084. Abstract/PDF DOI PMID 27370126

  17. G. Litjens, C.I. Sanchez, N. Timofeeva, M. Hermsen, I. Nagtegaal, I. Kovacs, C. Hulsbergen-van de Kaa, P. Bult, B. van Ginneken and J. van der Laak. "Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis", Nature Scientific Reports 2016;6:26286. Abstract/PDF DOI PMID 27212078

  18. J.G. Cohen, J.M. Goo, R.-E. Yoo, S.B. Park, B. van Ginneken, G.R. Ferretti, C.H. Lee and C.M. Park. "The effect of late-phase contrast enhancement on semi-automatic software measurements of CT attenuation and volume of part-solid nodules in lung adenocarcinomas", European Journal of Radiology 2016;85(6):1174-1180. Abstract/PDF DOI PMID 27161068

  19. W.J.M. van de Ven, W. Venderink, J.P.M. Sedelaar, J. Veltman, J.O. Barentsz, J.J. Fütterer, E.B. Cornel and H.J. Huisman. "MR-targeted TRUS prostate biopsy using local reference augmentation: initial experience.", Int Urol Nephrol 2016. Abstract/PDF DOI PMID 27068817

  20. J. Melendez, C.I. Sanchez, R.H.H.M. Philipsen, P. Maduskar, R. Dawson, G. Theron, K. Dheda and B. van Ginneken. "An automated tuberculosis screening strategy combining X-ray-based computer-aided detection and clinical information", Nature Scientific Reports 2016;6:25265. Abstract/PDF DOI PMID 27126741

  21. J.D. Hoffman, M.J.J.P. van Grinsven, C. Li, M. Brantley, Jr, J. McGrath, A. Agarwal, W.K. Scott, S.G. Schwartz, J. Kovach, M. Pericak-Vance, C.I. Sánchez and J.L. Haines. "Genetic Association Analysis of Drusen Progression", Investigative Ophthalmology and Visual Science 2016;57(4):2225-2231. Abstract/PDF DOI PMID 27116550

  22. J.G. Cohen, J.M. Goo, R.-E. Yoo, C.M. Park, C.H. Lee, B. van Ginneken, D.H. Chung and Y.T. Kim. "Software performance in segmenting ground-glass and solid components of subsolid nodules in pulmonary adenocarcinomas", European Radiology 2016;26(12):4465-4474. Abstract/PDF DOI PMID 27048527

  23. B. Ehteshami Bejnordi, G. Litjens, N. Timofeeva, I. Otte-Holler, A. Homeyer, N. Karssemeijer and J. van der Laak. "Stain specific standardization of whole-slide histopathological images", IEEE Transactions on Medical Imaging 2016;35(2):404-415. Abstract/PDF DOI PMID 26353368

  24. R. Manniesing, C. Brune, B. van Ginneken and M. Prokop. "A 4D CT Digital Phantom of an Individual Human Brain for Perfusion Analysis", PeerJ 2016;4:e2683. Abstract/PDF DOI PMID 27917312

  25. O.M. Mets, P.A. de Jong, K. Chung, J.-W.J. Lammers, B. van Ginneken and C.M. Schaefer-Prokop. "Fleischner recommendations for the management of subsolid pulmonary nodules: high awareness but limited conformance - a survey study", European Radiology 2016;26:3840-3849. Abstract/PDF DOI PMID 26945759

  26. A.J. Ritchie, C. Sanghera, C. Jacobs, W. Zhang, J. Mayo, H. Schmidt, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J.M. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tammemagi, M.S. Tsao, S. Lam and the Pan-Canadian Early Detection of Lung Cancer Study Group. "Computer Vision Tool and Technician as First Reader of Lung Cancer Screening CT Scans", Journal of Thoracic Oncology 2016;11:709-717. Abstract/PDF DOI PMID 26994641

  27. M. Kallenberg, K. Petersen, M. Nielsen, A. Ng, P. Diao, C. Igel, C. Vachon, K. Holland, N. Karssemeijer and M. Lillholm. "Unsupervised deep learning applied to breast density segmentation and mammographic risk scoring", IEEE Transactions on Medical Imaging 2016;35:1322-1331. Abstract/PDF DOI PMID 26915120

  28. C.L. de Korte, S. Fekkes, A.J. Nederveen, R. Manniesing and H. Hansen. "Review: Mechanical Characterization of Carotid Arteries and Atherosclerotic Plaques", IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control 2016;63(10):1613-1623. Abstract/PDF DOI PMID 27249826

  29. J.-J. Mordang, A. Gubern-Mérida, G. den Heeten and N. Karssemeijer. "Reducing false positives of microcalcification detection systems by removal of breast arterial calcifications", Medical Physics 2016;43(4):1676-1687. Abstract/PDF DOI PMID 27036566

  30. A.A.A. Setio, F. Ciompi, G. Litjens, P. Gerke, C. Jacobs, S. van Riel, M.W. Wille, M. Naqibullah, C. Sánchez and B. van Ginneken. "Pulmonary nodule detection in CT images: false positive reduction using multi-view convolutional networks", IEEE Transactions on Medical Imaging 2016;35(5):1160-1169. Abstract/PDF DOI PMID 26955024

  31. M.J.J.P. van Grinsven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez.. "Fast Convolutional Neural Network Training Using Selective Data Sampling: Application to Hemorrhage Detection in Color Fundus Images", IEEE Transactions on Medical Imaging 2016;35(5):1273-1284. Abstract/PDF DOI PMID 26886969

  32. S. Schalekamp, N. Karssemeijer, A.M. Cats, B. De Hoop, B.H.J. Geurts, O. Berger-Hartog, B. van Ginneken and C.M. Schaefer-Prokop. "The Effect of Supplementary Bone-Suppressed Chest Radiographs on the Assessment of a Variety of Common Pulmonary Abnormalities: Results of an Observer Study", Journal of Thoracic Imaging 2016;31(2):119-125. Abstract/PDF DOI PMID 26783697

  33. M.J.J.P. van Grinsven, T. Theelen, L. Witkamp, J. van der Heijden, J.P.H. van de Ven, C.B. Hoyng, B. van Ginneken and C.I. Sánchez. "Automatic differentiation of color fundus images containing drusen or exudates using a contextual spatial pyramid approach", Biomedical Optics Express 2016;7(3):709-725. Abstract/PDF DOI PMID 27231583

  34. P. Maduskar, R.H.M.M. Philipsen, J. Melendez, E. Scholten, D. Chanda, H. Ayles, C.I. Sánchez and B. van Ginneken. "Automatic detection of pleural effusion in chest radiographs", Medical Image Analysis 2016;28:22-32. Abstract/PDF DOI PMID 26688067

  35. J. Melendez, B. van Ginneken, P. Maduskar, R. Philipsen, H. Ayles and C.I. Sánchez. "On Combining Multiple-Instance Learning and Active Learning for Computer-Aided Detection of Tuberculosis", IEEE Transactions on Medical Imaging 2016;35(4):1013-1024. Abstract/PDF DOI PMID 26660889

  36. J. Charbonnier, M. Brink, F. Ciompi, E. Scholten, C. Schaefer-Prokop and E. van Rikxoort. "Automatic Pulmonary Artery-Vein Separation and Classification in Computed Tomography Using Tree Partitioning and Peripheral Vessel Matching.", IEEE Transactions on Medical Imaging 2016:882-92. Abstract/PDF DOI PMID 26584489

  37. M. Dalmis, A. Gubern-Mérida, S. Vreemann, N. Karssemeijer, R. Mann and B. Platel. "A Computer-Aided Diagnosis System for Breast DCE-MRI at High Spatiotemporal Resolution", Medical Physics 2016;43(1):84-94. Abstract/PDF DOI PMID 26745902

  38. A. Gubern-Mérida, S. Vreemann, R. Marti, J. Melendez, S. Lardenoije, R. Mann, N. Karssemeijer and B. Platel. "Automated detection of breast cancer in false-negative screening MRI studies from women at increased risk", European Journal of Radiology 2016;85(2):472-479. Abstract/PDF DOI PMID 26781154

  39. M. Meijs, S. Christensen, M.G. Lansberg, G.W. Albers and F. Calamante. "Analysis of perfusion MRI in stroke: To deconvolve, or not to deconvolve", Magnetic Resonance in Medicine 2016;76:1282-1290. Abstract/PDF DOI PMID 26519871

  40. G. Bozovic, S. Steen, T. Sjöberg, C. Schaefer-Prokop, J. Verschakelen, Q. Liao, P. Höglund, R. Siemund and I.M. Björkman-Burtscher. "Circulation stabilizing therapy and pulmonary high-resolution computed tomography in a porcine brain-dead model", Acta Anaesthesiologica Scandinavica 2016;60:93-102. Abstract/PDF DOI PMID 26251260

  41. C.A. Ridge, A. Yildirim, P.M. Boiselle, T. Franquet, C.M. Schaefer-Prokop, D. Tack, P.A. Gevenois and A.A. Bankier. "Differentiating between Subsolid and Solid Pulmonary Nodules at CT: Inter- and Intraobserver Agreement between Experienced Thoracic Radiologists", Radiology 2016:888-96. Abstract/PDF DOI PMID 26458208

  42. C. Jacobs, E.M. van Rikxoort, K. Murphy, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of pulmonary nodules: a comparative study using the public LIDC/IDRI database", European Radiology 2016;26:2139-2147. Abstract/PDF DOI PMID 26443601

  43. L. Gallardo-Estrella, D.A. Lynch, M. Prokop, D. Stinson, J. Zach, P.F. Judy, B. van Ginneken and E.M. van Rikxoort. "Normalizing computed tomography data reconstructed with different filter kernels: effect on emphysema quantification", European Radiology 2016;26:478-486. Abstract/PDF DOI PMID 26002132

  44. R. Manniesing, M.T.H. Oei, B. van Ginneken and M. Prokop. "Quantitative Dose Dependency Analysis of Whole-Brain CT Perfusion Imaging", Radiology 2016;278(1):190-197. Abstract/PDF DOI PMID 26114226

  45. F. Ciompi, S. Balocco, J. Rigla, X. Carrillo, J. Mauri and P. Radeva. "Computer-aided detection of intracoronary stent in intravascular ultrasound sequences.", Medical physics 2016;43:5616. Abstract/PDF DOI PMID 27782708

  46. O.A. Debats, A.S. Fortuin, H.J.M. Meijer, T. Hambrock, G.J.S. Litjens, J.O. Barentsz and H.J. Huisman. "Intranodal signal suppression in pelvic MR lymphography of prostate cancer patients: a quantitative comparison of ferumoxtran-10 and ferumoxytol.", PeerJ 2016;4:e2471. Abstract DOI PMID 27781154

  47. O.A. Debats, M. Meijs, G.J.S. Litjens and H.J. Huisman. "Automated multistructure atlas-assisted detection of lymph nodes using pelvic MR lymphography in prostate cancer patients", Medical Physics 2016;43(6):3132. Abstract/PDF DOI PMID 27277059

  48. A. Rodríguez-Ruiz, S. Feng, J. Mann, C. D’Orsi and I. Sechopoulos. "Improvement of an objective model of compressed breasts undergoing mammography", Physica Medica 2016;32:283.

  49. J. Schwaab, Y. Diez, A. Oliver, R. MartÃ, J. van Zelst, A. Gubern-MÃĐrida, A.B. Mourri, J. Gregori and M. GÞnther. "Automated quality assessment in three-dimensional breast ultrasound images", Journal of Medical Imaging 2016;3(2):027002-027002.

  50. J. Schwaab, Y. Diez, A. Oliver, R. Martí, J. van Zelst, A. Gubern-Mérida, A.B. Mourri, J. Gregori and M. Günther. "Automated quality assessment in three-dimensional breast ultrasound images.", Journal of medical imaging (Bellingham, Wash.) 2016;3:027002. Abstract DOI PMID 27158633

  51. J. Teuwen. "On the integral kernels of derivatives of the Ornstein–Uhlenbeck semigroup", Infinite Dimensional Analysis, Quantum Probability and Related Topics 2016;19(04):1650030. PDF DOI

  52. W.M. van de Ven, J. Sedelaar, M. van der Leest, B.J. Hulsbergen-van de Kaa, C.A., J. Futterer and H.J. Huisman. "Visibility of prostate cancer on transrectal ultrasound during fusion with multi-parametric magnetic resonance imaging for biopsy", Clinical Imaging 2016;40(4):745-750. Abstract/PDF DOI PMID 25979040


Papers in conference proceedings

  1. A. Bria, C. Marrocco, N. Karssemeijer, M. Molinara and F. Tortorella. "Deep Cascade Classifiers to Detect Clusters of Microcalcifications", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 415-422. Abstract/PDF DOI

  2. A. Bria, C. Marrocco, J.J. Mordang, N. Karssemeijer, M. Molinara and F. Tortorella. "LUT-QNE: Look-Up-Table Quantum Noise Equalization in Digital Mammograms", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 27-34. Abstract/PDF DOI

  3. E. García, A. Oliver, Y. Diez, O. Diaz, A. Gubern-Mérida, X. Lladó and J. Martí. "Comparison of Four Breast Tissue Segmentation Algorithms for Multi-modal MRI to X-ray Mammography Registration", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 493-500. Abstract/PDF DOI

  4. J. Georgii, T. Paetz, M. Harz, C. Stoecker, M. Rothgang, J. Colletta, K. Schilling, M. Schlooz-Vries, R. Mann and H.K. Hahn. "Simulation and Visualization to Support Breast Surgery Planning", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 257-264. Abstract/PDF DOI

  5. T. Kooi, A. Gubern-Mérida, J.J. Mordang, R. Mann, R. Pijnappel, K. Schuur, A. den Heeten and N. Karssemeijer. "A Comparison Between a Deep Convolutional Neural Network and Radiologists for Classifying Regions of Interest in Mammography", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 51-56. Abstract/PDF DOI

  6. T. Mertzanidou, J. Hipwell, S. Reis, B. Ehteshami Bejnordi, M. Hermsen, M. Dalmis, S. Vreemann, B. Platel, J. van der Laak, N. Karssemeijer, R. Mann, P. Bult and D. Hawkes. "Whole Mastectomy Volume Reconstruction from 2D Radiographs and Its Mapping to Histology", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 367-374. Abstract/PDF DOI

  7. J.J. Mordang, T. Janssen, A. Bria, T. Kooi, A. Gubern-Mérida and N. Karssemeijer. "Automatic Microcalcification Detection in Multi-vendor Mammography Using Convolutional Neural Networks", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 35-42. Abstract/PDF DOI

  8. M. Kallenberg, M. Nielsen, K. Holland, N. Karssemeijer, C. Igel and M. Lillholm. "Learning Density Independent Texture Features", in: Breast Imaging, volume 9699, 2016, pages 299-306. Abstract/PDF DOI

  9. K. Holland, I. Sechopoulos, G. den Heeten, R. Mann and N. Karssemeijer. "Performance of breast cancer screening depends on mammographic compression", in: Breast Imaging, volume 9699 of Lecture Notes in Computer Science, 2016, pages 183-189. Abstract/PDF DOI

  10. N. Lessmann, I. Išgum, A.A. Setio, B.D. de Vos, F. Ciompi, P.A. de Jong, M. Oudkerk, W.P.T.M. Mali, M.A. Viergever and B. van Ginneken. "Deep convolutional neural networks for automatic coronary calcium scoring in a screening study with low-dose chest CT", in: Medical Imaging, volume 9785 of Proceedings of the SPIE, 2016, pages 978511-1 - 978511-6. Abstract/PDF DOI

  11. K. Holland, C.H. van Gils, J.O.P. Wanders, R.M. Mann and N. Karssemeijer. "Quantification of mammographic masking risk with volumetric breast density maps: How to select women for supplemental screening", in: Medical Imaging of Proceedings of the SPIE, 2016. Abstract/PDF DOI

  12. M. Ghafoorian, N. Karssemeijer, T. Heskes, I.W.M. van Uden, F.-E. de Leeuw, E. Marchiori, B. van Ginneken and B. Platel. "Non-uniform patch sampling with deep convolutional neural networks for white matter hyperintensity segmentation", in: IEEE International Symposium on Biomedical Imaging, 2016, pages 1414-1417. Abstract/PDF DOI

  13. K. Vijverberg, M. Ghafoorian, I.W.M. van Uden, F.-E. de Leeuw, B. Platel and T. Heskes. "A single-layer network unsupervised feature learning method for white matter hyperintensity segmentation", in: Medical Imaging, 2016. Abstract/PDF DOI

  14. A. Gubern-Mérida, T. Tan, J. van Zelst, R.M. Mann and N. Karssemeijer. "Automated linking of suspicious findings between automated 3D breast ultrasound volumes", in: Medical Imaging of Proceedings of the SPIE, 2016. Abstract/PDF

  15. G. Litjens, K. Safferling and N. Grabe. "Automated robust registration of grossly misregistered whole-slide images with varying stains", in: Medical Imaging, volume 9791 of Proceedings of the SPIE, 2016, page 979103. Abstract/PDF DOI


Abstracts

  1. K. Kallenberg, M. Nielsen, K. Holland, N. Karssemeijer and M. Lillholm. "Breast Cancer Risk Prediction with Density Independent Texture Features", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  2. N. Karssemeijer, K. Holland, I. Sechopoulos, R. Mann, G. den Heeten and C. van Gils. "High Breast Compression in Mammography May Reduce Sensitivity", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  3. J. Charbonnier, M. Han, E. Pompe, C. Moore, S. Humphries, D. Lynch, van Ginneken B., B. Make and van Rikxoort E.. "CT-based models for prediction of chronic obstructed pulmonary disease and smoking-related morbidity in cigarette smokers", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  4. J. Charbonnier, E. Pompe, C. Moore, S. Humphries, B. van Ginneken, D. Lynch, B. Make and E. van Rikxoort. "Airway Dimensions in Current and Former smokers: an independent predictor of Airflow Obstruction and Respiratory Quality of Life in Cigarette Smokers", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  5. J. Wanders, K. Holland, P. Peeters, N. Karssemeijer and C. van Gils. "Volumetric Breast Density And The Risk Of Screen-Detected And Interval Breast Cancer", in: Annual conference of the International Agency for Research on Cancer, 2016. Abstract

  6. M. Meijs, M. Prokop, F.J. Meijer, B. van Ginneken and R. Manniesing. "Segmentation of small cerebral vessels on CT perfusion images of patients with suspected acute stroke", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract/PDF

  7. R. Becks, M. Meijs, R. Manniesing, J. Vister, S. Schalekamp, R. Mann, S. Steens, E. Smit, E. van Dijk, M. Prokop and F.J. Meijer. "Additional Value of Brain CT Perfusion in The Detection of Intracranial Vessel Occlusion in Acute Ischemic Stroke: A (Multi Experience Level) Inter-Observer Study", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  8. R. Manniesing, S. van de Leemput, M. Prokop and B. van Ginneken. "White Matter and Gray Matter Segmentation in 4D CT Images of Acute Ischemic Stroke Patients: a Feasibility Study", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  9. E.T. Scholten, C. Jacobs, C.M. Schaefer-Prokop, J. Rühaak, H.J. de Koning, M. Oudkerk, P.A. de Jong, M. Prokop and B. van Ginneken. "Temporal subtraction of chest CT in lung cancer screening", in: European Congress of Radiology, 2016. Abstract

  10. J. Charbonnier, D. Lynch, S. Humphries, M. Strand and E. van Rikxoort. "Relative Contributions of Quantitative CT Measures to Airflow Obstruction in Cigarette Smokers", in: American Thoracic Society International Conference, 2016. Abstract

  11. F.G. Venhuizen, M.J.J.P. van Grinsven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Fully automated quantification of intraretinal cysts in 3D optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2016. Abstract

  12. M.J.J.P. van Grinsven, F.G. Venhuizen, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic detection of hemorrhages on color fundus images using deep learning", in: Association for Research in Vision and Ophthalmology, 2016. Abstract

  13. F. Ciompi, K. Chung, A.A.A. Setio, S.J. van Riel, E.T. Scholten, P.K. Gerke, C. Jacobs, U. Pastorino, A. Marchiano, M.M.W. Wille, M. Prokop and B. van Ginneken. "Pulmonary nodule type classification with convolutional networks", in: Medical Image Computing and Computer-Assisted Intervention, 2016. Abstract/PDF

  14. B. Liefers, V. Schreur, T. Theelen and C.I. Sánchez. "Registration and grading of micro-aneurysms in Fluorescein Angiography and OCT Angiography", in: 4th International Congress on OCT Angiography and Advances in OCT, 2016. Abstract

  15. S. Vreemann, A. Gubern-Mérida, C. Borelli, N. Karssemeijer and R. Mann. "Background Parenchymal Enhancement as a predictor of breast cancer grade: a pilot study", in: European Congress of Radiology, 2016. Abstract

  16. S. Vreemann, A. Gubern-Mérida, S. Lardenoije, N. Karssemeijer and R. Mann. "The performance of MRI screening in the detection of breast cancer in an intermediate and high risk screening program", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2016. Abstract

  17. S. Vreemann, A. Gubern-Mérida, S. Lardenoije, N. Karssemeijer and R. Mann. "Differences between cancers detected in prophylactic mastectomy specimen, screen detected cancers and true interval cancers in women participating in an intermediate and high risk screening program", in: European Breast Cancer Conference, 2016. Abstract

  18. S. Vreemann, A. Gubern-Mérida, S. Lardenoije, N. Karssemeijer and R. Mann. "Prognostic factors of interval carcinomas occurring in an intermediate and high risk breast cancer screening program", in: European Congress of Radiology, 2016. Abstract


Theses

  1. M. van Grinsven. "Automated analysis of retinal images for detection of age-related macular degeneration and diabetic retinopathy", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2016. Abstract/PDF URL

  2. W. van de Ven. "MRI guided TRUS prostate biopsy - a viable alternative?", PhD thesis, Radboud Universiteit Nijmegen, 2016. Abstract/PDF URL

  3. N. Moriakov. "Entropy and Kolmogorov complexity", PhD thesis, Delft University of Technology, 2016. Abstract/PDF DOI

  4. J. Teuwen. "Shedding new light on gaussian harmonic analysis", PhD thesis, Delft University of Technology, 2016. Abstract/PDF DOI


Other publications

  1. R. Beichel, K. Farahani, C. Jacobs, S. Kabus, A.P. Kiraly, J.M. Kuhnigk, J. McClelland, K. Mori, J. Petersen and S. Rit. "The Sixth International Workshop on Pulmonary Image Analysis", 2016. Abstract/PDF URL

  2. A. Patel and R. Manniesing. "Automatic interpretation of 4D computed tomography images in acute stroke", 2016. PDF DOI


2015

Papers in international journals

  1. J.D. Jaramillo, C. Wilson, D.S. Stinson, D.J. Stinson, D.A. Lynch, R.P. Bowler, S. Lutz, J.M. Bon, B. Arnold, M.-L.N. McDonald, G.R. Washko, E.S. Wan, D.L. DeMeo, M.G. Foreman, X. Soler, S.E. Lindsay, N.E. Lane, H.K. Genant, E.K. Silverman, J.E. Hokanson, B.J. Make, J.D. Crapo, E.A. Regan and C. Investigators. "Reduced Bone Density and Vertebral Fractures in Smokers. Men and COPD Patients at Increased Risk", Annals of the American Thoracic Society 2015;12:648-656. Abstract DOI PMID 25719895

  2. L.P. Hayden, B.D. Hobbs, R.T. Cohen, R.A. Wise, W. Checkley, J.D. Crapo, C.P. Hersh and COPDGene Investigators. "Childhood pneumonia increases risk for chronic obstructive pulmonary disease: the COPDGene study.", Respir Res 2015;16:115. Abstract DOI PMID 26392057

  3. H.M. van der Holst, I.W.M. van Uden, A.M. Tuladhar, K.F. de Laat, A.G.W. van Norden, D.G. Norris, E.J. van Dijk, R.A.J. Esselink, B. Platel and F.-E. de Leeuw. "Cerebral small vessel disease and incident parkinsonism: The RUN DMC study.", Neurology 2015;85(18):1569-1577. Abstract DOI PMID 26446068

  4. K. Klooster, N.H.T. ten Hacken, J.E. Hartman, H.A.M. Kerstjens, E.M. van Rikxoort and D.-J. Slebos. "Endobronchial Valves for Emphysema without Interlobar Collateral Ventilation", N Engl J Med 2015;373(24):2325-2335. Abstract/PDF DOI PMID 26650153

  5. A. Steiner, C. Mangu, J. van den Hombergh, H. van Deutekom, B. van Ginneken, P. Clowes, F. Mhimbira, S. Mfinanga, A. Rachow, K. Reither and M. Hoelscher. "Screening for pulmonary tuberculosis in a Tanzanian prison and computer-aided interpretation of chest X-rays", Public Health Action 2015;5(4):249-254. Abstract/PDF DOI PMID 26767179

  6. J.D. Jaramillo, C. Wilson, D.S. Stinson, D.J. Stinson, D.A. Lynch, R.P. Bowler, S. Lutz, J.M. Bon, B. Arnold, M.-L.N. McDonald, G.R. Washko, E.S. Wan, D.L. DeMeo, M.G. Foreman, X. Soler, S.E. Lindsay, N.E. Lane, H.K. Genant, E.K. Silverman, J.E. Hokanson, B.J. Make, J.D. Crapo, E.A. Regan and COPD Gene Investigators. "Reduced Bone Density and Vertebral Fractures in Smokers. Men and COPD Patients at Increased Risk.", Ann Am Thorac Soc 2015;12(5):648-656. Abstract DOI PMID 25719895

  7. D. van der Waal, M.J. Emaus, M.F. Bakker, G.J. den Heeten, N. Karssemeijer, R.M. Pijnappel, W.B. Veldhuis, A.L.M. Verbeek, C.H. van Gils and M.J.M. Broeders. "Geographic variation in volumetric breast density between screening regions in the Netherlands.", Eur Radiol 2015;25(11):3328-3337. Abstract DOI PMID 26134996

  8. M.J. Emaus, M.F. Bakker, P.H.M. Peeters, C.E. Loo, R.M. Mann, M.D.F. de Jong, R.H.C. Bisschops, J. Veltman, K.M. Duvivier, M.B.I. Lobbes, R.M. Pijnappel, N. Karssemeijer, H.J. de Koning, M.A.A.J. van den Bosch, E.M. Monninkhof, W.P.T.M. Mali, W.B. Veldhuis and C.H. van Gils. "MR Imaging as an Additional Screening Modality for the Detection of Breast Cancer in Women Aged 50-75 Years with Extremely Dense Breasts: The DENSE Trial Study Design.", Radiology 2015;277(2):527-537. Abstract DOI PMID 26110667

  9. E.T. Scholten, N. Horeweg, H.J. de Koning, R. Vliegenthart, M. Oudkerk, W.P.T.M. Mali and P.A. de Jong. "Computed tomographic characteristics of interval and post screen carcinomas in lung cancer screening.", European Radiology 2015;25(1):81-88. Abstract/PDF DOI PMID 25187382

  10. O. Solyanik, P. Hollmann, S. Dettmer, T. Kaireit, C. Schaefer-Prokop, F. Wacker, J. Vogel-Claussen and H.-O. Shin. "Quantification of Pathologic Air Trapping in Lung Transplant Patients Using CT Density Mapping: Comparison with Other CT Air Trapping Measures", PLoS One 2015;10:e0139102. Abstract DOI PMID 26430890

  11. A.A.A. Setio, C. Jacobs, J. Gelderblom and B. van Ginneken. "Automatic detection of large pulmonary solid nodules in thoracic CT images", Medical Physics 2015;42:5642-5653. Abstract/PDF DOI PMID 26429238

  12. D.-J. Slebos, E.M. van Rikxoort and W. van der Bij. "Air Trapping in Emphysema", American Journal of Respiratory and Critical Care Medicine 2015;192:e45. PDF DOI PMID 26325161

  13. F. Ciompi, B. de Hoop, S.J. van Riel, K. Chung, E.T. Scholten, M. Oudkerk, P.A. de Jong, M. Prokop and B. van Ginneken. "Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box", Medical Image Analysis 2015;26:195-202. Abstract/PDF DOI PMID 26458112

  14. M.M. Teussink, M.B. Breukink, M.J.J.P. van Grinsven, C.B. Hoyng, B.J. Klevering, C.J.F. Boon, E.K. de Jong and T. Theelen. "OCT Angiography Compared to Fluorescein and Indocyanine Green Angiography in Chronic Central Serous Chorioretinopathy", Investigative Ophthalmology and Visual Science 2015;56:5229-5237. Abstract/PDF DOI PMID 26244299

  15. R. Philipsen, C.I. Sánchez, P. Maduskar, J. Melendez, L. Peters-Bax, J. Peter, R. Dawson, G. Theron, K. Dheda and B. van Ginneken. "Automated chest-radiography as a triage for Xpert testing in resource-constrained settings: a prospective study of diagnostic accuracy and costs", Nature Scientific Reports 2015;5. Abstract/PDF DOI PMID 26212560

  16. G.J.S. Litjens, J.O. Barentsz, N. Karssemeijer and H.J. Huisman. "Clinical evaluation of a computer-aided diagnosis system for determining cancer aggressiveness in prostate MRI", European Radiology 2015;25(11):3187-3199. Abstract/PDF DOI PMID 26060063

  17. E.J. Smit, E.-J. Vonken, F.J.A. Meijer, J.W. Dankbaar, A.D. Horsch, B. van Ginneken, B. Velthuis, I. van der Schaaf and M. Prokop. "Timing-Invariant CT Angiography Derived from CT Perfusion Imaging in Acute Stroke: A Diagnostic Performance Study", American Journal of Neuroradiology 2015;36:1834-1838. Abstract/PDF DOI PMID 26113070

  18. M.M. Winkler Wille, S.J. van Riel, Z. Saghir, A. Dirksen, J.H. Pedersen, C. Jacobs, L.H. Thomsen, E.T. Scholten, L.T. Skovgaard and B. van Ginneken. "Predictive Accuracy of the PanCan Lung Cancer Risk Prediction Model -External Validation based on CT from the Danish Lung Cancer Screening Trial", European Radiology 2015;25:3093-3099. Abstract/PDF DOI PMID 25764091

  19. S.J. van Riel, C.I. Sánchez, A.A. Bankier, D.P. Naidich, J. Verschakelen, E.T. Scholten, P.A. de Jong, C. Jacobs, E. van Rikxoort, L. Peters-Bax, M. Snoeren, M. Prokop, B. van Ginneken and C. Schaefer-Prokop. "Observer Variability for Classification of Pulmonary Nodules on Low-Dose CT Images and Its Effect on Nodule Management", Radiology 2015;277(3):863-871. Abstract/PDF DOI PMID 26020438

  20. E. Pompe, E.M. van Rikxoort, M. Schmidt, J. Rühaak, L. Gallardo-Estrella, R. Vliegenthart, M. Oudkerk, H.J. de Koning, B. van Ginneken, P.A. de Jong, J.-W.J. Lammers and F.A.A. Mohamed Hoesein. "Parametric response mapping adds value to current computed tomography biomarkers in diagnosing chronic obstructive pulmonary disease", American Journal of Respiratory and Critical Care Medicine 2015;191:1084-1086. PDF DOI PMID 25932766

  21. J. Ramos, T. Kockelkorn, I. Ramos, R. Ramos, B. van Ginneken, M. Viergever, A. Campilho and J. Grutters. "Content Based Image Retrieval by Metric Learning from Radiology Reports: Application to Interstitial Lung Diseases", IEEE Journal of Biomedical Health Informatics 2015;20(1):281-292. Abstract/PDF DOI PMID 25438332

  22. M.M. Teussink, B. Cense, M.J.J.P. van Grinsven, B.J. Klevering, C.B. Hoyng and T. Theelen. "Impact of motion-associated noise on intrinsic optical signal imaging in humans with optical coherence tomography", Biomedical Optics Express 2015;6:1632-1647. Abstract/PDF DOI PMID 26137369

  23. R. Philipsen, P. Maduskar, L. Hogeweg, J. Melendez, C.I. Sánchez and B. van Ginneken. "Localized energy-based normalization of medical images: application to chest radiography", IEEE Transactions on Medical Imaging 2015;34:1965-75. Abstract/PDF DOI PMID 25838517

  24. L. Hogeweg, C.I. Sánchez, P. Maduskar, R. Philipsen, A. Story, R. Dawson, G. Theron, K. Dheda, L. Peters-Bax and B. van Ginneken. "Automatic detection of tuberculosis in chest radiographs using a combination of textural, focal, and shape abnormality analysis", IEEE Transactions on Medical Imaging 2015;34(12):2429-2442. Abstract/PDF DOI PMID 25706581

  25. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, H.J.M. Groen, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Airway wall thickness associated with forced expiratory volume in 1 second decline and development of airflow limitation", European Respiratory Journal 2015;45:644-651. Abstract/PDF DOI PMID 25614166

  26. A.M. Bluekens, W.J. Veldkamp, K.H. Schuur, N. Karssemeijer, M.J. Broeders and G.J. den Heeten. "The potential use of ultra-low radiation dose images in digital mammography - a clinical proof-of-concept study in craniocaudal views", British Journal of Radiology 2015;88:20140626. Abstract/PDF DOI PMID 25571915

  27. A. Gubern-Mérida, M. Kallenberg, R.M. Mann, R. Marti and N. Karssemeijer. "Breast Segmentation and Density Estimation in Breast MRI: A Fully Automatic Framework", IEEE Journal of Biomedical and Health Informatics 2015;19:349-357. Abstract/PDF DOI PMID 25561456

  28. B.C. Lassen, C. Jacobs, J.-M. Kuhnigk, B. van Ginneken and E.M. van Rikxoort. "Robust semi-automatic segmentation of pulmonary subsolid nodules in chest computed tomography scans", Physics in Medicine and Biology 2015;60:1307-1323. Abstract/PDF DOI PMID 25591989

  29. M.J.J.P. van Grinsven, G.H.S. Buitendijk, C. Brussee, B. van Ginneken, C.B. Hoyng, T. Theelen, C.C.W. Klaver and C.I. Sánchez. "Automatic identification of reticular pseudodrusen using multimodal retinal image analysis", Investigative Ophthalmology and Visual Science 2015;56(1):633-639. Abstract/PDF DOI PMID 25574052

  30. A.E. Dijkstra, D.S. Postma, B. van Ginneken, M.O. Wielpütz, M. Schmidt, N. Becker, M. Owsijewitsch, H.-U. Kauczor, H.J. de Koning, J.W. Lammers, M. Oudkerk, C.-A. Brandsma, Y. Bossé, D.C. Nickle, D.D. Sin, P.S. Hiemstra, C. Wijmenga, J. Smolonska, P. Zanen, J.M. Vonk, M. van den Berge, H.M. Boezen and H.J.M. Groen. "Novel Genes for Airway Wall Thickness Identified with Combined Genome Wide Association and Expression Analyses", American Journal of Respiratory and Critical Care Medicine 2015;191:547-556. Abstract/PDF DOI PMID 25517131

  31. C. Jacobs, E.M. van Rikxoort, E.T. Scholten, P.A. de Jong, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Solid, Part-Solid, or Non-solid?: Classification of Pulmonary Nodules in Low-Dose Chest Computed Tomography by a Computer-Aided Diagnosis System", Investigative Radiology 2015;50:168-173. Abstract/PDF DOI PMID 25478740

  32. E.T. Scholten, P.A. de Jong, B. de Hoop, R. van Klaveren, S. van Amelsvoort-van de Vorst, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, R.M. Vernhout, H.J.M. Groen, J.-W.J. Lammers, B. van Ginneken, C. Jacobs, W.P.T.M. Mali, N. Horeweg, C. Weenink, E. Thunnissen, M. Prokop and H.A. Gietema. "Towards a close computed tomography monitoring approach for screen detected subsolid pulmonary nodules?", European Respiratory Journal 2015;45:765-773. Abstract/PDF DOI PMID 25431271

  33. A. Gubern-Mérida, R. Marti, J. Melendez, J. Hauth, R. Mann, N. Karssemeijer and B. Platel. "Automated localization of breast cancer in DCE-MRI", Medical Image Analysis 2015;20(1):265-274. Abstract/PDF DOI PMID 25532510

  34. F. Ciompi, C. Jacobs, E. Scholten, M. Winkler Wille, P. de Jong, M. Prokop and B. van Ginneken. "Bag of frequencies: a descriptor of pulmonary nodules in Computed Tomography images", IEEE Transactions on Medical Imaging 2015;34:1-12. Abstract/PDF DOI PMID 25420257

  35. E.T. Scholten, P.A. de Jong, C. Jacobs, B. van Ginneken, S. van Riel, M.J. Willemink, R. Vliegenthart, M. Oudkerk, H.J. de Koning, N. Horeweg, M. Prokop, W.P.T.M. Mali and H.A. Gietema. "Interscan variation of semi-automated volumetry of subsolid pulmonary nodules", European Radiology 2015;25:1040-1047. Abstract/PDF DOI PMID 25413965

  36. H.G.J. Kortman, E.J. Smit, M.T.H. Oei, R. Manniesing, M. Prokop and F.J.A. Meijer. "4D-CTA in Neurovascular Disease: A Review", American Journal of Neuroradiology 2015;36:1026-1033. Abstract/PDF DOI PMID 25355812

  37. J. Melendez, B. van Ginneken, P. Maduskar, R.H.H.M. Philipsen, K. Reither, M. Breuninger, I.M.O. Adetifa, R. Maane, H. Ayles and C.I. Sánchez. "A Novel Multiple-Instance Learning-Based Approach to Computer-Aided Detection of Tuberculosis on Chest X-Rays", IEEE Transactions on Medical Imaging 2015;34:179-192. Abstract/PDF DOI PMID 25163057

  38. M. Pokorny, W. Van de Ven, J. Barentsz and L. Thompson. "Reply to Yaalini Shanmugabavan, Stephanie Guillaumier and Hashim U. Ahmed's Letter to the Editor re: Morgan R. Pokorny, Maarten de Rooij, Earl Duncan, et al. Prospective Study of Diagnostic Accuracy Comparing Prostate Cancer Detection by Transrectal Ultrasound-Guided Biopsy Versus Magnetic Resonance (MR) Imaging with Subsequent MR-guided Biopsy in Men Without Previous Prostate Biopsies. Eur Urol 2014;66:22-9", European Urology 2015;67:e54-e55. PDF DOI PMID 25194908

  39. E.T. Scholten, C. Jacobs, B. van Ginneken, S. van Riel, R. Vliegenthart, M. Oudkerk, H.J. de Koning, N. Horeweg, M. Prokop, H.A. Gietema, W.P.T.M. Mali and P.A. de Jong. "Detection and quantification of the solid component in pulmonary subsolid nodules by semiautomatic segmentation", European Radiology 2015;25:488-496. Abstract/PDF DOI PMID 25287262

  40. R.A.P. Takx, R. Vliegenthart, F.A.A. Mohamed Hoesein, I. Išgum, H.J. de Koning, W.P.T.M. Mali, C.M. van der Aalst, P. Zanen, J.-W.J. Lammers, H.J.M. Groen, E.M. van Rikxoort, M. Schmidt, B. van Ginneken, M. Oudkerk, T. Leiner and P.A. de Jong. "Pulmonary function and CT biomarkers as risk factors for cardiovascular events in male lung cancer screening participants: the NELSON study", European Radiology 2015;25:65-71. Abstract/PDF DOI PMID 25182625

  41. T. Tan, J.-J. Mordang, J. van Zelst, A. Grivegnée, A. Gubern-Mérida, J. Melendez, R.M. Mann, W. Zhang, B. Platel and N. Karssemeijer. "Computer-aided detection of breast cancers using Haar-like features in automated 3D breast ultrasound", Medical Physics 2015;42:1498-1504. Abstract/PDF DOI PMID 25832040

  42. J. Teuwen. "A note on Gaussian maximal function", Indagationes Mathematicae 2015;26(1):106-112. Abstract/PDF DOI

  43. J.C. Van Zelst, B. Platel, N. Karssemeijer and R.M. Mann. "Multiplanar reconstructions of 3D automated breast ultrasound improve lesion differentiation by radiologists", Academic radiology 2015;22(12):1489-1496. Abstract DOI


Papers in conference proceedings

  1. A.M. Mendrik, E.-j. Vonken, T. Witkamp, M. Prokop, B. van Ginneken and M.A. Viergever. "Using the Fourth Dimension to Distinguish Between Structures for Anisotropic Diffusion Filtering in 4D CT Perfusion Scans", in: Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, volume 8682 of Lecture Notes in Computer Science, 2015, pages 79-87.

  2. E. Garcia, A. Oliver, Y. Diez, D.O., J. Georgii, A. Gubern-Mérida, J. Martí and R. Martí. "Comparing regional breast density using Full-Field Digital Mammograms and Magnetic Resonance Imaging: A preliminary study", in: MICCAI Workshop: Breast Image Analysis, 2015. PDF

  3. A. Gubern-Mérida, T. Tan, J. van Zelst, R.M. Mann, B. Platel and N. Karssemeijer. "Pectoral muscle surface segmentation in automated 3D breast ultrasound using cylindrical transform and atlas information", in: MICCAI Workshop: Breast Image Analysis, 2015. PDF

  4. J. Schwaab, A. Gubern-Mérida, L. Wang and M. Gunther. "Automatic assessment of nipple position in Automated 3D Breast Ultrasound images", in: MICCAI Workshop: Breast Image Analysis, 2015. PDF

  5. M. Razavi, L. Wang, A. Gubern-Mérida, T. Ivanovska, H. Laue, N. Karssemeijer and H.K. Hahn. "Towards Accurate Segmentation of Fibroglandular Tissue in Breast MRI Using Fuzzy C-Means and Skin-Folds Removal", in: Image Analysis and Processing—ICIAP 2015, 2015, pages 528-536. PDF

  6. M. Meijs, O.A. Debats and H.J. Huisman. "The evaluation of multi-structure, multi-atlas pelvic anatomy features in a prostate MR Lymphography CAD system", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94140T. Abstract/PDF DOI

  7. J.-J. Mordang and N. Karssemeijer. "Vessel segmentation in screening mammograms", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94140J. Abstract/PDF DOI

  8. B. van Ginneken, A.A.A. Setio, C. Jacobs and F. Ciompi. "Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans", in: IEEE International Symposium on Biomedical Imaging, 2015, pages 286-289. Abstract/PDF DOI

  9. L. Wang, J. Strehlow, J. Ruehaak, F. Weiler, Y. Diez, A. Gubern-Mérida, S. Diekmann, H. Laue and H.K. Hahn. "A fast alignment method for breast MRI follow-up studies using automated breast segmentation and current-prior registration", in: Medical Imaging, volume 9413 of Proceedings of the SPIE, 2015, pages 941334-941334-8. Abstract/PDF DOI

  10. A.A.A. Setio, C. Jacobs, F. Ciompi, S.J. van Riel, M.M.W. Wille, A. Dirksen, E.M. van Rikxoort and B. van Ginneken. "Computer-aided detection of lung cancer: combining pulmonary nodule detection systems with a tumor risk prediction model", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015. Abstract/PDF DOI

  11. F.G. Venhuizen, B. van Ginneken, B. Bloemen, M.J.J.P. van Grinsven, R. Philipsen, C. Hoyng, T. Theelen and C.I. Sánchez. "Automated Age-Related Macular Degeneration Classification in OCT using Unsupervised Feature Learning", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015. Abstract/PDF DOI

  12. B. Ehteshami Bejnordi, G. Litjens, M. Hermsen, N. Karssemeijer and J.A.W.M. van der Laak. "A multi-scale superpixel classification approach for region of interest detection in whole slide histopathology images", in: Medical Imaging, volume 9420 of Proceedings of the SPIE, 2015, page 94200H. Abstract/PDF DOI

  13. S. van de Leemput, F. Dorssers and B. Ehteshami Bejnordi. "A novel spherical shell filter for reducing false positives in automatic detection of pulmonary nodules in thoracic CT scans", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94142P. Abstract/PDF DOI

  14. G. Litjens, B. Ehteshami Bejnordi, N. Timofeeva, G. Swadi, I. Kovacs, C.A. Hulsbergen-van de Kaa and J.A.W.M. van der Laak. "Automated detection of prostate cancer in digitized whole-slide images of H&E-stained biopsy specimens", in: Medical Imaging, volume 9420 of Proceedings of the SPIE, 2015, page 94200B. Abstract/PDF DOI

  15. M. Ghafoorian, N. Karssemeijer, F.E. de Leeuw, T. Heskes, E. Marchiori and B. Platel. "Small White Matter Lesion Detection in Cerebral Small Vessel Disease", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 941411. Abstract/PDF DOI

  16. T.L.A. van den Heuvel, M. Ghafoorian, A.W. van der Eerden, B.M. Goraj, T.M.J.C. Andriessen, B.M. ter Haar Romeny and B. Platel. "Computer Aided Detection of Brain Micro-Bleeds in Traumatic Brain Injury", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015, page 94142F. Abstract/PDF DOI

  17. F. Ciompi, C. Jacobs, E.T. Scholten, S. van Riel, M.M.W. Wille, M. Prokop and B. van Ginneken. "Automatic detection of spiculation of pulmonary nodules in Computed Tomography images", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015. Abstract/PDF DOI


Abstracts

  1. F.G. Venhuizen, M.B. Breukink, B. van Ginneken, M.J.J.P. van Grinsven, B. Bloemen, C.B. Hoyng, T. Theelen, C.J.F. Boon and C.I. Sánchez. "Automated Quantification of Subretinal Fluid in Central Serous Chorioretinopathy in 3D Optical Coherence Tomography Images", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  2. J. Wanders, K. Holland, W. Veldhuis, R. Mann, P. Peeters, C. van Gils and N. Karssemeijer. "Effect of volumetric mammographic density on performance of a breast cancer screening program using full-field digital mammography", in: European Congress of Radiology, 2015. Abstract

  3. J. Charbonnier, M. Brink, F. Ciompi, E.T. Scholten, C.M. Schaefer-Prokop and E.M. Van Rikxoort. "Automatic Separation and Classification of Arteries and Veins in Non-Contrast Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  4. J. Charbonnier, L. Hogeweg, J. Kuhnigk, D.A. Lynch and E.M. Van Rikxoort. "Sensitivity of airway wall thickness measurements: influence of small airways", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  5. M. Dalmis, A. Gubern-Mérida, S. Vreemann, R. Mann, N. Karssemeijer and B. Platel. "Early Phase Contrast Enhancement Dynamics of Breast Lesions of Different Molecular Subtypes Characterized by a Computer-Aided-Diagnosis System", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  6. A. Gubern-Mérida, T. Tan, J. van Zelst, R.M. Mann, B. Platel and N. Karssemeijer. "Evaluation of a Novel Method to Segment the Pectoral Muscle Surface in Automated Whole Breast Ultrasound", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  7. A. Gubern-Mérida, S. Vreemann, R. Marti, J. Melendez, R.M. Mann, B. Platel and N. Karssemeijer. "Automated Detection of Mass-like, Non-mass-like and Focus Breast Cancer Lesions Visible in False-negative Screening DCE-MRI", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  8. L. Wang, A. Gubern-Mérida, S.D. Diekmann, R.M. Mann, H.O. Laue and H.K. Hahn. "Automatic Spatial Linking of Lesions in Breast MRI Follow-up Images", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  9. S. van Riel, F. Ciompi, M.W. Wille, M. Naqibullah, E. Scholten, C. Schaefer-Prokop and B. van Ginneken. "Lung-RADS versus the McWilliams nodule malignancy score for risk prediction: an evaluation using lesions from the DLCST Trial", in: World Conference on Lung Cancer, 2015. Abstract

  10. S. van Riel, F. Ciompi, M.W. Wille, E. Scholten, A. Dirksen, K. Chung, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Comparing LungRADS and the McWilliams nodule malignancy score: which approach works best to select screen detected pulmonary nodules for more aggressive followup?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  11. S. van Riel, F. Ciompi, M.W. Wille, E. Scholten, N. Sverzellati, S. Rossi, A. Dirksen, M. Brink, R. Wittenberg, M. Naqibullah, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Can morphological features differentiate between malignant and benign pulmonary nodules, detected in a screen setting?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  12. K. Holland, C. van Gils, J. Wanders, R. Mann and N. Karssemeijer. "How can we identify women at risk for a masked cancer, who may benefit from supplemental screening?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  13. K. Holland, C. van Gils, J. Wanders, R. Mann and N. Karssemeijer. "Optimisation of the selection of women with an increased risk of a masked tumour for supplementary screening", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  14. K. Holland, C. van Gils, J. Wanders, R. Mann and N. Karssemeijer. "Consistency of density categories over multiple screening rounds using volumetric breast density", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  15. M. Kallenberg, M. Lillholm, P. Diao, K. Petersen, K. Holland, N. Karssemeijer, C. Igel and M. Nielsen. "Assessing Breast Cancer Masking Risk with Automated Texture Analysis in Full Field Digital Mammography", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  16. F.G. Venhuizen, M.J. van Grinsven, C.B. Hoyng, T. Theelen, B. van Ginneken and C.I. Sanchez. "Vendor Independent Cyst Segmentation in Retinal SD-OCT Volumes using a Combination of Multiple Scale Convolutional Neural Networks", in: Medical Image Computing and Computer-Assisted Intervention, 2015. Abstract/PDF

  17. A. Ritchie, C. Sanghera, C. Jacobs, W. Zhang, J. Mayo, H. Roberts, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tammemagi and S. Lam. "Computer Vision Tool and Technician as First Reader of Lung Cancer Screening CT", in: World Conference on Lung Cancer, 2015. Abstract

  18. A. Ritchie, M. Tammemagi, C. Jacobs, W. Zhang, J. Mayo, H. Roberts, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tsao and S. Lam. "Automated measurement of malignancy risk of lung nodule detected by screening computed tomography", in: World Conference on Lung Cancer, 2015. Abstract

  19. E. Scholten, C. Jacobs, B. van Ginneken, S. van Riel, R. Vliegenthart, M. Oudkerk, M. Prokop, H. Gietema and P. de Jong.. "Detection and quantification of the solid component in pulmonary subsolid nodules by semiautomatic segmentation", in: European Congress of Radiology, 2015. Abstract/PDF

  20. P. Maduskar, I. Adetifa, J. van den Hombergh, E. Leroy-Terquem, A. Fasan-Odunsi, C.I. Sánchez, U. d'Alessandro and B. van Ginneken. "Computerized Reading of Chest Radiographs in The Gambia National Tuberculosis Prevalence Survey: Retrospective Comparison with Human Experts", in: Union World Conference on Lung Health, 2015. Abstract

  21. R.H. Philipsen, C.I. Sánchez, P. Maduskar, J. Melendez, B. van Ginneken and W. Lew. "Objective Computerized Chest Radiography Screening to Detect Tuberculosis in the Philippines", in: Union World Conference on Lung Health, 2015. Abstract

  22. K. Holland, A. Gubern-Mérida, R. Mann and N. Karssemeijer. "Improved volumetric breast density assessment in dense breasts", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015. Abstract

  23. M. Kallenberg, M. Lillholm, P. Diao, K. Holland, N. Karssemeijer, C. Igel and M. Nielsen. "Assessing breast cancer masking risk in full field digital mammography with automated texture analysis", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  24. J.O.P. Wanders, K. Holland, P.H.M. Peeters, N. Karssemeijer and C.H. van Gils. "Combined effect of dense and nondense breast volume on breast cancer risk", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  25. J.O.P. Wanders, K. Holland, P.H.M. Peeters, N. Karssemeijer and C.H. van Gils. "Volumetric breast density and the risk of screen detected and interval breast cancer", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  26. J.O.P. Wanders, K. Holland, W.B. Veldhuis, R.M. Mann, P.H.M. Peeters, C.H. van Gils and N. Karssemeijer. "Effect of volumetric mammographic density on performance of a breast cancer screening program using full-field digital mammography", in: 7th International Workshop on Breast Densitometry and Cancer Risk Assessment, 2015.

  27. R. Arntz, S. van den Broek, L. Rutten-Jacobs, N. Maaijwee, I. van Uden, M. Ghafoorian, B. Platel, E. van Dijk and F. de Leeuw. "Small vessel disease after stroke at young age: the FUTURE-study", in: European Stroke Organization, 2015.

  28. V. Lohner, I. van Uden, H. van der Holst, A. Tuladhar, A. van Norden, M. Bergkamp, K. de Laat, R. Arntz, M. Ghafoorian, B. Platel, E. van Dijk and F. de Leeuw. "Run away from small vessel disease: physical activity reduces progression of white matter hyperintensities: the RUN DMC study", in: European Stroke Organization, 2015.

  29. I. van Uden, H. van der Holst, A. Tuladhar, A. van Norden, K. de Laat, R. Arntz, M. Ghafoorian, B. Platel, J. Claassen, R. Kessels, E. van Dijk and F. de Leeuw. "Both WMH increase and decline increase the risk of incident dementia; a prospective cohort study: the RUN DMC study", in: European Stroke Organization, 2015.

  30. S. van Riel, K. Chung, E. Scholten, P. de Jong, C. Schaefer-Prokop and B. van Ginneken. "ACR Lung-RADS guidelines for pure ground-glass nodules: is a threshold of 20mm adequate?", in: ECR, 2015. Abstract

  31. C.I. Sánchez, S. Lambertus, B. Bloemen, N. Bax, F.G. Venhuizen, M.J.J.P. van Grinsven, B. van Ginneken, T. Theelen and C. Hoyng. "Automatic quantification of geographic atrophy in fundus autofluorescence images of Stargardt patients", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  32. K. Chung, E. Scholten, S. van Riel, F. Ciompi, P. de Jong, M. Wille, M. Prokop, B. van Ginneken and C. Schaefer-Prokop. "Differentiation of persistent and transient subsolid nodules: does morphology help?", in: European Congress of Radiology, 2015. Abstract

  33. S. Vreemann, A. Gubern-Mérida, S. Lardenoije, B. Platel, N. Karssemeijer and R. Mann. "A critical audit of a breast MRI screening programme for intermediate and high risk patients in clinical practice", in: European Congress of Radiology, 2015. Abstract

  34. M. Dalmis, A. Gubern-Mérida, S. Vreemann, B. Platel, R. Mann and N. Karssemeijer. "Is Late Phase Information Necessary for Dynamic Evaluation of Breast Cancer?", in: European Congress of Radiology, 2015. Abstract

  35. A. Gubern-Mérida, S. Vreemann, R. Marti, J. Melendez, S. Lardenoije, R.M. Mann, B. Platel and N. Karssemeijer. "Automated detection of breast cancer as an aid in the interpretation of screening MRI", in: European Congress of Radiology, 2015. Abstract

  36. L. Wang, A. Gubern-Mérida, O. Diaz, Y. Diez, R.M. Mann, S. Diekmann, F. Zohrer, H. Laue and J. Schwaab. "Automated detection of motion in breast DCE-MRI to assess study quality and prevent unnecessary call-backs", in: ECR, 2015. PDF DOI

  37. M.G. Kallenberg, K. Petersen, M. Lillholm, D.R. Jørgensen, P. Diao, K. Holland, N. Karssemeijer, C. Igel and M. Nielsen. "Automated texture scoring for assessing breast cancer masking risk in full field digital mammography", in: ECR, 2015. Abstract

  38. M.J.J.P. van Grinsven, F.G. Venhuizen, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic detection of eye diseases using automated color fundus image analysis", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  39. E. Pompe, P. De Jong, E. Van Rikxoort, L. Gallardo-Estrella, W. De Jong, R. Vliegenthart, M. Oudkerk, C. Van der Aalst, B. Van Ginneken, J.-W. Lammers and F. Mohamed Hoesein. "Bone density is associated with emphysema and air trapping on CT in smokers", in: American Thoracic Society International Conference, 2015. Abstract DOI

  40. S. Vreemann, A. Gubern-Mérida, S. Lardenoije, B. Platel, N. Karssemeijer and R. Mann. "Breast cancers not detected by MRI in a high and intermediate risk screening program", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  41. S. Vreemann, A. Gubern-Mérida, S. Lardenoije, B. Platel, N. Karssemeijer and R. Mann. "Longitudinal results of a breast MRI screening program for patients at high and intermediate risk; does BRCA status matter?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract


Theses

  1. B. Lassen-Schmidt. "Automatic and Interactive Segmentation of Pulmonary Lobes and Nodules in Chest CT Images", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  2. C. Jacobs. "Automatic detection and characterization of pulmonary nodules in thoracic CT images", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  3. P. Maduskar. "Automated analysis of tuberculosis in chest radiographs", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  4. J. Melendez. "Improving computer-aided detection systems through advanced pattern recognition techniques", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  5. S. Schalekamp. "Advanced processing in chest radiography: impact on observer performance", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  6. A. Gubern-Mérida. "Automated Analysis of Magnetic Resonance Imaging of the Breast", PhD thesis, Radboud Universiteit Nijmegen / Universitat de Girona, 2015. Abstract/PDF URL

  7. G.J.S. Litjens. "Computerized detection of cancer in multi-parametric prostate MRI", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL


2014

Papers in international journals

  1. N. Horeweg, J. van Rosmalen, M.A. Heuvelmans, C.M. van der Aalst, R. Vliegenthart, E.T. Scholten, K. ten Haaf, K. Nackaerts, J.-W.J. Lammers, C. Weenink and others. "Lung cancer probability in patients with CT-detected pulmonary nodules: a prespecified analysis of data from the NELSON trial of low-dose CT screening", The Lancet Oncology 2014;15(12):1332-1341.

  2. C. Schaefer-Prokop. "[HRCT patterns of the most important interstitial lung diseases]", Radiologe 2014;54:1170-1179. Abstract/PDF DOI PMID 25503518

  3. N. Horeweg, E.T. Scholten, P.A. de Jong, C.M. van der Aalst, C. Weenink, J.-W.J. Lammers, K. Nackaerts, R. Vliegenthart, K. Ten Haaf, U.A. Yousaf-Khan, M.A. Heuvelmans, E. Thunnissen, M. Oudkerk, W. Mali and H.J. de Koning. "Detection of lung cancer through low-dose CT screening (NELSON): a prespecified analysis of screening test performance and interval cancers", Lancet Oncology 2014;15:1342-1350. Abstract/PDF DOI PMID 25282284

  4. G.J. Litjens, H.J. Huisman, R.M. Elliott, N.N. Shih, M.D. Feldman, S. Viswanath, J.J. Fütterer, J.G. Bomers and A. Madabhushi. "Quantitative identification of magnetic resonance imaging features of prostate cancer response following laser ablation and radical prostatectomy", Journal of Medical Imaging 2014;1:035001-035001. URL

  5. C. Gatta and F. Ciompi. "Stacked sequential scale-space taylor context", IEEE Transactions on Pattern Analysis and Machine Intelligence 2014;36(8):1694-1700. Abstract/PDF

  6. G. Karemore, M. Nielsen, N. Karssemeijer and S.S. Brandt. "A method to determine the mammographic regions that show early changes due to the development of breast cancer", Physics in Medicine and Biology 2014;59:6759-6773. Abstract/PDF DOI PMID 25327697

  7. S. Schalekamp, B. van Ginneken, I.A.H. van den Berk, I.J.C. Hartmann, M.M. Snoeren, A.E. Odink, W. van Lankeren, S.A.H. Pegge, L.J. Schijf, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppression increases the visibility of invasive pulmonary aspergillosis in chest radiographs", PLoS One 2014;9:e108551. Abstract/PDF DOI PMID 25279774

  8. N. Saksens, E. Kersten, J.M.M. Groenewoud, M.J.J.P. van Grinsven, J.P.H. van de Ven, C.I. Sánchez, T. Schick, S. Fauser, A. den Hollander, C. Hoyng and C.J.F. Boon. "Clinical characteristics of familial and sporadic age-related macular degeneration: differences and similarities", Investigative Ophthalmology and Visual Science 2014;55:7085-7092. Abstract/PDF DOI PMID 25301878

  9. M. Breuninger, B. van Ginneken, R.H.H.M. Philipsen, F. Mhimbira, J.J. Hella, F. Lwilla, J. van den Hombergh, A. Ross, L. Jugheli, D. Wagner and K. Reither. "Diagnostic accuracy of computer-aided detection of pulmonary tuberculosis in chest radiographs: a validation study from sub-saharan Africa", PLoS One 2014;9:e106381. Abstract/PDF DOI PMID 25192172

  10. B. Platel, R. Mus, T. Welte, N. Karssemeijer and R. Mann. "Automated Characterization of Breast Lesions Imaged with an Ultrafast DCE-MR Protocol", IEEE Transactions on Medical Imaging 2014:225-232. Abstract/PDF DOI PMID 24058020

  11. S. Schalekamp, B. van Ginneken, E. Koedam, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Computer-aided detection improves detection of pulmonary nodules in chest radiographs beyond the support by bone-suppressed images", Radiology 2014;272:252-261. Abstract/PDF DOI PMID 24635675

  12. S. Schalekamp, B. van Ginneken, C.M. Schaefer-Prokop and N. Karssemeijer. "Influence of study design in receiver operating characteristics studies: sequential versus independent reading", Journal of Medical Imaging 2014;1:015501-015501. Abstract/PDF DOI

  13. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, O.M. Mets, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Contribution of CT Quantified Emphysema, Air Trapping and Airway Wall Thickness on Pulmonary Function in Male Smokers With and Without COPD", COPD 2014;11:503-509. Abstract/PDF DOI PMID 25093696

  14. T.T.J.P. Kockelkorn, C.M. Schaefer-Prokop, G. Bozovic, A. Muñoz-Barrutia, E.M. van Rikxoort, M.S. Brown, P.A. de Jong, M.A. Viergever and B. van Ginneken. "Interactive lung segmentation in abnormal human and animal chest CT scans", Medical Physics 2014;41:081915. Abstract/PDF DOI PMID 25086546

  15. J. Melendez, C.I. Sánchez, B. van Ginneken and N. Karssemeijer. "Improving mass candidate detection in mammograms via feature maxima propagation and local feature selection", Medical Physics 2014;41:081904. Abstract/PDF DOI PMID 25086535

  16. C. Schaefer-Prokop, H. Prosch and M. Prokop. "[Lung cancer screening. What have we learnt for the practice so far?]", Radiologe 2014;54:462-469. Abstract/PDF DOI PMID 24824379

  17. R.D. Rudyanto, S. Kerkstra, E.M. van Rikxoort, C. Fetita, P.-Y. Brillet, C. Lefevre, W. Xue, X. Zhu, J. Liang, I. Öksüz, D. Ãœnay, K. Kadipasaoglu, R.S.J. Estépar, J.C. Ross, G.R. Washko, J.-C. Prieto, M.H. Hoyos, M. Orkisz, H. Meine, M. Hüllebrand, C. Stöcker, F.L. Mir, V. Naranjo, E. Villanueva, M. Staring, C. Xiao, B.C. Stoel, A. Fabijanska, E. Smistad, A.C. Elster, F. Lindseth, A.H. Foruzan, R. Kiros, K. Popuri, D. Cobzas, D. Jimenez-Carretero, A. Santos, M.J. Ledesma-Carbayo, M. Helmberger, M. Urschler, M. Pienn, D.G. Bosboom, A. Campo, M. Prokop, P.A. de Jong, C.O. de Solorzano, A. Muñoz-Barrutia and B. van Ginneken. "Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: The VESSEL12 study", Medical Image Analysis 2014;18:1217-1232. Abstract/PDF DOI PMID 25113321

  18. H. Liu, T. Tan, J. van Zelst, R. Mann, N. Karssemeijer and B. Platel. "Incorporating texture features in a computer-aided breast lesion diagnosis system for automated three-dimensional breast ultrasound", Journal of Medical Imaging 2014;1:024501-024501. Abstract/PDF DOI

  19. P. Maduskar, L. Hogeweg, P.A. de Jong, L. Peters-Bax, R. Dawson, H. Ayles, C.I. Sánchez and B. van Ginneken. "Cavity contour segmentation in chest radiographs using supervised learning and dynamic programming", Medical Physics 2014;41:071912-1 - 071912-15. Abstract/PDF DOI PMID 24989390

  20. G. Deslee, K. Klooster, M. Hetzel, F. Stanzel, R. Kessler, C.-H. Marquette, C. Witt, S. Blaas, W. Gesierich, F.J.F. Herth, J. Hetzel, E.M. van Rikxoort and D.-J. Slebos. "Lung volume reduction coil treatment for patients with severe emphysema: a European multicentre trial", Thorax 2014;69:980-986. Abstract/PDF DOI PMID 24891327

  21. M. Muyoyeta, P. Maduskar, M. Moyo, N. Kasese, D. Milimo, R. Spooner, N. Kapata, L. Hogeweg, B. van Ginneken and H. Ayles. "The Sensitivity and Specificity of Using a Computer Aided Diagnosis Program for Automatically Scoring Chest X-Rays of Presumptive TB Patients Compared with Xpert MTB/RIF in Lusaka Zambia", PLoS One 2014;9(4):e93757. Abstract/PDF DOI PMID 24705629

  22. R. van den Boom, R. Manniesing, M.T.H. Oei, W.-J. van der Woude, E.J. Smit, H.O.A. Laue, B. van Ginneken and M. Prokop. "A 4D Digital Phantom for Patient-Specific Simulation of Brain CT Perfusion Protocols", Medical Physics 2014;41:071907-1 - 071907-9. Abstract/PDF DOI PMID 24989385

  23. O. Gishti, R. Gaillard, R. Manniesing, M. Abrahamse-Berkeveld, E.M. van der Beek, D.H. Heppe, E.A. Steegers, A. Hofman, L. Duijts, B. Durmus and V.W. Jaddoe. "Fetal and infant growth patterns associated with total and abdominal fat distribution in school-age children", Journal of Clinical Endocrinology and Metabolism 2014;99:2557-2566. Abstract/PDF DOI PMID 24712569

  24. S. Dettmer, L. Peters, C. de Wall, C. Schaefer-Prokop, M. Schmidt, G. Warnecke, J. Gottlieb, F. Wacker and H.-O. Shin. "Bronchial wall measurements in patients after lung transplantation: evaluation of the diagnostic value for the diagnosis of bronchiolitis obliterans syndrome", PLoS One 2014;9:e93783. Abstract/PDF DOI PMID 24713820

  25. R.M. Mann, R.D. Mus, J. van Zelst, C. Geppert, N. Karssemeijer and B. Platel. "A Novel Approach to Contrast-Enhanced Breast Magnetic Resonance Imaging for Screening: High-Resolution Ultrafast Dynamic Imaging", Investigative Radiology 2014;49:579-585. Abstract/PDF DOI PMID 24691143

  26. K. Klooster, N. ten Hacken, I. Franz, H. Kerstjens, E.M. van Rikxoort and D.J. Slebos. "Lung Volume Reduction Coil Treatment in Chronic Obstructive Pulmonary Disease Patients with Homogeneous Emphysema: A Prospective Feasibility Trial", Respiration 2014;88:116-125. Abstract/PDF DOI PMID 24902999

  27. B. Durmus, D.H. Heppe, O. Gishti, R. Manniesing, M. Abrahamse-Berkeveld, E.M. van der Beek, A. Hofman, L. Duijts, R. Gaillard and V.W. Jaddoe. "General and abdominal fat outcomes in school-age children associated with infant breastfeeding patterns", American Journal of Clinical Nutrition 2014;12:1351-1358. Abstract/PDF DOI PMID 24622802

  28. S. Schalekamp, B. van Ginneken, B. Heggelman, M. Imhof-Tas, I. Somers, M. Brink, M. Spee, C. Schaefer-Prokop and N. Karssemeijer. "New methods for using computer-aided detection information for the detection of lung nodules on chest radiographs", British Journal of Radiology 2014;87:20140015. Abstract/PDF DOI PMID 24625084

  29. G. Litjens, O. Debats, J. Barentsz, N. Karssemeijer and H. Huisman. "Computer-aided detection of prostate cancer in MRI", IEEE Transactions on Medical Imaging 2014;33:1083-1092. Abstract/PDF DOI PMID 24770913

  30. S.E.A. Muenzing, B. van Ginneken, M.A. Viergever and J.P.W. Pluim. "DIRBoost-An algorithm for boosting deformable image registration: Application to lung CT intra-subject registration", Medical Image Analysis 2014;18:449-459. Abstract/PDF DOI PMID 24556079

  31. J. Bozek, M. Kallenberg, M. Grgic and N. Karssemeijer. "Use of volumetric features for temporal comparison of mass lesions in full field digital mammograms", Medical Physics 2014;41:021902. Abstract/PDF DOI PMID 24506623

  32. S. Schalekamp, B. van Ginneken, E. Koedam, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Computer aided detection improves detection of pulmonary nodules in chest radiographs beyond the support by bone suppressed images", Radiology 2014;272:252-261. Abstract/PDF DOI PMID 24635675

  33. S. Schalekamp, B. van Ginneken, N. Karssemeijer and C.M. Schaefer-Prokop. "Chest radiography: new technological developments and their applications", Seminars in Respiratory and Critical Care Medicine 2014;35:3-16. Abstract/PDF DOI PMID 24481755

  34. A. Poncela and L. Gallardo-Estrella. "Command-based voice teleoperation of a mobile robot via a human-robot interface", Robotica 2014:1-18. PDF DOI

  35. B. Durmus, D. Heppe, H. Taal, R. Manniesing, H. Raat, A. Hofman, E. Steegers, R. Gaillard and V. Jaddoe. "Parental Smoking During Pregnancy and Total and Abdominal Fat Distribution in School-age Children: the Generation R Study", International Journal of Obesity 2014;38:966-972. Abstract/PDF DOI PMID 24448598

  36. G. Litjens, R. Toth, W. van de Ven, C. Hoeks, S. Kerkstra, B. van Ginneken, G. Vincent, G. Guillard, N. Birbeck, J. Zhang, R. Strand, F. Malmberg, Y. Ou, C. Davatzikos, M. Kirschner, F. Jung, J. Yuan, W. Qiu, Q. Gao, P.E. Edwards, B. Maan, F. van der Heijden, S. Ghose, J. Mitra, J. Dowling, D. Barratt, H. Huisman and A. Madabhushi. "Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge", Medical Image Analysis 2014;18:359-373. Abstract/PDF DOI PMID 24418598

  37. F. Ciompi, O. Pujol and P. Radeva. "ECOC-DRF: Discriminative Random Fields based on Error-Correcting Output Codes", Pattern Recognition 2014;47:2193-2204. Abstract/PDF DOI

  38. A. Gubern-Mérida, M. Kallenberg, B. Platel, R. Mann, R. Marti and N. Karssemeijer. "Volumetric breast density estimation from Full-Field Digital Mammograms: A validation study", PLoS One 2014;9:e85952. Abstract/PDF DOI PMID 24465808

  39. C. Jacobs, E.M. van Rikxoort, T. Twellmann, E.T. Scholten, P.A. de Jong, J.M. Kuhnigk, M. Oudkerk, H.J. de Koning, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Automatic Detection of Subsolid Pulmonary Nodules in Thoracic Computed Tomography Images", Medical Image Analysis 2014;18:374-384. Abstract/PDF DOI PMID 24434166

  40. S. Balocco, C. Gatta, F. Ciompi, A. Wahle, P. Radeva, S. Carlier, G. Unal, E. Sanidas, J. Mauri, X. Carillo, T. Kovarnik, C.-W. Wang, H.-C. Chen, T.P. Exarchos, D.I. Fotiadis, F. Destrempes, G. Cloutier, O. Pujol, M. Alberti, E.G. Mendizabal-Ruiz, M. Rivera, T. Aksoy, R.W. Downe and I.A. Kakadiaris. "Standardized evaluation methodology and reference database for evaluating IVUS image segmentation", Computerized Medical Imaging and Graphics 2014;38:70-90. Abstract/PDF DOI PMID 24012215

  41. F.A.A. Mohamed Hoesein, M. Schmidt, O.M. Mets, H.A. Gietema, J.-W.J. Lammers, P. Zanen, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, I. Išgum, M. Prokop, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Discriminating dominant computed tomography phenotypes in smokers without or with mild COPD", Respiratory Medicine 2014;108:136-143. Abstract/PDF DOI PMID 24035313

  42. P. Ciet, P. Wielopolski, R. Manniesing, S. Lever, M. De Bruijne, G. Morana, P. Muzzio, M. Lequin and H. Tiddens. "Spirometer-controlled Cine-Magnetic Resonance Imaging for Diagnosis of Tracheobronchomalacia in Pediatric Patients", European Respiratory Journal 2014;43:115-124. Abstract/PDF DOI PMID 23598953

  43. Y. de Jong, J.H.F.M. Pinckaers, R.M. ten Brinck, A.A. Lycklama a Nijeholt and O.M. Dekkers. "Urinating standing versus sitting: position is of influence in men with prostate enlargement. A systematic review and meta-analysis", PLoS One 2014;9(7):e101320. DOI

  44. Y. de Jong, J.H.F.M. Pinckaers, R.M. ten Brinck and A.A.B. Lycklama a Nijeholt. "Invloed van mictiehouding op urodynamische parameters bij mannen: een literatuuronderzoek", Tijdschrift voor Urologie 2014;4(1):36-42. Abstract DOI

  45. R. Rissmann, J.H.F.M. Pinckaers, A.J.M. de Man, A.C. Cohen and E.A. Dubois. "Pharmacology E-learning 2.0 - Web vs. App", British Journal of Clinical Pharmacology 2014;78(4):772. DOI


Papers in conference proceedings

  1. Y. Diez, A. Gubern-Mérida, L. Wang, S. Diekmann, J. Martí, B. Platel, J. Kramme and R. Martí. "Comparison of Methods for Current-to-Prior Registration of Breast DCE-MRI", in: IWDM '14: Proceedings of the 12th international workshop on Digital Mammography, volume 8539, 2014, pages 689-695. PDF DOI

  2. Q. Mahmood, A. Chodorowski, B. Ehteshami Bejnordi and M. Persson. "A fully automatic unsupervised segmentation framework for the brain tissues in MR images", in: Medical Imaging of Proceedings of the SPIE, 2014. Abstract/PDF DOI

  3. K. Holland, M. Kallenberg, R. Mann, C. van Gils and N. Karssemeijer. "Stability of Volumetric Tissue Composition Measured in Serial Screening Mammograms", in: Breast Imaging -12th International Workshop, IWDM 2014, Gifu City, Japan, June 29 – July 2, 2014. Proceedings, volume 8539 of Lecture Notes in Computer Science, 2014. PDF DOI

  4. S.P. Rabbani, P. Maduskar, R.H.H.M. Philipsen, L. Hogeweg and B. van Ginneken. "Effect of image variation on computer aided detection systems", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, pages 90352H-1-90352H-8. Abstract/PDF DOI

  5. J.-J. Mordang, J. Hauth, G. den Heeten and N. Karssemeijer. "Automated Labeling of Screening Mammograms with Arterial Calcifications", in: Breast Imaging, volume 8539 of Lecture Notes in Computer Science, 2014. PDF DOI

  6. J. Melendez, C.I. Sánchez, R.H.H.M. Philipsen, P. Maduskar and B. van Ginneken. "Multiple-instance learning for computer-aided detection of tuberculosis", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 90351J. Abstract/PDF DOI

  7. B. Ehteshami Bejnordi, N. Timofeeva, I. Otte-Höller, N. Karssemeijer and J. van der Laak. "Quantitative analysis of stain variability in histology slides and an algorithm for standardization", in: Medical Imaging of Proceedings of the SPIE, 2014. Abstract/PDF DOI

  8. G. Litjens, R. Elliott, N. Shih, M. Feldman, J. Barentsz, C. Hulsbergen van de Kaa, I. Kovacs, H. Huisman and A. Madabhushi. "Distinguishing prostate cancer from benign confounders via a cascaded classifier on multi-parametric MRI", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 903512. PDF DOI

  9. G. Litjens, H. Huisman, R. Elliott, N. Shih, M. Feldman, Fütterer, J. Bomers and A. Madabhushi. "Distinguishing benign confounding treatment changes from residual prostate cancer on MRI following laser ablation", in: Medical Imaging, volume 9036 of Proceedings of the SPIE, 2014, page 90361D. PDF DOI

  10. C. Jacobs, S.H.T. Opdam, E.M. van Rikxoort, O.M. Mets, J. Rooyackers, P.A. de Jong, M. Prokop and B. van Ginneken. "Automated detection and quantification of micronodules in thoracic CT scans to identify subjects at risk for silicosis", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 90351I. Abstract/PDF DOI


Abstracts

  1. L. Gallardo-Estrella, E. Pompe, F.A. Mohamed Hoesein, P. De Jong, B. van Ginneken, E.M. van Rikxoort, H. de Koning, M. Oudkerk and J. Lammers. "Relationship between Lung Function Parameters and CT Measurements of Emphysema, Airways, and Tracheal Collapse in Subjects with Mild COPD", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  2. A.A.A. Setio, J. Gelderblom, C. Jacobs and B. van Ginneken. "Automatic Detection of Large Pulmonary Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  3. M.T.H. Oei, Manniesing, W.-J. van der Woude. Rieneke and van den Boom, B. van Ginneken, F.J.A. Meijer and M. Prokop. "One-Step-Stroke CT Imaging - Part I: Optimization of Interleaved Acquisition of Cerebral CT Perfusion and Neck CT Angiography", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  4. R. Philipsen, P. Maduskar, L. Hogeweg, J. Melendez, C.I. Sánchez and B. van Ginneken. "Robust Computer-Aided Detection of Tuberculosis in Chest Radiographs Using Energy Normalization", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  5. F. Ciompi, B. de Hoop, C. Jacobs, M. Prokop, P. a de Jong and B. van Ginneken. "Automatic Classification of Perifissural Pulmonary Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract/PDF

  6. B. van Ginneken, C. Jacobs, E.T. Scholten, M. Prokop and P.A. de Jong. "Feasibility of Rapid Reading of CT Lung Cancer Screening with Computer-Aided Detection Support", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  7. A. Khan, A. Zaidi, R. Philipsen, S. Khowaja, B. van Ginneken, A. Khan and T. Dossul. "Detection of Chest X-ray abnormalities and tuberculosis using computer-aided detection vs interpretation by radiologists and a clinical officer", in: 45th World Conference on Lung Health, 2014. Abstract

  8. B.C. Lassen, J. Kuhnigk, C. Jacobs, E.M. van Rikxoort and B. van Ginneken. "Fully Automatic Volumetric Segmentation of Pulmonary Nodules: Evaluation using the Complete LIDC/IDRI Database", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  9. M. Schmidt, E.M.V. Rikxoort, J. Kuhnigk, P.F. Judy and B. van Ginneken. "Subvoxel Accurate Airway Wall Measurements using an Intensity Integration Approach: Comparative Study using the COPDGene Phantom", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  10. A. Steiner, F. Mhimbira, J. van den Hombergh, P. Clowes, C. Mangu, B. van Ginneken, M. Hoelscher and K. Reither. "Computer-aided diagnosis of X-rays in a screening for pulmonary tuberculosis of a prison population in Tanzania", in: 45th World Conference on Lung Health, 2014. Abstract

  11. A. Zaidi, N. Khalid, R. Philipsen, B. van Ginneken, S. Khowaja and A. Khan. "Symptomatic screening and computer-aided radiography for active-case finding of tuberculosis: a prediction model for TB case detection", in: 45th World Conference on Lung Health, 2014. Abstract

  12. S. Schalekamp, I. van den Berk, I. Hartmann, M. Snoeren, A. Odink, S. Pegge, L. Schijf, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppressed images improve pulmonary fungal infection detection in chest radiographs", in: European Congress of Radiology, 2014. Abstract

  13. S. Schalekamp, N. Karssemeijer, C. Schaefer-Prokop and B. van Ginneken. "Double reading improves detection of small lung tumors in chest radiographs: can a computer aided detection system replace the second reader?", in: European Congress of Radiology, 2014. Abstract

  14. M.J.J.P. van Grinsven, G.H.S. Buitendijk, C. Brussee, B. van Ginneken, T. Theelen, C.C.W. Klaver and C.I. Sánchez. "Automatic detection of reticular drusen using multimodal retinal image analysis", in: Association for Research in Vision and Ophthalmology, 2014. Abstract

  15. M.T.H. Oei, R. Manniesing, F.J.A. Meijer and M. Prokop. "One-Step-Stroke Imaging: Does an Interleaved Acquisition of Cerebral CT Perfusion and CTA of the Carotids Affect CTP Values", in: European Congress of Radiology, 2014. Abstract

  16. W.J.M. van de Ven, S. Rinsma, N. Karssemeijer, J.O. Barentsz and H.J. Huisman. "Electro-magnetic tracker-based fusion for image-guided TRUS prostate biopsy", in: European Congress of Radiology, 2014. Abstract

  17. G. Litjens, N. Karssemeijer, J.O. Barentsz and H. Huisman. "Computer-aided Detection of Prostate Cancer in Multi-parametric Magnetic Resonance Imaging", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  18. E. Vos, T. Kobus, G. Litjens, T. Hambrock, C.H. van de Kaa, M. Maas and T. Scheenen. "Multiparametric MR imaging for the assessment of prostate cancer aggressiveness at 3 Tesla", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2014.


Theses

  1. E.T. Scholten. "SubSolid Nodules in lung cancer screening", PhD thesis, Universiteit Utrecht, 2014. Abstract URL

  2. S.E.A. Muenzing. "Learning-based approaches to deformable image registration", PhD thesis, Utrecht University, 2014. Abstract/PDF URL

  3. G. van Schie. "Image Computing Methods for Accurate and Efficient Interpretation of Digital Breast Tomosynthesis", PhD thesis, Radboud Universiteit Nijmegen, 2014. PDF URL

  4. T. Tan. "Automated 3D Breast Ultrasound Image Analysis", PhD thesis, Radboud Universiteit Nijmegen, 2014. PDF URL


2013

Papers in international journals

  1. N. Horeweg, C.M. van der Aalst, E. Thunnissen, K. Nackaerts, C. Weenink, H.J.M. Groen, J.-W.J. Lammers, J.G. Aerts, E.T. Scholten, J. van Rosmalen, W. Mali, M. Oudkerk and H.J. de Koning. "Characteristics of lung cancers detected by computer tomography screening in the randomized NELSON trial", American Journal of Respiratory and Critical Care Medicine 2013;187:848-854. Abstract/PDF DOI PMID 23348977

  2. E.K. Vos, G. Litjens, T. Kobus, T. Hambrock, C.A. Kaa, J.O. Barentsz, H. Huisman and T.W. Scheenen. "Assessment of Prostate Cancer Aggressiveness Using Dynamic Contrast-enhanced Magnetic Resonance Imaging at 3 T", European Urology 2013;64:448-455. PDF PMID 23751135

  3. S. Schalekamp, B. van Ginneken, L. Meiss, L. Peters-Bax, L.G.B.A. Quekel, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppressed images improve radiologists' detection performance for pulmonary nodules in chest radiographs", European Journal of Radiology 2013;82:2399-2405. Abstract/PDF DOI PMID 24113431

  4. A. Bria, N. Karssemeijer and F. Tortorella. "Learning from unbalanced data: A cascade-based approach for detecting clustered microcalcifications", Medical Image Analysis 2013;18:241-252. Abstract/PDF DOI PMID 24292553

  5. N. Horeweg, C.M. van der Aalst, R. Vliegenthart, Y. Zhao, X. Xie, E.T. Scholten, W. Mali, E. Thunnissen, C. Weenink, H.J.M. Groen, J.-W.J. Lammers, K. Nackaerts, J. van Rosmalen, M. Oudkerk and H.J. de Koning. "Volumetric computed tomography screening for lung cancer: three rounds of the NELSON trial", European Respiratory Journal 2013;42:1659-1667. Abstract/PDF DOI PMID 23845716

  6. E.T. Scholten, B. de Hoop, C. Jacobs, S. van Amelsvoort-van de Vorst, R.J. van Klaveren, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, W.T.M. Mali, H.A. Gietema, M. Prokop, B. van Ginneken and P.A. de Jong. "Semi-automatic quantification of subsolid pulmonary nodules: comparison with manual measurements", PLoS One 2013;8:e80249. Abstract/PDF DOI PMID 24278264

  7. T. Tan, B. Platel, T. Twellmann, G. van Schie, R. Mus, A. Grivegnée, R.M. Mann and N. Karssemeijer. "Evaluation of the Effect of Computer-Aided Classification of Benign and Malignant Lesions on Reader Performance in Automated Three-dimensional Breast Ultrasound", Academic Radiology 2013;20:1381-1388. Abstract/PDF DOI PMID 24119350

  8. G. van Schie, R. Mann, M. Imhof-Tas and N. Karssemeijer. "Generating synthetic mammograms from reconstructed tomosynthesis volumes", IEEE Transactions on Medical Imaging 2013;32:2322-2331. Abstract/PDF DOI PMID 24058019

  9. J. Huo, K. Okada, E.M. van Rikxoort, H.J. Kim, J.R. Alger, W.B. Pope, J.G. Goldin and M.S. Brown. "Ensemble segmentation for GBM brain tumors on MR images using confidence-based averaging", Medical Physics 2013;40:093502. Abstract/PDF DOI PMID 24007185

  10. P. Maduskar, M. Muyoyeta, H. Ayles, L. Hogeweg, L. Peters-Bax and B. van Ginneken. "Detection of tuberculosis with digital chest radiography: automatic reading versus interpretation by clinical officers", International Journal of Tuberculosis and Lung Disease 2013;17:1613-1620. Abstract/PDF DOI PMID 24200278

  11. W.J.M. van de Ven and J.O. Barentsz. "Prostate cancer: MRI/US-guided biopsy -- a viable alternative to TRUS-guidance", Nature Reviews Urology 2013;10:559-560. PDF DOI PMID 23938941

  12. L. Hogeweg, C.I. Sánchez and B. van Ginneken. "Suppression of translucent elongated structures: applications in chest radiography", IEEE Transactions on Medical Imaging 2013;32:2099-2113. Abstract/PDF DOI PMID 23880041

  13. O.M. Mets, R. Vliegenthart, M.J. Gondrie, M.A. Viergever, M. Oudkerk, H.J. de Koning, W.P.T.M. Mali, M. Prokop, R.J. van Klaveren, Y. van der Graaf, C.F.M. Buckens, P. Zanen, J.-W.J. Lammers, H.J.M. Groen, I. Išgum and P.A. de Jong. "Lung Cancer Screening CT-Based Prediction of Cardiovascular Events", JACC Cardiovasc Imaging 2013;6:899-907. Abstract/PDF DOI PMID 23769488

  14. E.T. Scholten, C. Jacobs, B. van Ginneken, M.J. Willemink, J.-M. Kuhnigk, P.M.A. van Ooijen, M. Oudkerk, W.P.T.M. Mali and P.A. de Jong. "Computer-Aided Segmentation and Volumetry of Artificial Ground-Glass Nodules at Chest CT", American Journal of Roentgenology 2013;201:295-300. Abstract/PDF DOI PMID 23883209

  15. H. Prosch and C. Schaefer-Prokop. "[Radiological evaluation of incidental pulmonary nodules]", Radiologe 2013;53:623-638. Abstract/PDF DOI PMID 23873184

  16. E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review", Physics in Medicine and Biology 2013;58:R187-R220. Abstract/PDF DOI PMID 23956328

  17. E.J. Smit, E.-J. Vonken, T. van Seeters, J.W. Dankbaar, I.C. van der Schaaf, L.J. Kappelle, B. van Ginneken, B.K. Velthuis and M. Prokop. "Timing-Invariant Imaging of Collateral Vessels in Acute Ischemic Stroke", Stroke 2013;44:2194-2199. Abstract/PDF DOI PMID 23760216

  18. A. Srikantha, M. Harz, L. Wang, B. Platel, R.M. Mann, H.K. Hahn and H.-O. Peitgen. "Symmetry-based detection of ductal carcinoma in situ in breast MRI", European Journal of Radiology 2013;81 Suppl 1:S158-S159. PDF DOI PMID 23083573

  19. O.M. Mets, M. Schmidt, C.F. Buckens, M.J. Gondrie, I. Išgum, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, M. Prokop, J.J. Lammers, P. Zanen, F.A.A. Mohamed Hoesein, W.P. Mali, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Diagnosis of chronic obstructive pulmonary disease in lung cancer screening Computed Tomography scans: independent contribution of emphysema, air trapping and bronchial wall thickening", Respiratory Research 2013;14:59. Abstract/PDF DOI PMID 23711184

  20. T. Tan, B. Platel, R. Mus, L. Tabar, R. Mann and N. Karssemeijer. "Computer-aided Detection of Cancer in Automated 3D Breast Ultrasound", IEEE Transactions on Medical Imaging 2013;32:1698-1706. Abstract/PDF DOI PMID 23693128

  21. L. Hogeweg, C.I. Sánchez, J. Melendez, P. Maduskar, A. Story, A. Hayward and B. van Ginneken. "Foreign object detection and removal to improve automated analysis of chest radiographs", Medical Physics 2013;40:071901. Abstract/PDF DOI PMID 23822438

  22. M.L. Giger, N. Karssemeijer and J.A. Schnabel. "Breast Image Analysis for Risk Assessment, Detection, Diagnosis, and Treatment of Cancer", Annual Review of Biomedical Engineering 2013;15:327-57. Abstract/PDF DOI PMID 23683087

  23. F.A.A. Mohamed Hoesein, P. Zanen, P.A. de Jong, B. van Ginneken, H.M. Boezen, H.J. Groen, M. Oudkerk, H.J. de Koning, D.S. Postma and J.-W.J. Lammers. "Rate of progression of CT-quantified emphysema in male current and ex-smokers: a follow-up study", Respiratory Research 2013;14:55. Abstract/PDF DOI PMID 23688060

  24. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Computed tomography structural lung changes in discordant airflow obstruction", PLoS One 2013;8:e65177. Abstract/PDF DOI PMID 23785411

  25. O.M. Mets, P.A. de Jong, B. van Ginneken, C.L.J.J. Kruitwagen, M. Prokop, M. Oudkerk, J.-W.J. Lammers and P. Zanen. "CT Air Trapping Is Independently Associated with Lung Function Reduction over Time", PLoS One 2013;8:e61783. Abstract/PDF DOI PMID 23613934

  26. E.T. Scholten, W.P.T.M. Mali, M. Prokop, B. van Ginneken, R. Glandorf, R. van Klaveren, M. Oudkerk and P.A. de Jong. "Non-solid lung nodules on low-dose computed tomography: comparison of detection rate between 3 visualization techniques", Cancer Imaging 2013;13:150-154. Abstract/PDF DOI PMID 23598304

  27. M.J.J.P. van Grinsven, Y.T.E. Lechanteur, J.P.H. van de Ven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic Drusen Quantification and Risk Assessment of Age-related Macular Degeneration on Color Fundus Images", Investigative Ophthalmology and Visual Science 2013;54(4):3019-3027. Abstract/PDF DOI PMID 23572106

  28. G. van Schie, M.G. Wallis, K. Leifland, M. Danielsson and N. Karssemeijer. "Mass detection in reconstructed digital breast tomosynthesis volumes with a computer-aided detection system trained on 2D mammograms", Medical Physics 2013;40:041902. Abstract/PDF DOI PMID 23556896

  29. N. Fens, A.G.J. van Rossum, P. Zanen, B. van Ginneken, R.J. van Klaveren, A.H. Zwinderman and P.J. Sterk. "Subphenotypes of Mild-to-Moderate COPD by Factor and Cluster Analysis of Pulmonary Function, CT Imaging and Breathomics in a Population-Based Survey", COPD 2013;10:277-285. Abstract/PDF DOI PMID 23536961

  30. R. Hameeteman, S. Rozie, C. Metz, R. Manniesing, T. van Walsum, A. van der Lugt, W. Niessen and S. Klein. "Automated Carotid Artery Distensibility Measurements from CTA using Nonrigid Registration", Medical Image Analysis 2013;17:515-24. Abstract/PDF DOI PMID 23602917

  31. M. Velikova, P.J.F. Lucas, M. Samulski and N. Karssemeijer. "On the interplay of machine learning and background knowledge in image interpretation by Bayesian Networks", Artificial Intelligence in Medicine 2013;57:73–86. Abstract/PDF DOI PMID 23395008

  32. D.P. Naidich, A.A. Bankier, H. MacMahon, C.M. Schaefer-Prokop, M. Pistolesi, J.M. Goo, P. Macchiarini, J.D. Crapo, C.J. Herold, J.H. Austin and W.D. Travis. "Recommendations for the management of subsolid pulmonary nodules detected at CT: a statement from the Fleischner Society", Radiology 2013;266:304-317. Abstract/PDF DOI PMID 23070270

  33. A.E. Dijkstra, D.S. Postma, N. Ten Hacken, J.M. Vonk, M. Oudkerk, P.M. van Ooijen, P. Zanen, F.A.A. Mohamed Hoesein, B. van Ginneken, M. Schmidt and H.J. Groen. "Low-dose CT measurements of airway dimensions and emphysema associated with airflow limitation in heavy smokers: a cross sectional study", Respiratory Research 2013;14:1-9. Abstract/PDF DOI PMID 23356533

  34. H. Prosch, C.M. Schaefer-Prokop, E. Eisenhuber, D. Kienzl and C.J. Herold. "CT protocols in interstitial lung diseases-A survey among members of the European Society of Thoracic Imaging and a review of the literature", European Radiology 2013;33:1553-1563. Abstract/PDF DOI PMID 23239063

  35. T. Tan, B. Platel, R.M. Mann, H. Huisman and N. Karssemeijer. "Chest Wall Segmentation in Automated 3D Breast Ultrasound Scans", Medical Image Analysis 2013;17:1273–1281. Abstract/PDF DOI PMID 23273891

  36. T. Hambrock, P.C. Vos, C.A. Hulsbergen-van de Kaa, J.O. Barentsz and H.J. Huisman. "Prostate Cancer: Computer-aided Diagnosis with Multiparametric 3-T MR Imaging--Effect on Observer Performance", Radiology 2013;266:521-530. Abstract/PDF DOI PMID 23204542

  37. W.J.M. van de Ven, C.A. Hulsbergen-van de Kaa, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Simulated required accuracy of image registration tools for targeting high-grade cancer components with prostate biopsies", European Radiology 2013;23:1401-1407. Abstract/PDF DOI PMID 23138386

  38. R. Hupse, M. Samulski, M.B. Lobbes, R.M. Mann, R. Mus, G.J. den Heeten, D. Beijerinck, R.M. Pijnappel, C. Boetes and N. Karssemeijer. "Computer-aided Detection of Masses at Mammography: Interactive Decision Support versus Prompts", Radiology 2013;266:123-129. Abstract/PDF DOI PMID 23091171

  39. B. Lassen, E.M. van Rikxoort, M. Schmidt, S. Kerkstra, B. van Ginneken and J. Kuhnigk. "Automatic segmentation of the pulmonary lobes from chest CT scans based on fissures, vessels, and bronchi", IEEE Transactions on Medical Imaging 2013;32:210-222. Abstract/PDF DOI PMID 23014712

  40. R. Hupse, M. Samulski, M. Lobbes, A. den Heeten, M.W. Imhof-Tas, D. Beijerinck, R. Pijnappel, C. Boetes and N. Karssemeijer. "Standalone computer-aided detection compared to radiologists' performance for the detection of mammographic masses", European Radiology 2013;23:93-100. Abstract/PDF DOI PMID 22772149

  41. A. Firouzian, R. Manniesing, C.T. Metz, R. Risselada, S. Klein, F. van Kooten, M.C.J.M. Sturkenboom, A. van der Lugt and W.J. Niessen. "Quantification of Intracranial Aneurysm Morphodynamics from ECG-gated CT Angiography", Academic Radiology 2013;20:52-58. Abstract/PDF DOI PMID 22884403

  42. R. Brecheisen, B. Platel, B.M. ter Haar Romeny and A. Vilanova. "Illustrative uncertainty visualization of DTI fiber pathways", Visual Computer 2013;29:297-309. Abstract/PDF DOI


Papers in conference proceedings

  1. J. Charbonnier, E.J. Smit, M.A. Viergever, B.K. Velthuis and P.C. Vos. "Computer-aided diagnosis of acute ischemic stroke based on cerebral hypoperfusion using 4D CT angiography", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013. Abstract

  2. M. Ghafoorian, N. Taghizadeh and H. Beigy. "Automatic Abstraction in Reinforcement Learning Using Ant System Algorithm", in: AAAI Spring Symposium: Lifelong Machine Learning, 2013. Abstract

  3. M. Peemen, A.A.A. Setio, B. Mesman and H. Corporaal. "Memory-centric accelerator design for Convolutional Neural Networks", in: Computer Design (ICCD), 2013 IEEE 31st International Conference on, 2013, pages 13-19. PDF DOI

  4. B. Ehteshami Bejnordi, R. Moshavegh, K. Sujathan, P. Malm, E. Bengtsson and A. Mehnert. "Novel chromatin texture features for the classification of pap smears", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  5. A.A.A. Setio, F. van der Sommen, S. Zinger, E.J. Schoon and P.H.N. de With. "Evaluation and Comparison of Textural Feature Representation for the Detection of Early Stage Cancer in Endoscopy", in: Proc. VISAPP, 2013, pages 238-243. Abstract/PDF

  6. F. Ciompi, S. Balocco, C. Caus, J. Mauri and P. Radeva. "Stent Shape Estimation through a Comprehensive Interpretation of Intravascular Ultrasound Images", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2013, pages 345-352. Abstract/PDF

  7. I. Fondon, M.J.J.P. van Grinsven, C.I. Sánchez and A. Saez. "Perceptually adapted method for optic disc detection on retinal fundus images", in: Computer-Based Medical Systems (CBMS), 2013 IEEE 26th International Symposium on, 2013, pages 279-284. PDF DOI

  8. A. Gubern-Mérida, B. Platel, R. Martí and N. Karssemeijer. "Automated localization of malignant lesions in breast DCE-MRI", in: MICCAI Workshop: Breast Image Analysis, 2013. Abstract/PDF

  9. F. Ciompi, R. Hua, S. Balocco, M. Alberti, O. Pujol, C. Caus, J. Mauri and P. Radeva. "Learning to Detect Stent Struts in Intravascular Ultrasound", in: Pattern Recognition and Image Analysis, 2013, pages 575-583. Abstract/PDF URL

  10. J. Ramos, T. Kockelkorn, B. van Ginneken, M.A. Viergever, J. Grutters, R. Ramos and A. Campilho. "Learning Interstitial Lung Diseases CT Patterns from Reports Keywords", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013, pages 21-32. Abstract/PDF

  11. J. Schwaab, Y. Diez, J. Martí, R. Martí, J. van Zelst, B. Platel, T. Tan, J. Gregori, S. Wirtz, J. Kramme and M. Günther. "Image Quality in automated breast ultrasound images: a preliminary study for the development of automated image quality assessment", in: MICCAI Workshop: Breast Image Analysis, 2013. PDF

  12. T. Tan, B. Eiben, B. Platel, J. Zelst, L. Han, T. Mertzanidou, S. Johnsen, J. Hipwell, R. Mann, D. Hawkes and N. Karssemeijer. "Registration of automated 3D breast ultrasound views", in: MICCAI Workshop: Breast Image Analysis, 2013. PDF

  13. B. van Ginneken, R.H.H.M. Philipsen, L. Hogeweg, P. Maduskar, J.C. Melendez, C.I. Sánchez, R. Maane, B. dei Alorse, U. d'Alessandro and I.M.O. Adetifa. "Automated Scoring of Chest Radiographs for Tuberculosis Prevalence Surveys: A Combined Approach", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013, pages 9-19. Abstract/PDF

  14. P. Lo, E.M. van Rikxoort, J. Goldin and M.S. Brown. "Semi-automated segmentation of pulmonary lobes in chest CT scans using evolving surfaces", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013. Abstract/PDF

  15. A. Srikantha, M.T. Harz, G. Newstead, L. Wang, B. Platel, K. Hegenscheid, R.M. Mann, H.K. Hahn and H.-O. Peitgen. "Symmetry-based detection and diagnosis of DCIS in breast MRI", in: Medical Imaging of Proceedings of the SPIE, 2013, pages 86701E-86701E-8. Abstract/PDF DOI

  16. M.J.J.P. van Grinsven, A. Chakravarty, J. Sivaswamy, T. Theelen, B. van Ginneken and C.I. Sánchez. "A bag of words approach for discriminating between retinal images containing exudates or drusen", in: IEEE International Symposium on Biomedical Imaging, 2013, pages 1444-1447. Abstract/PDF DOI

  17. M.M. Riad, B. Platel, F.-E. de Leeuw and N. Karssemeijer. "Detection of white matter lesions in cerebral small vessel disease", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013. Abstract DOI

  18. R. Philipsen, P. Maduskar, L. Hogeweg and B. van Ginneken. "Normalization of Chest Radiographs", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700G. Abstract/PDF DOI

  19. A. van der Avoird, N. Lin, B. van Ginneken and R. Manniesing. "A Hardware Implementation of a Levelset Algorithm for Carotid Lumen Segmentation in CTA", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  20. H.O.A. Laue, M.T.H. Oei, L. Chen, I. Kompan, H.K. Hahn, M. Prokop and R. Manniesing. "Automated Artery and Vein Detection in Dynamic CT data with an Unsupervised Classification Algorithm of the Time Intensity Curves", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  21. P. Maduskar, L. Hogeweg, R. Philipsen and B. van Ginneken. "Automated localization of costophrenic recesses and costophrenic angle measurement on frontal chest radiographs", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 867038. Abstract/PDF DOI

  22. J.J. Mordang, M.T.H. Oei, R. van den Boom, E.J. Smit, M. Prokop, B. van Ginneken and R. Manniesing. "A Pattern Recognition Framework for Vessel Segmentation in 4D CT of the Brain", in: Medical Imaging of Proceedings of the SPIE, 2013, page 866919. Abstract/PDF DOI

  23. T. Tan, B. Platel, M. Hicks, R.M. Mann and Nico Karssemeijer. "Finding Lesion Correspondences in Different Views of Automated 3D Breast Ultrasound", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  24. M.J.J.P. van Grinsven, Y.T.E. Lechanteur, J.P.H. van de Ven, B. van Ginneken, T. Theelen and C.I. Sánchez. "Automatic Age-related macular degeneration detection and staging", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700M. Abstract/PDF DOI

  25. P. Maduskar, L. Hogeweg, R. Philipsen, S. Schalekamp and B. van Ginneken. "Improved texture analysis for automatic detection of Tuberculosis (TB) on Chest Radiographs with Bone Suppression images", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700H. Abstract/PDF DOI

  26. S. Schalekamp, B. van Ginneken, C. Schaefer-Prokop and N. Karssemeijer. "Impact of Bone Suppression Imaging on the Detection of Lung Nodules in Chest Radiographs: Analysis of Multiple Reading Sessions", in: Medical Imaging of Proceedings of the SPIE, 2013, page 86730Y. Abstract/PDF DOI

  27. A. Gubern-Mérida, L. Wang, M. Kallenberg, R. Martí, H. Hahn and N. Karssemeijer. "Breast segmentation in MRI: quantitative evaluation of three methods", in: Medical Imaging of Proceedings of the SPIE, 2013, pages 86693G-86693G-7. Abstract/PDF DOI

  28. W.J.M. van de Ven, Y. Hu, J.O. Barentsz, N. Karssemeijer, D. Barratt and H.J. Huisman. "Surface-based prostate registration with biomechanical regularization", in: Medical Imaging, volume 8671 of Proceedings of the SPIE, 2013, page 86711R. Abstract/PDF DOI

  29. L. Gallardo-Estrella, B. van Ginneken and E.M. van Rikxoort. "Normalization of CT scans reconstructed with different kernels to reduce variability in emphysema measurements", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700E. Abstract/PDF DOI

  30. P. Lo, E.M. van Rikxoort, F. Abtin, S. Ahmad, A. Ordookhani, J.G. Goldin and M.S. Brown. "Automated segmentation of pulmonary lobes in chest CT scans using evolving surfaces", in: Medical Imaging, volume 8869 of Proceedings of the SPIE, 2013, page 86693R. Abstract/PDF DOI


Abstracts

  1. M. Brink, E.M. van Rikxoort, J. Charbonnier, S.J. van Riel, C.M. Schaefer-Prokop and M. Prokop. "Iodine Mapping of the Lung Using Subtraction Imaging for Pulmonary Embolism: Technique and Initial Clinical Experience", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  2. S. Schalekamp, B. van Ginneken, M. Brink, B. Heggelman, M. Spee, I. Somers, N. Karssemeijer and C. Schaefer-Prokop. ""Computer Aided Detection shows added value to Bone Suppression Imaging for the detection of lung nodules in chest radiographs"", in: WCTI, 2013. Abstract

  3. S. Schalekamp, B. van Ginneken, C. Schaefer-Prokop and N. Karssemeijer. ""Computer aided detection of lung nodules in chest radiographs: novel approaches to improve reader performance"", in: MIPS, 2013. Abstract

  4. S. Schalekamp, N. Karssemeijer, C. Schaefer-Prokop and B. van Ginneken. ""Independent combination of multiple readers for the detection of lung nodules in chest radiographs: setting a benchmark for computer-aided detection"", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  5. W.J.M. van de Ven, N. Karssemeijer, J.O. Barentsz and H.J. Huisman. "Image registration for prostate MR guided biopsy using automated biomechanical modeling", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  6. G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Initial prospective evaluation of the prostate imaging reporting and data standard (PI-RADS): Can it reduce unnecessary MR guided biopsies?", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  7. B. van Ginneken, E.M. van Rikxoort, S.J. Lafebre, C. Jacobs, M. Schmidt, J.-M. Kuhnigk, M. Prokop, C.M. Schaefer-Prokop, J. Charbonnier, L. Hogeweg, P. Maduskar, L. Gallardo-Estrella, R. Philipsen and B. Lassen. "CIRRUS Lung: an optimized workflow for quantitative image analysis of thoracic computed tomography and chest radiography for major pulmonary diseases: chronic obstructive pulmonary disease, lung cancer and tuberculosis", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  8. C. Jacobs, B. van Ginneken, S. Fromme, M. Prokop and E.M. van Rikxoort. "Benchmarking computer-aided detection of pulmonary nodules on the recently completed publicly available LIDC/IDRI database", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  9. S.J. van Riel, E.M. van Rikxoort, C. Jacobs, S. Schalekamp, M. Prokop, B. van Ginneken, P.A. de Jong, E.T. Scholten, H.A. Gietema and C.M. Schaefer-Prokop. "Intra- and inter-reader variability of pulmonary nodule classification according to the Fleischner guidelines: clinical consequences", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  10. S.J. van Riel, C.M. Schaefer-Prokop, E.M. van Rikxoort, B. van Ginneken, M. Prokop, S. Schalekamp, C. Jacobs, P.A. de Jong, H.A. Gietema and E.T. Scholten. "Impact of section thickness on classification of pulmonary nodules into solid, part-solid, and non-solid: an observer study", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  11. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J.-M. Kuhnigk, M. Oudkerk, H. de Koning and B. van Ginneken. "Reproducibility of automated three-dimensional airway wall thickness measurements in thoracic computed tomography and influence of inspiration depth", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  12. J. van Zelst, T. Tan, B. Platel, N. Karssemeijer and R. Mann. "Evaluation of spiculation and retraction patterns in coronal reconstructions in 3D Automated Breast Ultrasound (ABUS) improve differentiation between benign and malignant breast lesions", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  13. M.M. Teussink, M.J.J.P. van Grinsven, B. Cense, C.B. Hoyng, J. Klevering and T. Theelen. "Functional optical coherence tomography with a commercial device - a pilot study", in: Association for Research in Vision and Ophthalmology, 2013. Abstract

  14. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Automated characterization of pulmonary nodules in thoracic CT images using a segmentation-based classification system", in: European Congress of Radiology, 2013. Abstract

  15. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Non-solid, part-solid or solid? Classification of pulmonary nodules in thoracic CT by radiologists and a computer-aided diagnosis system", in: European Congress of Radiology, 2013. Abstract

  16. P. Maduskar, L. Hogeweg, H. Ayles and B. van Ginneken. "Performance evaluation of automatic chest radiograph reading for detection of tuberculosis (TB): a comparative study with clinical officers and certified readers on TB suspects in sub-Saharan Africa", in: European Congress of Radiology, 2013. Abstract

  17. M.T.H. Oei, R. van den Boom, L.J. Oostveen, H.O.A. Laue, B. van Ginneken, R. Manniesing and M. Prokop. "Influence of Temporal Sampling Rate of CTP acquisitions on Cerebral Perfusion Maps using a Digital Phantom", in: European Congress of Radiology, 2013. Abstract

  18. R. van den Boom, M. Oei, L. Oostveen, H. Laue, B. van Ginneken, R. Manniesing and M. Prokop. "Effect of dose reduction on cerebral CT perfusion maps: results from a hybrid digital perfusion phantom", in: European Congress of Radiology, 2013. Abstract

  19. J. van Zelst, R. Mus, T. Tan, N. Karssemeijer and R. Mann. "Feasibility of automated 3D breast ultrasound scanning in screening of women with high risk", in: European Congress of Radiology, 2013. Abstract

  20. M.C. Maas, M.J. Koopman, G.J. Litjens, A.J. Wright, K.M. Selnas, I.S. Gribbestad, M.A. Haider, K.J. Macura, D.J. Margolis, B. Kiefer, J.J. Fütterer and T.W. Scheenen. "Prostate Cancer localization with a Multiparametric MR Approach (PCaMAP): initial results of a multi-center study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2013. PDF


Theses

  1. L.E. Hogeweg. "Automatic detection of tuberculosis in chest radiographs", PhD thesis, Radboud Universiteit Nijmegen, 2013. Abstract/PDF URL

  2. A. Firouzian. "Automated Analysis of Intracranial Aneurysm Morphology and Dynamics from CTA Data", PhD thesis, Erasmus University Rotterdam, 2013. Abstract/PDF URL


Other publications

  1. R. Beichel, M. de Bruijne, S. Kabus, A.P. Kiraly, J.M. Kuhnigk, J. McClelland, T. Kitasaka, E.M. van Rikxoort and S. Rit. "The Fifth International Workshop on Pulmonary Image Analysis", 2013. Abstract/PDF URL


2012

Papers in international journals

  1. M. Alberti, S. Balocco, C. Gatta, F. Ciompi, O. Pujol, J. Silva, X. Carrillo and P. Radeva. "Automatic bifurcation detection in coronary IVUS sequences", IEEE Transactions on Biomedical Engineering 2012;59:1022-1031. Abstract/PDF DOI PMID 22231146

  2. F. Ciompi, O. Pujol, C. Gatta, M. Alberti, S. Balocco, X. Carrillo, J. Mauri-Ferre and P. Radeva. "HoliMAb: A holistic approach for Media--Adventitia border detection in intravascular ultrasound", Medical Image Analysis 2012. Abstract/PDF URL

  3. H.J.M. Meijer, O.A. Debats, M. Roach, 3rd, P.N. Span, J.A. Witjes, J.H.A.M. Kaanders, E.N.J.T. van Lin and J.O. Barentsz. "Magnetic Resonance Lymphography Findings in Patients With Biochemical Recurrence After Prostatectomy and the Relation With the Stephenson Nomogram", International Journal of Radiation Oncology, Biology, Physics 2012;84:1186-1191. Abstract/PDF DOI PMID 22520482

  4. P.M. Boiselle, L.R. Goodman, D. Litmanovich, M. Rémy-Jardin and C. Schaefer-Prokop. "Expert opinion: CT pulmonary angiography in pregnant patients with suspected pulmonary embolism", Journal of Thoracic Imaging 2012;27:5. PDF DOI PMID 22189243

  5. D.W. De Boo, F. van Hoorn, J. van Schuppen, L. Schijf, M.J. Scheerder, N.J. Freling, O. Mets, M. Weber and C.M. Schaefer-Prokop. "Observer training for computer-aided detection of pulmonary nodules in chest radiography", European Radiology 2012;22:1659-1664. Abstract/PDF DOI PMID 22447377

  6. E. Eisenhuber, C.M. Schaefer-Prokop, H. Prosch and W. Schima. "Bedside chest radiography", Respiratory Care 2012;57:427-443. Abstract/PDF DOI PMID 22391269

  7. O.M. Mets, P. Zanen, J.-W.J. Lammers, I. Išgum, H.A. Gietema, B. van Ginneken, M. Prokop and P.A. de Jong. "Early Identification of Small Airways Disease on Lung Cancer Screening CT: Comparison of Current Air Trapping Measures", Lung 2012;190:629-633. Abstract/PDF DOI PMID 23064488

  8. A.M.J. Bluekens, R. Holland, N. Karssemeijer, M.J.M. Broeders and G.J. den Heeten. "Comparison of Digital Screening Mammography and Screen-Film Mammography in the Early Detection of Clinically Relevant Cancers: A Multicenter Study", Radiology 2012;265:707-714. Abstract/PDF DOI PMID 23033499

  9. I. Išgum, M. Prokop, M. Niemeijer, M. Viergever and B. van Ginneken. "Automatic coronary calcium scoring in low-dose chest computed tomography", IEEE Transactions on Medical Imaging 2012;31:2322 - 2334. Abstract/PDF DOI PMID 22961297

  10. B. de Hoop, B. van Ginneken, H. Gietema and M. Prokop. "Pulmonary Perifissural Nodules on CT Scans: Rapid Growth Is Not a Predictor of Malignancy", Radiology 2012;265:611-616. Abstract/PDF DOI PMID 22929331

  11. J.M. Lesniak, R. Hupse, R. Blanc, N. Karssemeijer and G. Székely. "Comparative evaluation of support vector machine classification for computer aided detection of breast masses in mammography", Physics in Medicine and Biology 2012;57:5295-5307. Abstract/PDF DOI PMID 22853938

  12. G. Litjens, T. Hambrock, C. Hulsbergen-van de Kaa, J. Barentsz and H. Huisman. "Interpatient Variation in Normal Peripheral Zone Apparent Diffusion Coefficient: Effect on the Prediction of Prostate Cancer Aggressiveness", Radiology 2012;265:260-266. Abstract/PDF DOI PMID 22923722

  13. S.E.A. Muenzing, B. van Ginneken, K. Murphy and J.P.W. Pluim. "Supervised Quality Assessment Of Medical Image Registration: Application to intra-patient CT lung registration", Medical Image Analysis 2012;16:1521-1531. Abstract/PDF DOI PMID 22981428

  14. M. Kallenberg, C. van Gils, M. Lokate, G. den Heeten and N. Karssemeijer. "Effect of compression paddle tilt correction on volumetric breast density estimation", Physics in Medicine and Biology 2012;57:5155-5168. Abstract/PDF DOI PMID 22842727

  15. T. Kobus, P.C. Vos, T. Hambrock, M. De Rooij, C.A. Hulsbergen-Van de Kaa, J.O. Barentsz, A. Heerschap and T.W.J. Scheenen. "Prostate Cancer Aggressiveness: In Vivo Assessment of MR Spectroscopy and Diffusion-weighted Imaging at 3 T", Radiology 2012;265:457-467. Abstract/PDF DOI PMID 22843767

  16. O.M. Mets, R.A. van Hulst, C. Jacobs, B. van Ginneken and P.A. de Jong. "Normal Range of Emphysema and Air Trapping on CT in Young Men", American Journal of Roentgenology 2012;199:336-340. Abstract/PDF DOI PMID 22826394

  17. E.J. Smit, E.-J. Vonken, I.C. van der Schaaf, A. Mendrik, J.W. Dankbaar, A.D. Horsch, T. van Seeters, B. van Ginneken and M. Prokop. "Timing-Invariant Reconstruction for Deriving High-quality CT Angiographic Data from Cerebral CT Perfusion Data", Radiology 2012;263:216-225. Abstract/PDF DOI PMID 22332063

  18. P. Lo, B. van Ginneken, J.M. Reinhardt, Y. Tarunashree, P.A. de Jong, B. Irving, C. Fetita, M. Ortner, R. Pinho, J. Sijbers, M. Feuerstein, A. Fabijanska, C. Bauer, R. Beichel, C.S. Mendoza, R. Wiemker, J. Lee, A.P. Reeves, S. Born, O. Weinheimer, E.M. van Rikxoort, J. Tschirren, K. Mori, B. Odry, D.P. Naidich, I.J. Hartmann, E.A. Hoffman, M. Prokop, J.H. Pedersen and M. de Bruijne. "Extraction of Airways from CT (EXACT'09)", IEEE Transactions on Medical Imaging 2012;31:2093-2107. Abstract/PDF DOI PMID 22855226

  19. M.J. Stoutjesdijk, M. Zijp, C. Boetes, N. Karssemeijer, J.O. Barentsz and H. Huisman. "Computer aided analysis of breast MRI enhancement kinetics using mean shift c lustering and multifeature iterative region of interest selection", Journal of Magnetic Resonance Imaging 2012;36:1104-1112. Abstract/PDF DOI PMID 22786883

  20. E.J.L. Brunenberg, P. Moeskops, W.H. Backes, C. Pollo, L. Cammoun, A. Vilanova, M.L.F. Janssen, V.E.R.M. Visser-Vandewalle, B.M. Ter Haar Romeny, J.-P. Thiran and B. Platel. "Structural and Resting State Functional Connectivity of the Subthalamic Nucleus: Identification of Motor STN Parts and the Hyperdirect Pathway", PLoS One 2012;7:e39061. Abstract/PDF DOI PMID 22768059

  21. M.O. Leach, B. Morgan, P.S. Tofts, D.L. Buckley, W. Huang, M.A. Horsfield, T.L. Chenevert, D.J. Collins, A. Jackson, D. Lomas, B. Whitcher, L. Clarke, R. Plummer, I. Judson, R. Jones, R. Alonzi, T. Brunner, D.M. Koh, P. Murphy, J.C. Waterton, G. Parker, M.J. Graves, T.W.J. Scheenen, T.W. Redpath, M. Orton, G. Karczmar, H. Huisman, J. Barentsz, A. Padhani and o. b. o. t.E.C.M.C.I.N.S.C. . "Imaging vascular function for early stage clinical trials using dynamic contrast-enhanced magnetic resonance imaging", European Radiology 2012;22:1451-1464. Abstract/PDF PMID 22562143

  22. T. Mertzanidou, J. Hipwell, M.J. Cardoso, X. Zhang, C. Tanner, S. Ourselin, U. Bick, H. Huisman, N. Karssemeijer and D. Hawkes. "MRI to X-ray mammography registration using a volume-preserving affine transformation", Medical Image Analysis 2012;16:966-975. Abstract/PDF DOI PMID 22513136

  23. R. Visser, W.J.H. Veldkamp, D. Beijerinck, P.A.M. Bun, J.J.M. Deurenberg, M.W. Imhof-Tas, K.H. Schuur, M.M. Snoeren, G.J. den Heeten, N. Karssemeijer and M.J.M. Broeders. "Increase in perceived case suspiciousness due to local contrast optimisation in digital screening mammography", European Radiology 2012;22:908-914. Abstract/PDF DOI PMID 22071778

  24. R. Wittenberg, J.F. Peters, M. Weber, R.J. Lely, L.P.J. Cobben, M. Prokop and C.M. Schaefer-Prokop. "Stand-alone performance of a computer-assisted detection prototype for detection of acute pulmonary embolism: a multi-institutional comparison", British Journal of Radiology 2012;85:758-764. Abstract/PDF DOI PMID 22167514

  25. L. Hogeweg, C.I. Sánchez, P.A. de Jong, P. Maduskar and B. van Ginneken. "Clavicle segmentation in chest radiographs", Medical Image Analysis 2012;16:1490 - 1502. Abstract/PDF DOI PMID 22998970

  26. F.A.A. Mohamed Hoesein, P. Zanen, H.M. Boezen, H.J.M. Groen, B. van Ginneken, P.A. de Jong, D.S. Postma and J.-W.J. Lammers. "Lung function decline in heavy male smokers relates to baseline airflow obstruction severity", Chest 2012;142:1530-1538. Abstract/PDF DOI PMID 22722231

  27. A.M. Mendrik, E.P.A. Vonken, G.A.P. de Kort, B. van Ginneken, E.J. Smit, M.A. Viergever and M. Prokop. "Improved Arterial Visualization in Cerebral CT Perfusion-Derived Arteriograms Compared with Standard CT Angiography: A Visual Assessment Study", American Journal of Neuroradiology 2012;33:2171-2177. Abstract/PDF DOI PMID 22627803

  28. A.S. Fortuin, W.M.L.L.G. Deserno, H.J.M. Meijer, G.J. Jager, S. Takahashi, O.A. Debats, S.N. Reske, C. Schick, B.J. Krause, I. van Oort, A.J. Witjes, Y.L. Hoogeveen, E.N.J. Th van Lin and J.O. Barentsz. "Value of PET/CT and MR Lymphography in Treatment of Prostate Cancer Patients with Lymph Node Metastases", International Journal of Radiation Oncology, Biology, Physics 2012;84:712-718. Abstract/PDF DOI PMID 22417806

  29. P.C. Vos, J.O. Barentsz, N. Karssemeijer and H.J. Huisman. "Automatic computer-aided detection of prostate cancer based on multiparametric magnetic resonance image analysis", Physics in Medicine and Biology 2012;57:1527-1542. Abstract/PDF DOI PMID 22391091

  30. K. Murphy, J.P.W. Pluim, E.M. van Rikxoort, P.A. de Jong, B. de Hoop, H.A. Gietema, O. Mets, M. de Bruijne, P. Lo, M. Prokop and B. van Ginneken. "Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT", Medical Physics 2012;39:1650-1662. Abstract/PDF DOI PMID 22380397

  31. P.C. Jacobs, M.J.A. Gondrie, Y. van der Graaf, H.J. de Koning, I. Išgum, B. van Ginneken and W.P.T.M. Mali. "Coronary Artery Calcium Can Predict All-Cause Mortality and Cardiovascular Events on Low-Dose CT Screening for Lung Cancer", American Journal of Roentgenology 2012;198:505-511. Abstract/PDF DOI PMID 22357989

  32. F.A.A. Mohamed Hoesein, E.M. van Rikxoort, B. van Ginneken, P.A. de Jong, M. Prokop, J.-W.J. Lammers and P. Zanen. "CT-quantified emphysema distribution is associated with lung function decline", European Respiratory Journal 2012;40:844-850. Abstract/PDF DOI PMID 22323577

  33. M. Velikova, P.J.F. Lucas, M. Samulski and N. Karssemeijer. "A probabilistic framework for image information fusion with an application to mammographic analysis", Medical Image Analysis 2012;16:865-875. Abstract/PDF DOI PMID 22326491

  34. R. Wittenberg, F.H. Berger, J.F. Peters, M. Weber, F. van Hoorn, L.F.M. Beenen, M.M.A.C. van Doorn, J. van Schuppen, I.A.J. Zijlstra, M. Prokop and C.M. Schaefer-Prokop. "Acute pulmonary embolism: effect of a computer-assisted detection prototype on diagnosis--an observer study", Radiology 2012;262:305-313. Abstract/PDF DOI PMID 22190659

  35. T. Tan, B. Platel, H. Huisman, C.I. Sánchez, R. Mus and N. Karssemeijer. "Computer Aided Lesion Diagnosis in Automated 3D Breast Ultrasound Using Coronal Spiculation", IEEE Transactions on Medical Imaging 2012;31:1034-1042. Abstract/PDF DOI PMID 22271831

  36. R. Wittenberg, J.W. van Vliet, B. Ghaye, J.F. Peters, C.M. Schaefer-Prokop and E. Coche. "Comparison of automated 4-chamber cardiac views versus axial views for measuring right ventricular enlargement in patients with suspected pulmonary embolism", European Journal of Radiology 2012;81:218-222. Abstract/PDF DOI PMID 21315530

  37. M.G.J. Kallenberg and N. Karssemeijer. "Compression paddle tilt correction in full-field digital mammograms", Physics in Medicine and Biology 2012;57:703-715. Abstract/PDF DOI PMID 22241616

  38. H.J.M. Meijer, O.A. Debats, M. Kunze-Busch, P. van Kollenburg, J.W. Leer, J.A. Witjes, J.H.A.M. Kaanders, J.O. Barentsz and E.N.J.T. van Lin. "Magnetic Resonance Lymphography-Guided Selective High-Dose Lymph Node Irradiation in Prostate Cancer", International Journal of Radiation Oncology, Biology, Physics 2012;82:175-183. Abstract/PDF DOI PMID 21075555

  39. O.M. Mets, P.A. de Jong, B. van Ginneken, H.A. Gietema and J.W.J. Lammers. "Quantitative Computed Tomography in COPD: Possibilities and Limitations", Lung 2012;190:133-145. Abstract/PDF DOI PMID 22179694

  40. D. Yakar, O.A. Debats, J.G.R. Bomers, M.G. Schouten, P.C. Vos, E. van Lin, J.J. Fütterer and J.O. Barentsz. "Predictive value of MRI in the localization, staging, volume estimation, assessment of aggressiveness, and guidance of radiotherapy and biopsies in prostate cancer", Journal of Magnetic Resonance Imaging 2012;35:20-31. Abstract/PDF DOI PMID 22174000

  41. D. Chong, M.S. Brown, H.J. Kim, E.M. van Rikxoort, L. Guzman, M.F. McNitt-Gray, M. Khatonabadi, M. Galperin-Aizenberg, K. Yang, Y. Jung and J.G. Goldin. "Reproducibility of volume and densitometric measures of emphysema on repeat computed tomography with an interval of 1 week", European Radiology 2012:287-294. Abstract/PDF DOI PMID 22011903

  42. D. Vukadinovic, S. Rozie, M. van Gils, T. van Walsum, R. Manniesing, A. van der Lugt and W.J. Niessen. "Automated versus manual segmentation of atherosclerotic carotid plaque volume and components in CTA: associations with cardiovascular risk factors", International Journal of Cardiovascular Imaging 2012;28:877-887. Abstract/PDF DOI PMID 21614484

  43. T. Hambrock, C. Hoeks, C. Hulsbergen-van de Kaa, T. Scheenen, J. Fütterer, S. Bouwense, I. van Oort, F. Schröder, H. Huisman and J. Barentsz. "Prospective Assessment of Prostate Cancer Aggressiveness Using 3-T Diffusion-Weighted Magnetic Resonance Imaging-Guided Biopsies Versus a Systematic 10-Core Transrectal Ultrasound Prostate Biopsy Cohort", European Urology 2012;61:177-184. Abstract/PDF DOI PMID 21924545

  44. M.G. Schouten, J.G.R. Bomers, D. Yakar, H. Huisman, E. Rothgang, D. Bosboom, T.W.J. Scheenen, S. Misra and J.J. Fütterer. "Evaluation of a robotic technique for transrectal MRI-guided prostate biopsies", European Radiology 2012;22:476-483. Abstract/PDF DOI PMID 21956697

  45. O.M. Mets, K. Murphy, P. Zanen, H.A. Gietema, J.W. Lammers, B. van Ginneken, M. Prokop and P.A. de Jong. "The relationship between lung function impairment and quantitative computed tomography in chronic obstructive pulmonary disease", European Radiology 2012;22:120-128. Abstract/PDF DOI PMID 21837396

  46. E.M. van Rikxoort, J. Goldin, F. Abtin, H.J. Kim, P. Lu, B. van Ginneken, G. Shaw, M. Galperin-Aizenberg and M.S. Brown. "A method for the automatic quantification of the completeness of pulmonary fissures: evaluation in a database of subjects with severe emphysema", European Radiology 2012;22:302-309. Abstract/PDF DOI PMID 21984417

  47. H.J.M. Meijer, E.N. van Lin, O.A. Debats, J.A. Witjes, P.N. Span, J.H.A.M. Kaanders and J.O. Barentsz. "High Occurrence of Aberrant Lymph Node Spread on Magnetic Resonance Lymphography in Prostate Cancer Patients with a Biochemical Recurrence After Radical Prostatectomy", International Journal of Radiation Oncology, Biology, Physics 2012;82 (4):1405-1410. Abstract/PDF DOI PMID 21640507

  48. C.I. Sánchez, M. Niemeijer, I. Išgum, A.V. Dumitrescu, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Contextual computer-aided detection: Improving bright lesion detection in retinal images and coronary calcification identification in CT scans", Medical Image Analysis 2012;16(1):50-62. Abstract/PDF DOI PMID 21689964


Papers in conference proceedings

  1. R. Moshavegh, B. Ehteshami Bejnordi, A. Mehnert, K. Sujathan, P. Malm and E. Bengtsson. "Automated segmentation of free-lying cell nuclei in Pap smears for malignancy-associated change analysis", in: Engineering in Medicine and Biology Society (EMBC), 2012. Abstract/PDF DOI

  2. T.T.J.P. Kockelkorn, R. Ramos, J. Ramos, C.I. Sánchez, P.A. de Jong, C. Schaefer-Prokop, J.C. Grutters, B. van Ginneken and M.A. Viergever. "Interactive classification of lung tissue in CT scans by combining prior and interactively obtained training data: a simulation study", in: International Conference on Pattern Recognition, 2012, pages 105-108. Abstract/PDF

  3. A. Gubern-Mérida, M. Kallenberg, R. Martí and N. Karssemeijer. "Segmentation of the pectoral muscle in breast MRI using atlas-based approaches", in: Medical Image Computing and Computer-Assisted Intervention, volume 15 of Lecture Notes in Computer Science, 2012, pages 371-378. Abstract/PDF DOI PMID 23286070

  4. S. Muenzing, B. van Ginneken and J.P.W. Pluim. "DIRBoost: An algorithm for boosting deformable image registration", in: IEEE International Symposium on Biomedical Imaging, 2012, pages 1339-1342. Abstract/PDF DOI

  5. G. Litjens, N. Karssemeijer and H.J. Huisman. "A multi-atlas approach for prostate segmentation in MRI", in: MICCAI Workshop: Prostate Cancer Imaging: The PROMISE12 Prostate Segmentation Challenge, 2012. PDF

  6. S.E.A. Muenzing, B. van Ginneken and J.P.W. Pluim. "On Combining Algorithms for Deformable Image Registration", in: Biomedical Image Registration of Lecture Notes in Computer Science, 2012, pages 256-265. Abstract/PDF DOI

  7. J. Ramos, T. Kockelkorn, B. van Ginneken, M.A. Viergever, R. Ramos and A. Campilho. "Supervised Content Based Image Retrieval Using Radiology Reports", in: Image Analysis and Recognition, volume 7325 of Lecture Notes in Computer Science, 2012, pages 249-258. Abstract/PDF DOI

  8. G. Litjens, O.A. Debats, W.J.M. van de Ven, N. Karssemeijer and H.J. Huisman. "A pattern recognition approach to zonal segmentation of the prostate on MRI", in: Medical Image Computing and Computer-Assisted Intervention, volume 7511 of Lecture Notes in Computer Science, 2012, pages 413-420. Abstract/PDF DOI

  9. J. Bozek, M.G.J. Kallenberg, M. Grgic and N. Karssemeijer. "Comparison of Lesion Size Using Area and Volume in Full Field Digital Mammograms", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 96-103. Abstract/PDF DOI

  10. J. Melendez, C.I. Sánchez, R. Hupse, B. van Ginneken and N. Karssemeijer. "Potential of a Standalone Computer-Aided Detection System for Breast Cancer Detection in Screening Mammography", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 682-689. Abstract/PDF DOI

  11. J.M. Lesniak, G. van Schie, C. Tanner, B. Platel, H. Huisman, N. Karssemeijer and G. Szekely. "Multimodal Classification of Breast Masses in Mammography and MRI using Unimodal Feature Selection and Decision Fusion", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 88-95. Abstract/PDF DOI

  12. C. Tromans, G. van Schie, N. Karssemeijer and M. Brady. "A Hypothesis-Test Framework for Quantitative Lesion Detection and Diagnosis", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 458-465. Abstract/PDF DOI

  13. T. Tan, B. Platel, R. Mus and N. Karssemeijer. "Detection of Breast Cancer in Automated 3D Breast Ultrasound", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, pages 831505-1-831505-8. Abstract/PDF DOI

  14. R. van den Boom, M. Oei, S. Lafebre, L. Oostveen, A. Meijer, S. Steens, M. Prokop, B. van Ginneken and R. Manniesing. "Brain Tissue Segmentation in 4D CT Images Using Voxel Classification", in: Medical Imaging, volume 8314 of Proceedings of the SPIE, 2012, pages 83144B-83144B-6. Abstract/PDF DOI

  15. A. Firouzian, R. Manniesing, C. Metz, S. Klein, B.K. Velthuis, G. Rinkel, A. van der Lugt and W. Niessen. "Intracranial aneurysm growth quantification on CTA", in: Medical Imaging, volume 8314 of Proceedings of the SPIE, 2012, pages 831448-1-83148-9. Abstract/PDF DOI

  16. M. Koek, F.B. Goncalves, D. Poldermans, W. Niessen and R. Manniesing. "Semi-Automated Subcutaneous and Visceral Adipose Tissue Quantification in Computed Tomography", in: MICCAI Workshop on Computational and Clinical Applications in Abdominal Imaging, volume 7029 of Lecture Notes in Computer Science, 2012, pages 215-222. Abstract/PDF DOI

  17. E.M. van Rikxoort, P.A. de Jong, O.M. Mets and B. van Ginneken. "Automatic classication of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, pages 83150P-83150P-6. Abstract/PDF DOI

  18. G. Litjens, J. Barentsz, N. Karssemeijer and H. Huisman. "Automated computer-aided detection of prostate cancer in MR images: from a whole-organ to a zone-based approach", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, pages 83150G-83150G-6. Abstract/PDF DOI


Abstracts

  1. R. Mus, R. Mann, A. Moyakine, C. Geppert, B. Platel, N. Karssemeijer and J. Barentsz. "MRI Screening of the Breast in Less than 2 Minutes: A Prelude to Extend MR Breast Screening Possibilities", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  2. B. Durmus, R. Gaillard, R. Manniesing, D. Heppe, A. Hofman and V. Jaddoe. "Maternal Smoking During Pregnancy and Adiposity in School Age Children: The Generation R Study", in: International Society for Development Origins of Health and Disease, 2012. Abstract

  3. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, L. Meiss, A. Tiehuis, E. Koedam, L. Quekel, M. Snoeren, R. Wittenberg, N. Karssemeijer and C. Schaefer-Prokop. "Botsuppressie in thoraxfoto's verbetert de detectie van pulmonale nodules door radiologen", in: Radiologen Dagen, 2012. Abstract

  4. B.C. Lassen, M. Schmidt, E.M. van Rikxoort, B. van Ginneken, C. Jacobs, J. Kuhnigk and M. Prokop. "Automated and interactive image analysis workstation for the extraction of imaging biomarkers related to chronic obstructive pulmonary disease from thoracic computed tomography scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  5. C. Jacobs, J. Kuhnigk, E.M. van Rikxoort, T. Twellmann, P. de Jong, H. Gietema, B. Lassen, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Optimized workflow for low dose thoracic CT lung cancer screening: automated detection, measurement, temporal matching and volumetry and mass analysis, individualized prediction of cancer risk, structured reporting with follow-up recommendation", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  6. G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Computerized characterization of central gland lesions using texture and relaxation features from T2-weighted prostate MRI", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  7. J. Melendez, C.I. Sánchez, B. van Ginneken and N. Karssemeijer. "Detection of breast carcinomas potentially missed during screening by means of a standalone CAD system", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  8. A. Nair, Desai, S. R, C.S.J., A.J. Edey, S.L.F. Walsh, G. Robinson, J.K. Field, D.R. Baldwin, R. Vliegenthart, M. Oudkerk, B. van Ginneken, P.A. de Jong, M. Prokop, D.M. Hansell and A. Devaraj. "The impact of numbers of readers and methods of arbitration on pulmonary nodule detection in the context of lung cancer screening with CT", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  9. B. van Ginneken, L. Hogeweg, P. Maduskar, L. Peters-Bax, R. Dawson, K. Dheda, H. Ayles, J. Melendez and C.I. Sánchez. "Performance of inexperienced and experienced observers in detection of active tuberculosis on digital chest radiographs with and without the use of computer-aided diagnosis", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  10. E.J. Smit, E. Vonken, F.J. Meijer, J. Dankbaar, A. Horsch, B. van Ginneken, B. Velthuis, I. van der Schaaf and M. Prokop. "Acute Ischemic Stroke Assessment on CT-Angiography That Derived from CT-Perfusion Images", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  11. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, M. Snoeren, L. Quekel, E. Koedam, N. Karssemeijer and C. Schaefer-Prokop. "Bone suppression imaging improves observer performance for the detection of lung nodules in chest radiographs", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  12. B. Platel, T. Welte, R. Mus, R. Mann, C.I. Sánchez, H. Hahn and N. Karssemeijer. "Automated Evaluation of an Ultrafast MR Imaging Protocol for the Characterization of Breast Lesions", in: Annual Meeting of the Radiological Society of North America, 2012. PDF

  13. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, L. Meiss, A. Tiehuis, N. Karssemeijer and C. Schaefer-Prokop. "Bone suppression imaging improves observer performance for the detection of lung nodules in chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  14. S. Schalekamp, B. van Ginneken, E. Koedam, L. Quekel, M. Snoeren, R. Wittenberg, N. Karssemeijer and C. Schaefer-Prokop. "Computer aided detection helps radiologists to detect pulmonary nodules in chest radiographs, when having bone suppressed images available", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  15. L. Gallardo-Estrella, B. van Ginneken, O.M. Mets, P. Zanen, P.A. de Jong, C.M. Schaefer-Prokop and E.M. van Rikxoort. "Trachea Shape Analysis from Inspiration and Expiration Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  16. B. Lassen, E.M. van Rikxoort, J. Kuhnigk and B. van Ginneken. "Fast and Intuitive Interactive Lung Lobe Segmentation in Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  17. E.M. van Rikxoort, B. van Ginneken, M. Schmidt, A. Lahaije, H. van Helvoort, M. Prokop and Y. Heijdra. "Dynamic Hyperinflation in COPD Patients: Is It Related to Emphysema and Airway Morphology in Inspiration and Expiration Thoracic CT?", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  18. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J. Kuhnigk and B. van Ginneken. "Automatic Quantification of Airway Dimensions in COPD: Processing Large Databases of Chest CT scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  19. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, P. Zanen, J. Kuhnigk and B. van Ginneken. "Relating Automatic Quantification of Airway Wall Thickness, Emphysema and Air Trapping in Inspiration and Expiration Chest CT Scans to COPD GOLD Stages", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  20. C. Jacobs, E.M. van Rikxoort, T. Twellmann, P. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Improved computer-aided detection of pulmonary nodules by combining a solid and subsolid nodule CAD system", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  21. J.J. Mordang, M.T.H. Oei, R. van den Boom, H.O.A. Laue, L.J. Oostveen, M. Prokop, B. van Ginneken and R. Manniesing. "Effect of Dose Reduction in CT Perfusion Scans on Cerebral Blood Flow and Volume Computed with Three Perfusion Software Packages: Analysis with a Digital Phantom", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  22. M. Kallenberg, C. van Gils, R.M. Mann and N. Karssemeijer. "Association between automated, volumetric measures of breast density and diagnostic outcome of mammography screening examinations", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  23. L. Gallardo-Estrella, P.A. de Jong, O.M. Mets, B. van Ginneken and E.M. van Rikxoort. "Automatic classification of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  24. R. Mann, R. Mus, C. Geppert, C. Frentz, N. Karssemeijer, H. Huisman and B. Platel. "Initial maximum slope of the contrast enhancement versus time curve for dynamic evaluation of breast lesions on ultrafast breast MRIs", in: European Congress of Radiology, 2012. Abstract URL

  25. R. Mann, R. Mus, C. Geppert, C. Frentz, N. Karssemeijer, H. Huisman and B. Platel. "Dynamic analysis of breast lesions: Can we use the wash-in phase instead of the wash-out phase?", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2012. PDF

  26. L. Wang, B. Platel, T. Ivanovskaya, M. Harz and H. Hahn. "Fully automatic breast segmentation in 3D breast MRI", in: IEEE International Symposium on Biomedical Imaging, 2012. Abstract/PDF

  27. M.J.J.P. van Grinsven, B. van Ginneken and C.I. Sánchez. "Web-based workstation for the analysis of color fundus images", in: ISBI Medical Image Analysis Workshop, 2012. Abstract

  28. M.J.J.P. van Grinsven, J.P.H. van de Ven, Y.T.E. Lechanteur, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic Drusen Detection and Quantification for Diagnosis of Age-Related Macular Degeneration", in: Association for Research in Vision and Ophthalmology, 2012. Abstract

  29. E. Vos, G. Litjens, T. Kobus, T. Hambrock, C. Hulsbergen van de Kaa, H. Huisman and T. Scheenen. "Dynamic contrast enhanced MR imaging for the assessment of prostate cancer aggressiveness at 3T", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2012. PDF

  30. M.T.H. Oei, R. van den Boom, L.J. Oostveen, S. Lafebre, E.J. Smit, B. van Ginneken, R. Manniesing and M. Prokop. "Hybrid digital phantom for optimizing data acquisition strategies in CT perfusion", in: European Congress of Radiology, 2012. Abstract

  31. R. van den Boom, M. Oei, L. Oostveen, S. Lafebre, B. van Ginneken, R. Manniesing and M. Prokop. "Effect of radiation exposure on quantitative evaluation of cerebral CT perfusion maps: results from a hybrid digital phantom", in: European Congress of Radiology, 2012. Abstract

  32. C. Jacobs, E.T. Scholten, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Lung Cancer Screening: Retrospective Evaluation of Potential Benefit", in: European Congress of Radiology, 2012. Abstract


Theses

  1. F. Ciompi. "Multi-Class Learning for Vessel Characterization in Intravascular Ultrasound", PhD thesis, University of Barcelona, 2012. Abstract/PDF URL

  2. R. Hupse. "Detection of malignant masses in breast cancer screening by computer assisted decision making", PhD thesis, Radboud University Nijmegen, 2012. Abstract/PDF URL

  3. M. Kallenberg. "Quantitative Analysis of Breast Images", PhD thesis, Radboud University Nijmegen, 2012. Abstract/PDF URL

  4. D.W. de Boo. "Advances in digital chest radiography: impact on reader performance", PhD thesis, Universiteit van Amsterdam, 2012. Abstract/PDF URL

  5. R. Wittenberg. "Computer-Assisted Detection of Acute Pulmonary Embolism", PhD thesis, Utrecht University, The Netherlands, 2012. Abstract/PDF URL

  6. R. Brecheisen. "Visualization of uncertainty in fiber tracking based on diffusion tensor imaging", PhD thesis, Technische Universiteit Eindhoven, 2012. Abstract/PDF URL


2011

Papers in international journals

  1. O.A. Debats, G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Automated 3-Dimensional Segmentation of Pelvic Lymph Nodes in Magnetic Resonance Images", Medical Physics 2011;38:6178-6187. Abstract/PDF DOI PMID 22047383

  2. X. Carrillo, E. Fernandez-Nofrerias, F. Ciompi, O. Rodriguez-Leor, P. Radeva, N. Salvatella, O. Pujol, J. Mauri and A. Bayes-Genis. "Changes in radial artery volume assessed using intravascular ultrasound: a comparison of two vasodilator regimens in transradial coronary interventions", Journal of invasive cardiology 2011;23:401-404. Abstract URL

  3. J. Seabra, F. Ciompi, O. Pujol, J. Mauri, P. Radeva and J. Sanches. "Rayleigh mixture model for plaque characterization in intravascular ultrasound", IEEE Transactions on Biomedical Engineering 2011;58:1314-1324. Abstract/PDF URL

  4. T. Hambrock, D.M. Somford, H.J. Huisman, I.M. van Oort, J.A. Witjes, C.A. Hulsbergen-van de Kaa, T. Scheenen and J.O. Barentsz. "Relationship between Apparent Diffusion Coefficients at 3.0-T MR Imaging and Gleason Grade in Peripheral Zone Prostate Cancer", Radiology 2011;259:453-461. Abstract/PDF DOI PMID 21406633

  5. R.M. Mann, J. Veltman, H. Huisman and C. Boetes. "Comparison of enhancement characteristics between invasive lobular carcinoma and invasive ductal carcinoma", Journal of Magnetic Resonance Imaging 2011;34:293-300. Abstract/PDF DOI PMID 21780225

  6. A. Melbourne, J. Hipwell, M. Modat, T. Mertzanidou, H. Huisman, S. Ourselin and D.J. Hawkes. "The effect of motion correction on pharmacokinetic parameter estimation in dynamic-contrast-enhanced MRI", Physics in Medicine and Biology 2011;56:7693-7708. Abstract/PDF DOI PMID 22086390

  7. D.W. de Boo, M. Weber, E.E. Deurloo, G.J. Streekstra, N.J. Freling, D.A. Dongelmans and C.M. Schaefer-Prokop. "Computed radiography versus mobile direct radiography for bedside chest radiographs: impact of dose on image quality and reader agreement", Clinical Radiology 2011;66:826-832. Abstract/PDF DOI PMID 21570679

  8. M. Nillesen, R. Lopata, H.J. Huisman, J. Thijssen, L. Kapusta and C. de Korte. "Correlation based 3-D segmentation of the left ventricle in pediatric echocardiographic images using radio-frequency data", Ultrasound in Medicine and Biology 2011;37:1409-1420. Abstract/PDF DOI PMID 21683512

  9. B. van Ginneken, C.M. Schaefer-Prokop and M. Prokop. "Computer-aided Diagnosis: how to Move from the Laboratory to the Clinic", Radiology 2011;261(3):719-732. Abstract/PDF DOI PMID 22095995

  10. D.W. de Boo, M. Uffmann, S. Bipat, E.F.A. Boorsma, M.J. Scheerder, M. Weber and C.M. Schaefer-Prokop. "Gray-Scale Reversal for the Detection of Pulmonary Nodules on a PACS Workstation", American Journal of Roentgenology 2011;197:1096-1100. Abstract/PDF DOI PMID 22021501

  11. O.M. Mets, C.F.M. Buckens, P. Zanen, I. Išgum, B. van Ginneken, M. Prokop, H.A. Gietema, J.W.J. Lammers, R. Vliegenthart, M. Oudkerk, R.J. van Klaveren, H.J. de Koning, W.P.T.M. Mali and P.A. de Jong. "Identification of Chronic Obstructive Pulmonary Disease in Lung Cancer Screening Computed Tomographic Scans", Journal of the American Medical Association 2011;306:1775-1781. Abstract/PDF DOI PMID 22028353

  12. D.W. de Boo, M. Uffmann, M. Weber, S. Bipat, E.F. Boorsma, M.J. Scheerder, N.J. Freling and C.M. Schaefer-Prokop. "Computer-aided Detection of Small Pulmonary Nodules in Chest Radiographs An Observer Study", Academic Radiology 2011;18:1507-1514. Abstract/PDF DOI PMID 21963532

  13. R. Wittenberg, J.F. Peters, J.J. Sonnemans, S. Bipat, M. Prokop and C.M. Schaefer-Prokop. "Impact of image quality on the performance of computer-aided detection of pulmonary embolism", American Journal of Roentgenology 2011;196:95-101. Abstract/PDF DOI PMID 21178052

  14. D. Yakar, S.W.T.P.J. Heijmink, C.A. Hulsbergen-van de Kaa, H. Huisman, J.O. Barentsz, J.J. Fütterer and T.W.J. Scheenen. "Initial results of 3-dimensional 1H-magnetic resonance spectroscopic imaging in the localization of prostate cancer at 3 Tesla: should we use an endorectal coil?", Investigative Radiology 2011;46:301-306. Abstract/PDF DOI PMID 21217527

  15. M.E.A.P.M. Adriaensen, H.H.H. Feringa, C.M. Schaefer-Prokop, S.A.P. Cornelissen, B.A. Zonnenberg and M. Prokop. "Focal fatty areas in the myocardium of patients with tuberous sclerosis complex: a unique finding", Journal of Thoracic Imaging 2011;26:W12-W13. Abstract/PDF DOI PMID 20921911

  16. M.E.A.P.M. Adriaensen, M.F.M. van Oosterhout, H.H.H. Feringa, C.M. Schaefer-Prokop, B.A. Zonnenberg and M. Prokop. "Mature fat cells in the myocardium of patients with tuberous sclerosis complex", Journal of Clinical Pathology 2011;64:244-245. Abstract/PDF DOI PMID 21217088

  17. C.M.A. Hoeks, J.O. Barentsz, T. Hambrock, D. Yakar, D.M. Somford, S.W.T.P.J. Heijmink, T.W.J. Scheenen, P.C. Vos, H. Huisman, I.M. van Oort, J.A. Witjes, A. Heerschap and J.J. Fütterer. "Prostate Cancer: Multiparametric MR Imaging for Detection, Localization, and Staging", Radiology 2011;261:46-66. Abstract/PDF DOI PMID 21931141

  18. J.A.A.M. van Dijck, J.D.M. Otten, N. Karssemeijer, P. Kenemans, A.L.M. Verbeek and M.J. van der Mooren. "Less mammographic density after nasal versus oral administration of postmenopausal hormone therapy", Climacteric 2011;14:683-688. Abstract/PDF DOI PMID 21942620

  19. W.M.L.L.G. Deserno, O.A. Debats, T. Rozema, A.S. Fortuin, R.A.M. Heesakkers, Y. Hoogeveen, P.G.M. Peer, J.O. Barentsz and E.N.J.T. van Lin. "Comparison of Nodal Risk Formula and MR Lymphography for Predicting Lymph Node Involvement in Prostate Cancer", International Journal of Radiation Oncology, Biology, Physics 2011;81:8-15. Abstract/PDF DOI PMID 20800390

  20. E.J.L. Brunenberg, B. Platel, P.A.M. Hofman, B. ter Haar Romeny and V. Visser-Vandewalle. "Magnetic resonance imaging techniques for visualization of the subthalamic nucleus", Journal of Neurosurgery 2011;115:971-984. Abstract/PDF DOI PMID 21800960

  21. M.E.A.P.M. Adriaensen, C.M. Schaefer-Prokop, D.A.C. Duyndam, B.A. Zonnenberg and M. Prokop. "Radiological evidence of lymphangioleiomyomatosis in female and male patients with tuberous sclerosis complex", Clinical Radiology 2011;66:625-628. Abstract/PDF DOI PMID 21459371

  22. S. Brandt, G. Karemore, N. Karssemeijer and M. Nielsen. "An Anatomically Oriented Breast Coordinate System for Mammogram Analysis", IEEE Transactions on Medical Imaging 2011;30:1841-1851. Abstract/PDF DOI PMID 21609879

  23. G. van Schie, C. Tanner, P. Snoeren, M. Samulski, K. Leifland, M.G. Wallis and N. Karssemeijer. "Correlating locations in ipsilateral breast tomosynthesis views using an analytical hemispherical compression model", Physics in Medicine and Biology 2011;56:4715-4730. Abstract/PDF DOI PMID 21737868

  24. M. Niemeijer, X. Xu, A. Dumitrescu, P. Gupta, B. van Ginneken, J. Folk and M. Abràmoff. "Automated measurement of the arteriolar-to-venular width ratio in digital color fundus photographs", IEEE Transactions on Medical Imaging 2011;31:1941-1950. Abstract/PDF DOI PMID 21690008

  25. A.M. Mendrik, E. Vonken, B. van Ginneken, H.W. de Jong, A. Riordan, T. van Seeters, E.J. Smit, M.A. Viergever and M. Prokop. "TIPS bilateral noise reduction in 4D CT perfusion scans produces high-quality cerebral blood flow maps", Physics in Medicine and Biology 2011;56:3857-3872. Abstract/PDF DOI PMID 21654042

  26. K. Murphy, B. van Ginneken, J.M. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao, K. Du, G.E. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. de Bruijne, X. Han, M.P. Heinrich, J.A. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J.R. McClelland, S. Ourselin, S.E.A. Muenzing, M.A. Viergever, D.D. Nigris, D.L. Collins, T. Arbel, M. Peroni, R. Li, G.C. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J.C. Gee, M. Staring, S. Klein, B.C. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut and J.P.W. Pluim. "Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge", IEEE Transactions on Medical Imaging 2011;31:1901-1920. Abstract/PDF DOI PMID 21632295

  27. F.A.A. Mohamed Hoesein, P. Zanen, B. van Ginneken, R.J. van Klaveren and J.-W.J. Lammers. "Association of the transfer coefficient of the lung for carbon monoxide with emphysema progression in male smokers", European Respiratory Journal 2011;38:1012-1018. Abstract/PDF DOI PMID 21565924

  28. C.I. Sánchez, M. Niemeijer, A.V. Dumitrescu, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Evaluation of a Computer-Aided Diagnosis system for Diabetic Retinopathy screening on public data", Investigative Ophthalmology and Visual Science 2011;52:4866-4871. Abstract/PDF DOI PMID 21527381

  29. G.J. den Heeten and N. Karssemeijer. "[Computerised assessment of screening mammograms]", Nederlands Tijdschrift voor Geneeskunde 2011;155:A3025. Abstract/PDF PMID 21466728

  30. M. Niemeijer, M. Loog, M.D. Abràmoff, M.A. Viergever, M. Prokop and B. van Ginneken. "On Combining Computer-Aided Detection Systems", IEEE Transactions on Medical Imaging 2011;30:215-223. Abstract/PDF DOI PMID 20813633

  31. M. Samulski and N. Karssemeijer. "Optimizing Case-based Detection Performance in a Multiview CAD System for Mammography", IEEE Transactions on Medical Imaging 2011;30:1001-1009. Abstract/PDF DOI PMID 21233045

  32. F.A.A. Mohamed Hoesein, B. de Hoop, P. Zanen, H. Gietema, C.L.J.J. Kruitwagen, B. van Ginneken, I. Išgum, C. Mol, R.J. van Klaveren, A.E. Dijkstra, H.J.M. Groen, H.M. Boezen, D.S. Postma, M. Prokop and J.-W.J. Lammers. "CT-quantified emphysema in male heavy smokers: association with lung function decline", Thorax 2011;66:782-787. Abstract/PDF DOI PMID 21474499

  33. A.B. Rosenkrantz, M. Oei, J.S. Babb, B.E. Niver and B. Taouli. "Diffusion-weighted imaging of the abdomen at 3.0 Tesla: image quality and apparent diffusion coefficient reproducibility compared with 1.5 Tesla", Journal of Magnetic Resonance Imaging 2011;33:128-135. Abstract/PDF DOI PMID 21182130

  34. M.G. Kallenberg, M. Lokate, C.H. van Gils and N. Karssemeijer. "Automatic breast density segmentation: an integration of different approaches", Physics in Medicine and Biology 2011;56:2715-2729. Abstract/PDF DOI PMID 21464531

  35. M. Nielsen, G. Karemore, M. Loog, J. Raundahl, N. Karssemeijer, J.D.M. Otten, M.A. Karsdal, C.M. Vachon and C. Christiansen. "A novel and automatic mammographic texture resemblance marker is an independent risk factor for breast cancer", Cancer Epidemiology 2011;35:381-387. Abstract/PDF DOI PMID 21146484

  36. A. Firouzian, R. Manniesing, H.Z. Flach, R. Risselada, F. van Kooten, M. Sturkenboom, A. van der Lugt and W. Niessen. "Intracranial Aneurysm Segmentation in 3D CT Angiography: Method and Quantitative Validation with and without Prior Noise Filtering", European Journal of Radiology 2011;79:299-304. Abstract/PDF DOI PMID 20346606

  37. P.A. de Jong, J.A. Achterberg, O.A.M. Kessels, B. van Ginneken, L. Hogeweg, F.J. Beek and S.W.J. Terheggen-Lagro. "Modified Chrispin-Norman chest radiography score for cystic fibrosis: observer agreement and correlation with lung function", European Radiology 2011;21:722-729. Abstract/PDF DOI PMID 20924586

  38. K. Murphy, B. van Ginneken, S. Klein, M. Staring, B.J. de Hoop, M.A. Viergever and J.P.W. Pluim. "Semi-automatic construction of reference standards for evaluation of image registration", Medical Image Analysis 2011;15:71-84. Abstract/PDF DOI PMID 20709592


Papers in conference proceedings

  1. L. Gallardo-Estrella and A. Poncela. "Human/Robot Interface for Voice Teleoperation of a Robotic Platform", in: Advances in Computational Intelligence , volume 6691 of Lecture Notes in Computer Science, 2011, pages 240-247. Abstract/PDF DOI

  2. M. Alberti, C. Gatta, S. Balocco, F. Ciompi, O. Pujol, J. Silva, X. Carrillo and P. Radeva. "Automatic branching detection in IVUS sequences", in: Pattern Recognition and Image Analysis, 2011, pages 126-133. Abstract/PDF URL

  3. S. Balocco, C. Gatta, F. Ciompi, O. Pujol, X. Carrillo, J. Mauri and P. Radeva. "Combining Growcut and temporal correlation for IVUS lumen segmentation", in: Pattern Recognition and Image Analysis, 2011, pages 556-563. Abstract/PDF URL

  4. F. Ciompi, O. Pujol, C. Gatta, X. Carrillo, J. Mauri and P. Radeva. "A holistic approach for the detection of media-adventitia border in IVUS", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2011, pages 411-419. Abstract/PDF URL

  5. P. Lo, E.M. van Rikxoort, J.G. Goldin, F. Abtin, M. de Bruijne and M.S. Brown. "A bottom-up approach for labeling of human airway trees", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 23-34. Abstract

  6. E.M. van Rikxoort and B. van Ginneken. "Automatic segmentation of the lungs and lobes from thoracic CT scans", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 261-268. Abstract

  7. T. Tan, B. Platel, H. Huisman and N. Karssemeijer. "Chest wall segmentation in automated 3D breast ultrasound using a cylinder model", in: MICCAI Workshop: Breast Image Analysis, 2011. PDF

  8. T. Tan, B. Platel, T. Twellmann, G. van Schie, R. Mus, A. Grivegnee, L. Tabar and N. Karssemeijer. "Computer aided interpretation of lesions in automated 3D breast ultrasound", in: MICCAI Workshop: Breast Image Analysis, 2011. PDF

  9. C. Tanner, G. van Schie, N. Karssemeijer and G. Szekely. "Matching Regions for Mammographic Views: Comparison and Compensation for Deformations", in: MICCAI Workshop: Breast Image Analysis, 2011. Abstract/PDF

  10. B. Platel, H. Huisman, H. Laue, R. Mus, R. Mann, H. Hahn and N. Karssemeijer. "Computerized Characterization of Breast Lesions using Dual-Temporal Resolution Dynamic Contrast-Enhanced MR Images", in: MICCAI Workshop: Breast Image Analysis, 2011. Abstract/PDF

  11. P. Maduskar, L. Hogeweg, H. Ayles, R. Dawson, P.A. de Jong, N. Karssemeijer and B. van Ginneken. "Cavity segmentation in chest radiographs", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011. Abstract/PDF

  12. W.J.M. van de Ven, G. Litjens, J.O. Barentsz, T. Hambrock and H.J. Huisman. "Required accuracy of MR-US registration for prostate biopsies", in: Prostate Cancer Imaging. Image Analysis and Image-Guided Interventions, volume 6963 of Lecture Notes in Computer Science, 2011, pages 92-99. Abstract/PDF DOI

  13. A. Gubern-Mérida, M. Kallenberg, R. Martí and N. Karssemeijer. "Fully automatic fibroglandular tissue segmentation in breast MRI: atlas-based approach", in: MICCAI Workshop: Breast Image Analysis, 2011. Abstract/PDF

  14. C. Jacobs, K. Murphy, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Solid and Ground Glass Nodules in Thoracic CT images using two independent CAD systems", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011. Abstract/PDF

  15. D. Chong, E.M. van Rikxoort, H.J. Kim, J.G. Goldin and M.S. Brown. "Scan-rescan reproducibility of CT densitometric measures of emphysema", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 796339-1-796339-6. Abstract/PDF DOI

  16. J. Huo, E.M. van Rikxoort, K. Okada, H.J. Kim, W. Pope, J.G. Goldin and M.S. Brown. "Confidence-based ensemble for GBM brain tumor segmentation", in: Medical Imaging, volume 7962 of Proceedings of the SPIE, 2011, pages 79622P-1-79622P-6. Abstract/PDF DOI

  17. B. Lassen, J.M. Kuhnigk, E.M. van Rikxoort and H.O. Peitgen. "Interactive lung lobe segmentation and correction in tomographic images", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 79631S-1-79631S-6. Abstract/PDF DOI

  18. E.M. van Rikxoort, J.G. Goldin, M. Galperin-Aizenberg and M.S. Brown. "Classification of pulmonary emphysema from chest CT scans using integral geometry descriptors", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 79631O-1-79631O-6. Abstract/PDF DOI

  19. C. Jacobs, C.I. Sánchez, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Thoracic CT images using Shape, Intensity and Context Features", in: Medical Image Computing and Computer-Assisted Intervention, volume 6893 of Lecture Notes in Computer Science, 2011, pages 207-214. Abstract/PDF DOI PMID 22003701

  20. G. Litjens, P. Vos, J. Barentsz, N. Karssemeijer and H. Huisman. "Automatic Computer Aided Detection of Abnormalities in Multi-Parametric Prostate MRI", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011. Abstract/PDF DOI

  21. A. Gubern-Mérida, M. Kallenberg, R. Martí and N. Karssemeijer. "Multi-class probabilistic atlas-based segmentation method in breast MRI", in: Pattern Recognition and Image Analysis: proceedings of 5th Iberian Conference, volume 5, 2011. Abstract/PDF

  22. M. Niemeijer, A.V. Dumitrescu, B. van Ginneken and M.D. Abràmoff. "Automatic localization of bifurcations and vessel crossings in digital fundus photographs using location regression", in: Medical Imaging, volume 7965 of Proceedings of the SPIE, 2011, page 796507. Abstract/PDF DOI

  23. J. Lesniak, R. Hupse, M. Kallenberg, M. Samulski, R. Blanc, N. Karssemeijer and G. Székely. "Computer Aided Detection of Breast Masses in Mammography using Support Vector Machine Classification", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 79631K. Abstract/PDF DOI

  24. M. Samulski, P. Snoeren, B. Platel, B. van Ginneken, L. Hogeweg, C. Schaefer-Prokop and N. Karssemeijer. "Computer-Aided Detection as a Decision Assistant in Chest Radiography", in: Medical Imaging, volume 7966 of Proceedings of the SPIE, 2011, pages 796614-1-796614-6. Abstract/PDF

  25. G. van Schie, C. Tanner and N. Karssemeijer. "Estimating corresponding locations in ipsilateral breast tomosynthesis views", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 796306. Abstract/PDF DOI

  26. T. Tan, H. Huisman, B. Platel, A. Grivignee, R. Mus and N. Karssemeijer. "Classification of Breast Lesions in Automated 3D Breast Ultrasound", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 79630X. Abstract/PDF DOI

  27. M. Kallenberg, M. Lokate, C. van Gils and N. Karssemeijer. "Automatic breast density segmentation based on pixel classification", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 796307. Abstract/PDF DOI

  28. S. Robben, M. Velikova, P.J. Lucas and M. Samulski. "Discretisation Does Affect the Performance of Bayesian Networks", in: Research and Development in Intelligent Systems XXVII, 2011, pages 237-250. Abstract/PDF DOI

  29. P.R. Devarakota, D.M. Siddu, P. Maduskar, S. Vikal and L. Raghupathi. "Automatic lung nodule detection in thick slice CT: a comparative study of different gating schemes in CAD", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 79630E. Abstract/PDF DOI

  30. P. Maduskar, P.R. Devarakota and S. Vikal. "Automatic detection of lung vessel bifurcation in thoracic CT Images", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, page 796334. Abstract/PDF DOI

  31. D. Vukadinovic, T. van Walsum, R. Manniesing, S. Rozie, A. van der Lugt and W. Niessen. "Region Based Level Set Segmentation of the Outer Wall of the Carotid Bifurcation in CTA", in: Medical Imaging, volume 7962 of Proceedings of the SPIE, 2011, pages 79623P-1 - 79623P-8. Abstract/PDF DOI

  32. M. Radstake, M. Velikova, P. Lucas and M. Samulski. "Critiquing Knowledge Representation in Medical Image Interpretation using Structure Learning", in: Knowledge Representation for Health-Care (KR4HC), volume 6512 of Lecture Notes in Artificial Intelligence, 2011, pages 56-70.


Abstracts

  1. S. Schalekamp, B. Heggelman and C. Schaefer-Prokop. ""Focal lesions on Gadoxetate disodium enhanced and diffusionweighted liver MRI: a guidance for differential diagnosis"", in: European Congress of Radiology, 2011. PDF

  2. M.T.H. Oei, B.M. Goraj, F.J.A. Meijer, J.J. Mordang, A.J. Idema, S.H.E. Boots-Sprenger, H.O.A. Laue and M.Prokop. "Variability of relative cerebral blood volume normalization in patients with gliomas: Interobserver and intraobserver reproducibility study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2011. Abstract

  3. I. Išgum, P.A. de Jong, W. Mali, B. van Ginneken, M. Prokop and M.A. Viergever. "Automatic Coronary Calcium Scoring in Low-Dose Non-ECG-synchronized Chest Computed Tomography (CT) Scans from a Lung Cancer Screening Trial", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  4. G. Karemore, S. Brandt, N. Karssemeijer and M. Nielsen. "Discovery of Mammogram Regions That Show Early Changes Due to the Development of Breast Cancer: A Preliminary Work", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  5. N. Karssemeijer, R. Hupse, M. Samulski, D. Beijerinck, G.D. Heeten and C. Boetes. "Concurrent Interactive Use of CAD for Detection of Masses in Mammograms", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  6. N. Karssemeijer, T. Tan, B. Platel, T. Twellmann, L. Tabar, A. Grivignee, R. Mus and H. Huisman. "A Novel System for Computer-aided Lesion Classification in Automated 3D Breast Ultrasound", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract/PDF

  7. B. Platel, H. Huisman, H. Laue, R. Mann, H. Hahn, N. Karssemeijer and R. Mus. "Computerized Characterization of Breast Masses Using Dual-Temporal Resolution Dynamic Contrast-enhanced MR Images", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  8. B. Schroeder, R. Highnam, A. Cave, J. Walker, N. Karssemeijer, M. Yaffe, R. Jong and O. Alonzo-Proulx. "At What Age Should Breast Screening Begin?", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  9. L. Hogeweg, A. Story, A. Hayward, R. Aldridge, I. Abubakar, P. Maduskar and B. van Ginneken. "Computer-aided detection of tuberculosis among high risk groups: potential for automated triage", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  10. P. Maduskar, L. Hogeweg, H. Ayles, R. Dawson, P.A. de Jong and B. van Ginneken. "Automatic Size Measurement of Cavities on Chest Radiographs Using Supervised Learning and Dynamic Programming", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  11. O. Debats, T. Hambrock, G. Litjens, H. Huisman and J. Barentsz. "Detection of Lymph Node Metastases with Ferumoxtran-10 vs Ferumoxytol", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  12. G. Litjens, J.O. Barentsz, N. Karssemeijer and H. Huisman. "Zone-specific Automatic Computer-aided Detection of Prostate Cancer in MRI", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  13. M.G. Schouten, K. Nagel, T. Hambrock, C. Hoeks, G. Litjens, J. Barentsz and J. Fütterer. "Differentiation of Normal Prostate Tissue, Prostatitis, and Prostate Cancer: Correlation between Diffusion-weighted Imaging and MR-guided Biopsy", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  14. C. Jacobs, E.T. Scholten, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  15. N. Karssemeijer, T. Tan, T. Twellmann, G. van Schie, A. Grivignee, L. Tabar, R. Mann and R. Mus. "Computer Aided Interpretation of Lesions in Automated 3D Breast Ultrasound", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract/PDF

  16. S. Amin, J. Goldin, M. Zeidler, E. Kleerup, P. Lu, M. Galperin-Aizenberg, E.M. van Rikxoort, D. Gjertson and D. Ross. "Air trapping on HRCT assessed by quantitative image analysis as an early predictor of bronchiolitis obliterans syndrome in lung transplant recipients", in: American Thoracic Society International Conference, 2011. Abstract

  17. D. Chong, H. Kim, E. van Rikxoort, M. Galperin, K. Yang, Y. Jung, M. McNitt-Gray, J. Goldin and M. Brown. "Reproducibility of densitometric measures of emphysema in computed tomography scans one week apart: the effect of breathhold and scanner calibration", in: American Thoracic Society International Conference, 2011. Abstract

  18. M. Galperin-Aizenberg, E.M. van Rikxoort, M.S. Brown, H. Kim, F. Abtin and J.G. Goldin. "Automatic Fissural Integrity Quantification from Chest CT Predicts Lobar Atelectasis in Endobronchial Treatment", in: American Thoracic Society International Conference, 2011. Abstract

  19. E.M. van Rikxoort, M. Galperin-Aizenberg, C. Jude, J.G. Goldin and M. Brown. "Quantifying Emphysema From Chest Computed Tomography Scans Using Integral Geometry Descriptors: Improved Performance Over Density Measures In Low Dose Scans", in: American Thoracic Society International Conference, 2011. Abstract

  20. E.M. van Rikxoort, M.Galperin-Aizenberg, F. Abtin, H.J. Kim, P. Lu, G. Shaw, J.G. Goldin and M. Brown. "Pulmonary Fissure Integrity Assessment in Subjects with Severe Emphysema: Evaluation of a Fully Automatic Method", in: American Thoracic Society International Conference, 2011. Abstract

  21. P. Wielopolski, P. Ciet, R. Manniesing, S. Lever, M. Lequin, G. Krestin and H. Tiddens. "Automated Airway Lumen Segmentation and Characterization in Patients with Tracheomalacia: a Feasibility Study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2011. Abstract/PDF

  22. P. Ciet, P. Wielopolski, S. Lever, R. Manniesing, M. de Bruijne, M. Lequin and H. Tiddens. "MRI Tracheomalacia Assessment in Pediatric Patients: Feasibility Study", in: European Congress of Radiology, 2011. Abstract/PDF


Theses

  1. M.E.A.P.M. Adriaensen. "Imaging in tuberous sclerosis complex", PhD thesis, Utrecht University, The Netherlands, 2011. Abstract/PDF URL

  2. M. Samulski. "Computer Aided Detection as a Decision Aid in Medical Screening", PhD thesis, Radboud University Nijmegen, 2011. Abstract/PDF URL

  3. P. Vos. "Computer Aided Diagnosis of Prostate Cancer with Magnetic Resonance Imaging", PhD thesis, Radboud University Nijmegen, 2011. Abstract/PDF URL

  4. M.J. Stoutjesdijk. "Automated analysis of contrast enhancement in magnetic resonance imaging of the breast", PhD thesis, Radboud University Nijmegen, 2011. Abstract/PDF URL

  5. E. Brunenberg. "Hitting the right target : noninvasive localization of the subthalamic nucleus motor part for specific deep brain stimulation", PhD thesis, Technische Universiteit Eindhoven, 2011. Abstract/PDF URL

  6. K. Murphy. "Development and evaluation of automated image analysis techniques in thoracic CT", PhD thesis, Utrecht University, The Netherlands, 2011. Abstract/PDF URL


Other publications

  1. A. Madabhushi, J. Dowling, H. Huisman and D. Barratt. "Prostate Cancer Imaging. Image Analysis and Image-Guided Interventions", 2011. DOI

  2. R. Beichel, M. de Bruijne, B. van Ginneken, S. Kabus, A. Kiraly, J.M. Kuhnigk, J. McClelland, K. Mori, E.M. van Rikxoort and S. Rit. "The Fourth International Workshop on Pulmonary Image Analysis", 2011. Abstract/PDF URL


2010

Papers in international journals

  1. F. Ciompi, O. Pujol, C. Gatta, O. Rodriguez-Leor, J. Mauri-Ferre and P. Radeva. "Fusing in-vitro and in-vivo intravascular ultrasound data for plaque characterization", International Journal of Cardiac Imaging 2010;26:763-779. Abstract/PDF URL

  2. I.J.C. Hartmann, R. Wittenberg and C. Schaefer-Prokop. "Imaging of acute pulmonary embolism using multi-detector CT angiography: an update on imaging technique and interpretation", European Journal of Radiology 2010;74:40-49. PDF DOI PMID 20227213

  3. T. Hambrock, D.M. Somford, C. Hoeks, S.A.W. Bouwense, H. Huisman, D. Yakar, I.M. van Oort, J.A. Witjes, J.J. Fütterer and J.O. Barentsz. "Magnetic resonance imaging guided prostate biopsy in men with repeat negative biopsies and increased prostate specific antigen", Journal of Urology 2010;183:520-527. Abstract/PDF DOI PMID 20006859

  4. D. Yakar, T. Hambrock, H. Huisman, C.A. Hulsbergen-van de Kaa, E. van Lin, H. Vergunst, C.M.A. Hoeks, I.M. van Oort, J.A. Witjes, J.O. Barentsz and J.J. Fütterer. "Feasibility of 3T dynamic contrast-enhanced magnetic resonance-guided biopsy in localizing local recurrence of prostate cancer after external beam radiation therapy", Investigative Radiology 2010;45:121-125. Abstract/PDF DOI PMID 20065860

  5. M.E.A.P.M. Adriaensen, M.J.M. Cramer, M.E.E. Brouha, C.M. Schaefer-Prokop, M. Prokop, P.A.F.M. Doevendans, B.A. Zonnenberg and H.H.H. Feringa. "Echocardiographic screening results in patients with tuberous sclerosis complex", Texas Heart Institute Journal 2010;37:280-283. Abstract/PDF PMID 20548802

  6. D. Vukadinovic, T. van Walsum, R. Manniesing, S. Rozie, R. Hameeteman, T.T. de Weert, A. van der Lugt and W.J. Niessen. "Segmentation of the outer vessel wall of the common carotid artery in CTA", IEEE Transactions on Medical Imaging 2010;29:65-76. Abstract/PDF DOI PMID 19556191

  7. R. Wittenberg, J.F. Peters, J.J. Sonnemans, M. Prokop and C.M. Schaefer-Prokop. "Computer-assisted detection of pulmonary embolism: evaluation of pulmonary CT angiograms performed in an on-call setting", European Radiology 2010;20:801-806. Abstract/PDF DOI PMID 19862534

  8. J. Patel, E.E. Sigmund, H. Rusinek, M. Oei, J.S. Babb and B. Taouli. "Diagnosis of cirrhosis with intravoxel incoherent motion diffusion MRI and dynamic contrast-enhanced MRI alone and in combination: preliminary experience", Journal of Magnetic Resonance Imaging 2010;31:589-600. Abstract/PDF DOI PMID 20187201

  9. Y. Hu, R. van den Boom, T. Carter, Z. Taylor, D. Hawkes, H.U. Ahmed, M. Emberton, C. Allen and D. Barratt. "A comparison of the accuracy of statistical models of prostate motion trained using data from biomechanical simulations", Progress in Biophysics and Molecular Biology 2010;103:262-272. Abstract/PDF DOI PMID 20869389

  10. M.A.J.M. Lokate, M.G.J. Kallenberg, N. Karssemeijer, M.A.A.J. van den Bosch, P.H.M. Peeters and C.H. van Gils. "Volumetric breast density from full-field digital mammograms and its association with breast cancer risk factors: a comparison with a threshold method", Cancer Epidemiology Biomarkers and Prevention 2010;19:3096-3105. Abstract/PDF DOI PMID 20921336

  11. D.F. Stegeman, W.J.M. van de Ven, G.A. van Elswijk, R. Oostenveld and B.U. Kleine. "The alpha-motoneuron pool as transmitter of rhythmicities in cortical motor drive", Clinical Neurophysiology 2010;121:1633-1642. Abstract/PDF DOI PMID 20434397

  12. R. Manniesing, M. Schaap, S. Rozie, R. Hameeteman, D. Vukadinovic, A. van der Lugt and W. Niessen. "Robust CTA lumen segmentation of the atherosclerotic carotid artery bifurcation in a large patient population", Medical Image Analysis 2010;14:759-769. Abstract/PDF DOI PMID 20605737

  13. B. de Hoop, D.W. de Boo, H.A. Gietema, F. van Hoorn, B. Mearadji, L. Schijf, B. van Ginneken, M. Prokop and C. Schaefer-Prokop. "Computer-aided Detection of Lung Cancer on Chest Radiographs: Effect on Observer Performance", Radiology 2010;257:532-540. Abstract/PDF DOI PMID 20807851

  14. M. Samulski, R. Hupse, C. Boetes, R. Mus, G. den Heeten and N. Karssemeijer. "Using Computer Aided Detection in Mammography as a Decision Support", European Radiology 2010;20:2323-2330. Abstract/PDF DOI PMID 20532890

  15. A.M.J. Bluekens, N. Karssemeijer, D. Beijerinck, J.J.M. Deurenberg, R.E. van Engen, M.J.M. Broeders and G.J. den Heeten. "Consequences of digital mammography in population-based breast cancer screening: initial changes and long-term impact on referral rates", European Radiology 2010;20:2067-2073. Abstract/PDF DOI PMID 20407901

  16. S. Timp, C. Varela and N. Karssemeijer. "Computer-aided diagnosis with temporal analysis to improve radiologists' interpretation of mammographic mass lesions", IEEE Transactions on Information Technology in Biomedicine 2010;14:803-808. Abstract/PDF DOI PMID 20403792

  17. B. van Ginneken, S.G. Armato, B. de Hoop, S. van de Vorst, T. Duindam, M. Niemeijer, K. Murphy, A.M.R. Schilham, A. Retico, M.E. Fantacci, N. Camarlinghi, F. Bagagli, I. Gori, T. Hara, H. Fujita, G. Gargano, R. Belloti, F.D. Carlo, R. Megna, S. Tangaro, L. Bolanos, P. Cerello, S.C. Cheran, E.L. Torres and M. Prokop. "Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: the ANODE09 study", Medical Image Analysis 2010;14:707-722. Abstract/PDF DOI PMID 20573538

  18. A. Mendrik, E. Vonken, B. van Ginneken, E.J. Smit, A. Waaijer, G. Bertolini, M.A. Viergever and M. Prokop. "Automatic segmentation of intracranial arteries and veins in four-dimensional cerebral CT perfusion scans", Medical Physics 2010;37:2956-2966. Abstract/PDF DOI PMID 20632608

  19. H.A. Gietema, P. Zanen, A.M.R. Schilham, B. van Ginneken, R.J. van Klaveren, M. Prokop and J.W.J. Lammers. "Reply to Hochheggar et al", Respiratory Medicine 2010;104:1074. PDF DOI

  20. E.M. van Rikxoort, M. Prokop, B. de Hoop, M. Viergever, J. Pluim and B. van Ginneken. "Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures", IEEE Transactions on Medical Imaging 2010;29:1286-1296. Abstract/PDF DOI PMID 20304724

  21. P.C.A. Jacobs, I. Išgum, M.J.A. Gondrie, W.P.T.M. Mali, B. van Ginneken, M. Prokop and Y. der Graaf. "Coronary artery calcification scoring in low-dose ungated CT screening for lung cancer: interscan agreement", American Journal of Roentgenology 2010;194:1244-1249. Abstract/PDF DOI PMID 20410410

  22. P.C. Jacobs, M. Prokop, Y. van der Graaf, M.J. Gondrie, K.J. Janssen, H.J. de Koning, I. Išgum, R.J. van Klaveren, M. Oudkerk, B. van Ginneken and W.P. Mali. "Comparing coronary artery calcium and thoracic aorta calcium for prediction of all-cause mortality and cardiovascular events on low-dose non-gated computed tomography in a high-risk population of heavy smokers", Atherosclerosis 2010;209:455-462. Abstract/PDF DOI PMID 19875116

  23. R. Hupse and N. Karssemeijer. "The effect of feature selection methods on computer-aided detection of masses in mammograms", Physics in Medicine and Biology 2010;55:2893-2904. Abstract/PDF DOI PMID 20427855

  24. B. de Hoop, C.M. Schaefer-Prokop, H.A. Gietema, P.A. de Jong, B. van Ginneken, R.J. van Klaveren and M. Prokop. "Screening for lung cancer with digital chest radiography: sensitivity and number of secondary work-up CT examinations", Radiology 2010;255:629-637. Abstract/PDF DOI PMID 20413773

  25. B. de Hoop, H. Gietema, S. van de Vorst, K. Murphy, R.J. van Klaveren and M. Prokop. "Pulmonary ground-glass nodules: increase in mass as an early indicator of growth", Radiology 2010;255:199-206. Abstract/PDF DOI PMID 20123896

  26. Y. Arzhaeva, M. Prokop, K. Murphy, E.M. van Rikxoort, P.A. de Jong, H.A. Gietema, M.A. Viergever and B. van Ginneken. "Automated estimation of progression of interstitial lung disease in CT images", Medical Physics 2010;37:63-73. Abstract/PDF DOI PMID 20175467

  27. H.A. Gietema, P. Zanen, A. Schilham, B. van Ginneken, R.J. van Klaveren, M. Prokop and J.W. Lammers. "Distribution of emphysema in heavy smokers: impact on pulmonary function", Respiratory Medicine 2010;104:76-82. Abstract/PDF DOI PMID 19734030

  28. I. Išgum, A. Rutten, M. Prokop, M.Staring, S. Klein, J.P.W. Pluim, M.A. Viergever and B. van Ginneken. "Automated aortic calcium scoring on low-dose chest computed tomography", Medical Physics 2010;37:714-723. Abstract/PDF DOI PMID 20229881

  29. M. Niemeijer, B. van Ginneken, M.J. Cree, A. Mizutani, G. Quellec, C.I. Sánchez, B. Zhang, R. Hornero, M. Lamard, C. Muramatsu, X. Wu, G. Cazuguel, J. You, A. Mayo, Q. Li, Y. Hatanaka, B. Cochener, C. Roux, F. Karray, M. Garcia, H. Fujita and M.D. Abràmoff. "Retinopathy online challenge: automatic detection of microaneurysms in digital color fundus photographs", IEEE Transactions on Medical Imaging 2010;29:185-195. Abstract/PDF DOI PMID 19822469

  30. E.M. van Rikxoort, I. Išgum, Y. Arzhaeva, M. Staring, S. Klein, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Adaptive local multi-atlas segmentation: application to the heart and the caudate nucleus", Medical Image Analysis 2010;14:39-49. Abstract/PDF DOI PMID 19897403

  31. E. Tanck, J.C.W. Deenen, H.J. Huisman, J.G. Kooloos, H. Huizenga and N. Verdonschot. "An anatomically shaped lower body model for CT scanning of cadaver femurs", Physics in Medicine and Biology 2010;55:N57-N62. Abstract/PDF DOI PMID 20023325

  32. P.C. Vos, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Computer-assisted analysis of peripheral zone prostate lesions using T2-weighted and dynamic contrast enhanced T1-weighted MRI", Physics in Medicine and Biology 2010;55:1719-1734. Abstract/PDF DOI PMID 20197602


Papers in conference proceedings

  1. F. Ciompi, O. Pujol and P. Radeva. "A meta-learning approach to conditional random fields using error-correcting output codes", in: International Conference on Pattern Recognition, 2010, pages 710-713. Abstract/PDF URL

  2. C. Gatta, S. Balocco, F. Ciompi, R. Hemetsberger, O.R. Leor and P. Radeva. "Real-time gating of IVUS sequences based on motion blur analysis: method and quantitative validation", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2010, pages 59-67. Abstract/PDF URL

  3. J. Seabra, J. Sanches, F. Ciompi and P. Radeva. "Ultrasonographic plaque characterization using a rayleigh mixture model", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 1-4. Abstract/PDF URL

  4. C. Jacobs, K. Ma, P. Moin and B. Liu. "An automatic quantification system for MS lesions with integrated DICOM structured reporting (DICOM-SR) for implementation within a clinical environment", in: Medical Imaging, volume 7628 of Proceedings of the SPIE, 2010, pages 76280K-76280K-8. Abstract/PDF DOI

  5. A.H. Le, Y.W. Park, K. Ma, C. Jacobs and B.J. Liu. "Performance evaluation for volumetric segmentation of multiple sclerosis lesions using MATLAB and computing engine in the graphical processing unit (GPU)", in: Medical Imaging, volume 7628 of Proceedings of the SPIE, 2010, pages 76280W-76280W-6. Abstract/PDF DOI

  6. K. Ma, C. Jacobs, J. Fernandez, L. Amezcua and B. Liu. "The development of a disease oriented eFolder for multiple sclerosis decision support", in: Medical Imaging, volume 7628 of Proceedings of the SPIE, 2010, pages 76280G-76280G-7. Abstract/PDF DOI

  7. E. Brunenberg, R. Duits, B.M. ter Haar Romeny and B. Platel. "A Sobolev norm based distance measure for HARDI clustering: a feasibility study on phantom and real data", in: Medical Image Computing and Computer-Assisted Intervention, volume 13 of Lecture Notes in Computer Science, 2010, pages 175-182. Abstract/PDF PMID 20879229

  8. G. Litjens, L. Hogeweg, A. Schilham, P. de Jong, M. Viergever and B. van Ginneken. "Simulation of nodules and diffuse infiltrates in chest radiographs using CT templates", in: Medical Image Computing and Computer-Assisted Intervention, volume 6362 of Lecture Notes in Computer Science, 2010, pages 396-403. Abstract/PDF DOI PMID 20879340

  9. A. Firouzian, R. Manniesing, H. Flach, R. Risselada, F. van Kooten, M. Sturkenboom, A. van der Lugt and W. Niessen. "Intracranial Aneurysm Segmentation in 3D CT Angiography: Method and Quantitative Validation", in: Medical Imaging, volume 7623 of Proceedings of the SPIE, 2010, pages 76233M-1-76233M-8. Abstract/PDF DOI

  10. S.E.A. Muenzing, B. van Ginneken and J.P.W. Pluim. "Knowledge Driven Regularization of the Deformation Field for PDE Based Non-Rigid Registration Algorithms", in: Medical Image Analysis for the Clinic - A Grand Challenge, 2010, pages 127-136. Abstract/PDF

  11. K. Murphy, B. van Ginneken, J.M. Reinhardt, S. Kabus, K. Ding, X. Deng and J.P.W. Pluim. "Evaluation of Methods for Pulmonary Image Registration: The EMPIRE10 Study", in: Medical Image Analysis for the Clinic - A Grand Challenge, 2010, pages 11-22. Abstract/PDF

  12. M. Velikova, P.J.F. Lucas and N. Karssemeijer. "Using local context information to improve automatic mammographic mass detection", in: Studies in Health Technology and Informatics, volume 160 of MEDINFO 2010 - Proceedings of the 13th World Congress on Medical Informatics, 2010, pages 1291-1295. Abstract/PDF DOI PMID 20841893

  13. E. van Rikxoort, M. Galperin-Aizenberg, J.G. Goldin, T.T.J.P. Kockelkorn, B. van Ginneken and M.S. Brown. "Multi-classifier semi-supervised classification of tuberculosis patterns on chest CT scans", in: The Third International Workshop on Pulmonary Image Analysis, 2010, pages 41-48. Abstract/PDF

  14. P.R. Snoeren, G. Litjens, B. van Ginneken and N. Karssemeijer. "Training a Computer Aided Detection System with Simulated Lung Nodules in Chest Radiographs", in: The Third International Workshop on Pulmonary Image Analysis, 2010, pages 139-149. Abstract/PDF

  15. O.A. Debats, N. Karssemeijer, J.O. Barentsz and H.J. Huisman. "Automated classification of lymph nodes in USPIO-enhanced MR-images: a comparison of three segmentation methods", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, page 76240Q. Abstract/PDF DOI

  16. G. van Schie, M.G.W.K. Leifland, E. Moa, M. Hemmendorff and N. Karssemeijer. "The Effect of Slab Size on Mass Detection Performance of a Screen-Film CAD System in Reconstructed Tomosynthesis Volumes", in: IWDM '10: Proceedings of the 10th international workshop on Digital Mammography, 2010, pages 497-504. Abstract/PDF DOI

  17. H. Huisman, P. Vos, G. Litjens, T. Hambrock and J. Barentsz. "Computer aided detection of prostate cancer using t2w, DWI and DCE-MRI: methods and clinical applications", in: MICCAI Workshop: Prostate Cancer Imaging: Computer Aided Diagnosis, Prognosis, and Intervention, 2010. Abstract/PDF

  18. E.J. Smit, J. Dankbaar, A.M. Mendrik, B. van Ginneken, E. Vonken and M. Prokop. "Reconstruction of High Quality CT Angiography from Noisy Cerebral CT Perfusion Data", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  19. C.I. Sánchez, M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Active learning for an efficient training strategy of computer-aided diagnosis systems: application to diabetic retinopathy screening", in: Medical Image Computing and Computer-Assisted Intervention, volume 6363 of Lecture Notes in Computer Science, 2010, pages 603-610. Abstract/PDF DOI PMID 20879450

  20. L. Hogeweg, C. Mol, P.A. de Jong, R. Dawson, H. Ayles and B. van Ginneken. "Fusion of local and global detection systems to detect tuberculosis in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 6363 of Lecture Notes in Computer Science, 2010, pages 650-657. Abstract/PDF DOI PMID 20879456

  21. A. Makarau, H. Huisman, R. Mus, M. Zijp and N. Karssemeijer. "Breast MRI intensity non-uniformity correction using mean-shift", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, page 76242D. Abstract/PDF DOI

  22. M.G.J. Kallenberg and N. Karssemeijer. "Comparison of Tilt Correction Methods in Full Field Digital Mammograms", in: IWDM '10: Proceedings of the 10th international workshop on Digital Mammography, 2010, pages 191-196. Abstract/PDF DOI

  23. L. Hogeweg, C. Mol, P.A. de Jong and B. van Ginneken. "Rib suppression in chest radiographs to improve classification of textural abnormalities", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240Y1-76240Y6. Abstract/PDF DOI

  24. I. Išgum, M. Prokop, P.C. Jacobs, M.J. Gondrie, W.P.T.M. Mali, M.A. Viergever and B. van Ginneken. "Automatic coronary calcium scoring in low-dose non-ECG-synchronized thoracic CT scans", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240M1-76240M8. Abstract/PDF DOI

  25. A. Mendrik, E.P.A. Vonken, J.W. Dankbaar, M. Prokop and B. van Ginneken. "Noise filtering in thin-slice 4D cerebral CT perfusion scans", in: Medical Imaging, volume 7623 of Proceedings of the SPIE, 2010, pages 76230N1-76230N8. Abstract/PDF DOI

  26. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic determination of the artery vein ratio in retinal images", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240I1-76240I10. Abstract/PDF DOI

  27. E. van Dongen and B. van Ginneken. "Automatic segmentation of pulmonary vasculature in thoracic CT scans with local thresholding and airway wall removal", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 668-671. Abstract/PDF DOI

  28. B. van Ginneken. "Computer-aided diagnosis in chest imaging: how to improve performance and avoid reinventing the wheel", in: IEEE International Symposium on Biomedical Imaging, 2010, page 274. PDF DOI

  29. N. Karssemeijer. "Computer aided detection in breast imaging: more than perception aid", in: IEEE International Symposium on Biomedical Imaging, 2010, page 273. PDF DOI

  30. T.T.J.P. Kockelkorn, P.A. de Jong, H.A. Gietema, J.C. Grutters, M. Prokop and B. van Ginneken. "Interactive annotation of textures in thoracic CT scans", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240X1-76240X8. Abstract/PDF DOI

  31. T.T.J.P. Kockelkorn, E.M. van Rikxoort, J.C. Grutters and B. van Ginneken. "Interactive lung segmentation in CT scans with severe abnormalities", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 564-567. Abstract/PDF DOI

  32. G. Litjens, M. Heisen, J. Buurman and B. ter Haar Romeny. "Pharmacokinetic models in clinical practice: what model to use for DCE-MRI of the breast?", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 185-188. Abstract/PDF

  33. P. Lo, B. van Ginneken and M. de Bruijne. "Vessel tree extraction using locally optimal paths", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 680-683. Abstract/PDF DOI

  34. E.M. van Rikxoort, J.G. Goldin, B. van Ginneken, M. Galperin-Aizenberg, C. Ni and M.S. Brown. "Interactively learning a patient specific k-nearest neighbor classifier based on confidence weighted samples", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 556-559. Abstract/PDF DOI

  35. C.I. Sánchez, M. Niemeijer, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Improving hard exudate detection in retinal images through a combination of local and contextual information", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 5-8. Abstract/PDF DOI


Abstracts

  1. J.P. van Dijk, W.J.M. van de Ven and D.F. Stegeman. "Evaluating the motor unit number index (MUNIX) as a measure for motor unit loss", in: International Society of Electrophysiology and Kinesiology, 2010. Abstract

  2. W.J.M. van de Ven, J.P. van Basten, B.J. de Kruif, P. Dunias and F.P. Wieringa. "[Broad spectrum in vivo diffuse spectrometry - An exploration for improvements to the distinction of the neurovasular bundle during robot prostatectomy (RALP)]", in: Nederlands Tijdschrift voor Urologie, 2010. Abstract

  3. W.J.M. van de Ven, B.U. Kleine, G.A. van Elswijk, R. Oostenveld and D.F. Stegeman. "The alpha-motoneuron pool as transmitter of rhythmicities in cortical motor drive", in: International Society of Electrophysiology and Kinesiology, 2010. Abstract

  4. M.S. Dinesh, L. Raghupathi, P. Devarakota, P. Maduskar, M. Salganicoff and L. Bogoni. "Thick-slice lung nodule detection: CAD prototype performance evaluation", in: European Congress of Radiology, 2010. Abstract

  5. J. van Kuijk, R. Manniesing, D. Goei, Y.R.B.M. van Gestel, S.E. Hoeks, M. Koek, J.J. Hermans, W. Niessen, H. Verhagen and D. Poldermans. "Automatic Quantication of Abdominal Visceral Fat Content: a True Marker for Metabolic Syndrome?", in: European Society of Cardiology, 2010. Abstract/PDF

  6. R. Manniesing, M. Koek, D. Goei, J. Hermans, W. Niessen and D. Poldermans. "Fully Automated Abdominal Fat Quantification using 3D Computed Tomography Angiography", in: European Congress of Radiology, 2010. Abstract/PDF

  7. P. Wielopolski, P. Ciet, G. Krestin, M. Lequin, H. Tiddens and R. Manniesing. "Automated airway lumen segmentation and characterization for use in patients with tracheomalacya: a feasibility study", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2010. Abstract/PDF

  8. P.C. Vos, J.J. Fütterer, N. Karssemeijer and J.O.B.H. Huisman. "Computer-assisted Diagnosis of Prostate Cancer with Multimodal3T MR Imaging", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  9. H. Huisman, J. Veltman, M. Zijp, R. Mann, R. Mus and N. Karssemeijer. "Dual-Time Resolution Characterization of Masses on Breast DCEMR", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  10. C. Mol, B. van Ginneken, M. de Bruijne, P.A. de Jong, M. Oudkerk, A. Dirksen and P. Zanen. "Correction of Quantitative Emphysema Measures with Density Calibration Based on Measurements in the Trachea", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  11. L. Hogeweg, C. Mol, P.A. de Jong, H. Ayles, R. Dawson and B. van Ginneken. "Evaluation of a computer aided detection system for tuberculosis on chest radiographs in a high-burden setting", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract


Theses

  1. A.M. Mendrik. "Noise Reduction and Vascular Enhancement in 4D CT Perfusion Scans", PhD thesis, Utrecht University, The Netherlands, 2010. Abstract/PDF URL

  2. A. Gubern-Mérida. "Multi-class probabilistic atlas-based segmentation method in breast MRI", Masters thesis, Universitat de Girona / Radboud University Nijmegen, 2010. PDF

  3. B. de Hoop. "Lung Cancer Screening: Radiological Aspects", PhD thesis, Utrecht University, The Netherlands, 2010. Abstract/PDF URL


Other publications

  1. N. Karssemeijer and P.R. Snoeren. "Image Processing", 2010. Abstract/PDF URL

  2. B. van Ginneken, K. Murphy, T. Heimann, V. Pekar and X. Deng. "Medical Image Analysis for the Clinic: a Grand Challenge", 2010. Abstract/PDF URL

  3. M. Velikova, N. Ferreira, M. Samulski, P. Lucas and N. Karssemeijer. "An Advanced Probabilistic Framework for Assisting Screening Mammogram Interpretation", 2010. Abstract/PDF DOI

  4. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, K. Mori and J. Reinhardt. "The Third International Workshop on Pulmonary Image Analysis", 2010. Abstract/PDF URL


2009

Papers in international journals

  1. M.F. Demirci, B. Platel, A. Shokoufandeh, L.L. Florack and S.J. Dickinson. "The Representation and Matching of Images Using Top Points", Journal of Mathematical Imaging and Vision 2009;35:103-116. Abstract/PDF DOI

  2. R. Brecheisen, B. Platel, A. Vilanova and B.M. ter Haar Romeny. "Parameter sensitivity visualization for DTI fiber tracking", IEEE Transactions on Visualization and Computer Graphics 2009;15:1441-1448. Abstract/PDF DOI PMID 19834219

  3. M.E.A.P.M. Adriaensen, C.M. Schaefer-Prokop, D.A.C. Duyndam, B.A. Zonnenberg and M. Prokop. "Fatty foci in the myocardium in patients with tuberous sclerosis complex: common finding at CT", Radiology 2009;253:359-363. Abstract/PDF DOI PMID 19709996

  4. M.E.A.P.M. Adriaensen, C.M. Schaefer-Prokop, T. Stijnen, D.A.C. Duyndam, B.A. Zonnenberg and M. Prokop. "Prevalence of subependymal giant cell tumors in patients with tuberous sclerosis and a review of the literature", European Journal of Neurology 2009;16:691-696. Abstract/PDF DOI PMID 19236458

  5. C.M. Schaefer-Prokop, D.W.D. Boo, M. Uffmann and M. Prokop. "DR and CR: Recent advances in technology", European Journal of Radiology 2009;72:194-201. Abstract/PDF DOI PMID 19695809

  6. D.O. Mook-Kanamori, S. Holzhauer, L.M. Hollestein, B. Durmus, R. Manniesing, M. Koek, G. Boehm, E.M. van der Beek, A. Hofman, J.C.M. Witteman, M.H. Lequin and V.W.V. Jaddoe. "Abdominal fat in children measured by ultrasound and computed tomography", Ultrasound in Medicine and Biology 2009;35:1938-1946. Abstract/PDF DOI PMID 19800165

  7. E. Rollano-Hijarrubia, R. Manniesing and W. Niessen. "Selective deblurring for improved calcification visualization and quantification in carotid CT angiography: validation using micro-CT", IEEE Transactions on Medical Imaging 2009;28:446-453. Abstract/PDF DOI PMID 19244016

  8. M. García, C.I. Sánchez, M.I. López, D. Abásolo and R. Hornero. "Neural network based detection of hard exudates in retinal images", Computer Methods and Programs in Biomedicine 2009;93(1):9-19. Abstract/PDF DOI PMID 18778869

  9. M. García, C.I. Sánchez, J. Poza, M.I. López and R. Hornero. "Detection of hard exudates in retinal images using a radial basis function classifier", Annals of Biomedical Engineering 2009;37(7):1448-1463. Abstract/PDF DOI PMID 19430906

  10. C.I. Sánchez, M. García, A. Mayo, M.I. López and R. Hornero. "Retinal image analysis based on mixture models to detect hard exudates", Medical Image Analysis 2009;13(4):650-658. Abstract/PDF DOI PMID 19539518

  11. X. Artaechevarria, D. Pérez-Martin, M. Ceresa, G. de Biurrun, D. Blanco, L.M. Montuenga, B. van Ginneken, C.O. de Solórzano and A. Muñoz-Barrutia. "Airway segmentation and analysis for the study of mouse models of lung disease using micro-CT", Physics in Medicine and Biology 2009;54:7009-7024. Abstract/PDF DOI PMID 19887716

  12. B. van Ginneken, L. Hogeweg and M. Prokop. "Computer-aided diagnosis in chest radiography: beyond nodules", European Journal of Radiology 2009;72:226-230. Abstract/PDF DOI PMID 19604661

  13. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Fast detection of the optic disc and fovea in color fundus photographs", Medical Image Analysis 2009;13(6):859-870. Abstract/PDF DOI PMID 19782633

  14. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Information fusion for diabetic retinopathy CAD in digital color fundus photographs", IEEE Transactions on Medical Imaging 2009;28(5):775-785. Abstract/PDF DOI PMID 19150786

  15. C.M.A. Hoeks, J.J. Fütterer, D.M. Somford, I.M. van Oort, H. Huisman and J.O. Barentsz. "Multiparametric MRI for prostate cancer screening", Nederlands Tijdschrift voor Geneeskunde 2009;153:B487. Abstract/PDF PMID 20003566

  16. C.G. van Niekerk, J.A.W.M. van der Laak, M.E. Börger, H. Huisman, J.A. Witjes, J.O. Barentsz and C.A. Hulsbergen-van de Kaa. "Computerized whole slide quantification shows increased microvascular density in pT2 prostate cancer as compared to normal prostate tissue", Prostate 2009;69:62-69. Abstract/PDF DOI PMID 18780292

  17. M. Nillesen, R. Lopata, W. de Boode, I. Gerrits, H. Huisman, J. Thijssen, L. Kapusta and C. de Korte. "In vivo validation of cardiac output assessment in non-standard 3D echocardiographic images", Physics in Medicine and Biology 2009;54:1951-1962. Abstract/PDF DOI PMID 19265202

  18. R. Hupse and N. Karssemeijer. "Use of normal tissue context in computer-aided detection of masses in mammograms", IEEE Transactions on Medical Imaging 2009;28:2033-2041. Abstract/PDF DOI PMID 19666331

  19. J.E. Iglesias and N. Karssemeijer. "Robust initial detection of landmarks in film-screen mammograms using multiple FFDM atlases", IEEE Transactions on Medical Imaging 2009;28:1815-1824. Abstract/PDF DOI PMID 19520632

  20. N. Karssemeijer, A.M. Bluekens, D. Beijerinck, J.J. Deurenberg, M. Beekman, R. Visser, R. van Engen, A. Bartels-Kortland and M.J. Broeders. "Breast cancer screening results 5 years after introduction of digital mammography in a population-based screening program", Radiology 2009;253:353-358. Abstract/PDF DOI PMID 19703851

  21. M. Velikova, M. Samulski, P.J.F. Lucas and N. Karssemeijer. "Improved mammographic CAD performance using multi-view information: a Bayesian network framework", Physics in Medicine and Biology 2009;54:1131-1147. Abstract/PDF DOI PMID 19174596

  22. D.W. de Boo, M. Prokop, M. Uffmann, B. van Ginneken and C.M. Schaefer-Prokop. "Computer-aided detection (CAD) of lung nodules and small tumours on chest radiographs", European Journal of Radiology 2009;72:218-225. Abstract/PDF DOI PMID 19747791

  23. A.M. Mendrik, E.-J. Vonken, A. Rutten, M.A. Viergever and B. van Ginneken. "Noise reduction in computed tomography scans using 3-d anisotropic hybrid diffusion with continuous switch", IEEE Transactions on Medical Imaging 2009;28:1585-1594. Abstract/PDF DOI PMID 19783496

  24. E.M. van Rikxoort, B. de Hoop, M.A. Viergever, M. Prokop and B. van Ginneken. "Automatic lung segmentation from thoracic computed tomography scans using a hybrid approach with error detection", Medical Physics 2009;36:2934-2947. Abstract/PDF DOI PMID 19673192

  25. K. Murphy, B. van Ginneken, A.M.R. Schilham, B.J. de Hoop, H.A. Gietema and M. Prokop. "A Large Scale Evaluation of Automatic Pulmonary Nodule Detection in Chest CT using Local Image Features and k-Nearest-Neighbour Classification", Medical Image Analysis 2009;13(5):757-770. Abstract/PDF DOI PMID 19646913

  26. T. Heimann, B. van Ginneken, M. Styner, Y. Arzhaeva, V. Aurich, C. Bauer, A. Beck, C. Becker, R. Beichel, G. Bekes, F. Bello, G. Binnig, H. Bischof, A. Bornik, P. Cashman, Y. Chi, A. Cordova, B. Dawant, M. Fidrich, J. Furst, D. Furukawa, L. Grenacher, J. Hornegger, D. Kainmuller, R. Kitney, H. Kobatake, H. Lamecker, T. Lange, J. Lee, B. Lennon, R. Li, S. Li, H.-P. Meinzer, G. Nemeth, D. Raicu, A.-M. Rau, E. van Rikxoort, M. Rousson, L. Rusko, K. Saddi, G. Schmidt, D. Seghers, A. Shimizu, P. Slagmolen, E. Sorantin, G. Soza, R. Susomboon, J. Waite, A. Wimmer and I. Wolf. "Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets", IEEE Transactions on Medical Imaging 2009;28:1251-1265. Abstract/PDF DOI PMID 19211338

  27. Y. Arzhaeva, D.M.J. Tax and B. van Ginneken. "Dissimilarity-based classification in the absence of local ground truth: application to the diagnostic interpretation of chest radiographs", Pattern Recognition 2009;42:1768-1776. Abstract/PDF DOI

  28. B. de Hoop, H. Gietema, B. van Ginneken, P. Zanen, G. Groenewegen and M. Prokop. "A comparison of six software packages for evaluation of solid lung nodules using semi-automated volumetry: what is the minimum increase in size to detect growth in repeated CT examinations", European Radiology 2009;19:800-808. Abstract/PDF DOI PMID 19018537

  29. I. Išgum, M. Staring, A. Rutten, M. Prokop, M. Viergever and B. van Ginneken. "Multi-Atlas-Based Segmentation With Local Decision Fusion - Application to Cardiac and Aortic Segmentation in CT Scans", IEEE Transactions on Medical Imaging 2009;28:1000-1010. Abstract/PDF DOI PMID 19131298

  30. M. Staring, J.P.W. Pluim, B.J. de Hoop, S. Klein, B. van Ginneken, H. Gietema, G. Nossent, C.M. Schaefer-Prokop, S. van de Vorst and M. Prokop. "Image Subtraction Facilitates Assessment of Volume and Density Change in Ground-Glass Opacities in Chest CT", Investigative Radiology 2009;44:61-66. Abstract/PDF DOI PMID 19104438

  31. E.M. van Rikxoort, B. de Hoop, S. van de Vorst, M. Prokop and B. van Ginneken. "Automatic segmentation of pulmonary segments from volumetric chest CT scans", IEEE Transactions on Medical Imaging 2009;28:621-630. Abstract/PDF DOI PMID 19211346


Papers in conference proceedings

  1. F. Ciompi, O. Pujol, E. Fernandez-Nofrerias, J. Mauri and P. Radeva. "Ecoc random fields for lumen segmentation in radial artery ivus sequences", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, pages 869-876. Abstract/PDF URL

  2. F. Ciompi, O. Pujol, O.R. Leor, C. Gatta, A.S. Vida and P. Radeva. "Enhancing in-vitro IVUS data for tissue characterization", in: Pattern Recognition and Image Analysis, 2009, pages 241-248. Abstract/PDF URL

  3. C. Gatta, J.D.G. Valencia, F. Ciompi, O.R. Leor and P. Radeva. "Toward robust myocardial blush grade estimation in contrast angiography", in: Pattern Recognition and Image Analysis, 2009, pages 249-256. URL

  4. D. Vukadinovic, T. van Walsum, S. Rozie, T. de Weert, R. Manniesing, A. van der Lugt and W. Niessen. "Carotid artery segmentation and plaque quantification in CTA", in: Proc. IEEE Int. Symp. Biomedical Imaging: From Nano to Macro ISBI '09, 2009, pages 835-838. Abstract/PDF DOI

  5. R. Reinartz, B. Platel, T. Boselie, H. van Mameren, H. van Santbrink and B.M. ter Haar Romeny. "Cervical vertebrae tracking in video-fluoroscopy using the normalized gradient field", in: Medical Image Computing and Computer-Assisted Intervention, volume 12 of Lecture Notes in Computer Science, 2009, pages 524-531. Abstract/PDF PMID 20426028

  6. A. Mendrik, E.P.A. Vonken, A. Waaijer, E. Smit, M. Prokop and B. van Ginneken. "Segmentation of arteries and veins on 4D CT perfusion scans for constructing arteriograms and venograms", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72590Z1-72590Z7. Abstract/PDF DOI

  7. P. Maduskar and M. Acharyya. "Automatic identification of intracranial hemorrhage in non-contrast CT with large slice thickness for trauma cases", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 726011.1-726011.8. Abstract/PDF DOI

  8. P. Lo, B. van Ginneken, J.M. Reinhardt and M. de Bruijne. "Extraction of Airways from CT (EXACT09)", in: The Second International Workshop On Pulmonary Image Analysis, 2009, pages 175-189. Abstract/PDF

  9. G. van Schie and N. Karssemeijer. "Noise model for microcalcification detection in reconstructed tomosynthesis slices", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, page 72600M. Abstract/PDF DOI

  10. P.C. Vos, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Automated calibration for computerized analysis of prostate lesions using pharmacokinetic magnetic resonance images", in: Medical Image Computing and Computer-Assisted Intervention, volume 12 of Lecture Notes in Computer Science, 2009, pages 836-843. Abstract/PDF PMID 20426189

  11. M. Niemeijer, M.K. Garvin, K. Lee, M. Sonka, B. van Ginneken and M.D. Abràmoff. "Automated Segmentation of the Retinal Vasculature Silhouettes in Isotropic 3D Optical Coherence Tomography Scans", in: Association for Research in Vision and Ophthalmology, 2009. Abstract

  12. M. Nillesen, R. Lopata, H. Huisman, J. Thijssen, L. Kapusta and C. de Korte. "3D cardiac segmentation using temporal correlation of radio frequency ultrasound data", in: Medical Image Computing and Computer-Assisted Intervention, volume 12 of Lecture Notes in Computer Science, 2009, pages 927-934. Abstract/PDF DOI PMID 20426200

  13. X. Artaechevarria, A. Muñoz-Barrutia, B. van Ginneken and C.O. de Solórzano. "Fast murine airway segmentation and reconstruction in micro-CT images", in: Medical Imaging, volume 7262 of Proceedings of the SPIE, 2009, pages 72620B1-72620B8. Abstract/PDF DOI

  14. S. Kabus, T. Klinder, K. Murphy, B. van Ginneken, C. Lorenz and J.P.W. Pluim. "Evaluation of 4D-CT Lung Registration", in: Medical Image Computing and Computer-Assisted Intervention, volume 5761 of Lecture Notes in Computer Science, 2009, pages 747-754. Abstract/PDF DOI

  15. S.E.A. Muenzing, K. Murphy, B. van Ginneken and J.P.W. Pluim. "Automatic detection of registration errors for quality assessment in medical image registration", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72590K1-72590K9. Abstract/PDF DOI

  16. M.G.J. Kallenberg and N. Karssemeijer. "Using Volumetric Density Estimation in Computer Aided Mass Detection in Mammography", in: Proceedings of SPIE -- Volume 7263, Medical Imaging 2009: Computer-Aided Diagnosis, volume 7263, 2009, page 72600T. Abstract/PDF DOI

  17. E. van Rikxoort, W. Baggerman and B. van Ginneken. "Automatic segmentation of the airway tree from thoracic CT scans using a multi-threshold approach", in: The Second International Workshop on Pulmonary Image Analysis, 2009, pages 341-349. Abstract/PDF

  18. M. Samulski, A. Hupse, C. Boetes, G. den Heeten and N. Karssemeijer. "Analysis of probed regions in an interactive CAD system for the detection of masses in mammograms", in: Medical Imaging, volume 7263 of Proceedings of the SPIE, 2009, page 726314. Abstract/PDF DOI

  19. M. Velikova, M. Samulski, P.J. Lucas and N. Karssemeijer. "Causal Probabilistic Modelling for Two-View Mammographic Analysis", in: AIME '09: Proceedings of the 12th Conference on Artificial Intelligence in Medicine, 2009, pages 395-404. Abstract/PDF DOI

  20. Y. Arzhaeva, L. Hogeweg, P.A. de Jong, M.A. Viergever and B. van Ginneken. "Global and Local Multi-valued Dissimilarity-Based Classification: Application to Computer-Aided Detection of Tuberculosis", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, pages 724-731. Abstract/PDF DOI

  21. M. Niemeijer, M. Garvin, K. Lee, B. van Ginneken, M. Abràmoff and M. Sonka. "Registration of 3D spectral OCT volumes using 3D SIFT feature point matching", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72591I-1-72591I-8. Abstract/PDF DOI

  22. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic classification of retinal vessels into arteries and veins", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601F1-72601F8. Abstract/PDF DOI

  23. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "A Linking Framework for Pixel Classification Based Retinal Vessel Segmentation", in: Medical Imaging, volume 7262 of Proceedings of the SPIE, 2009, pages 726216-1-726216-8. Abstract/PDF DOI

  24. R. Hupse and N. Karssemeijer. "The use of contextual information for computer aided detection of masses in mammograms", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, page 72600Q. Abstract/PDF DOI

  25. E.M. van Rikxoort, M. Prokop, B. de Hoop, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Automatic segmentation of the pulmonary lobes from fissures, airways, and lung borders: evaluation of robustness against missing data", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, pages 263-271. Abstract/PDF DOI PMID 20425996

  26. C.I. Sánchez, R. Hornero, A. Mayo and M. Garcia. "Mixture model-based clustering and logistic regression for automatic detection of microaneurysms in retinal images", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601M1-72601M8. Abstract/PDF

  27. C.I. Sánchez, M. Niemeijer, T. Kockelkorn, M.D. Abràmoff and B. van Ginneken. "Active learning approach for detection of hard exudates, cotton wool spots, and drusen in retinal images", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601I1-72601I8. Abstract/PDF DOI


Abstracts

  1. D. Vukadinovic, T. van Walsum, R. Manniesing, S. Rozie, T.T. de Weert, A. van der Lugt and W.J. Niessen. "Automated Segmentation of Atherosclerotic Plaque in MDCT Angiogaphy of the Carotid Artery", in: 2nd Dutch Conference on Biomedical Engineering, 2009. Abstract/PDF

  2. D.F. Stegeman, G.A. van Elswijk, W.J.M. van de Ven and B.U. Kleine. "The three frequencies: the alpha-motoneuron pool as transmitter of rhythmicities in cortico-spinal motor drive", in: International workshop and conference on human reflexes: wiring and firing of motoneurons, 2009. Abstract

  3. G. Litjens, M. Heisen, J. Buurman, A. Wood, M. Medved, G. Karczmar and B.T. Haar-Romeny. "T1 Quantification: Variable Flip Angle Method vs Use of Reference Phantom", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  4. E. Brunenberg, V. Prckovska, B. Platel, G. Strijkers and B.M. ter Haar Romeny. "Untangling a fiber bundle knot - Preliminary results on STN connectivity using DTI and HARDI on rat brains", in: Proceedings of the International Society for Magnetic Resonance in Medicine, 2009. Abstract/PDF

  5. B. van Ginneken, K. Murphy, E.M. van Rikxoort, I. Išgum, B. de Hoop, M. Prokop, P.A. de Jong and H. Gietema. "Quantification of Emphysema and Small Airway Disease in COPD Patients from Lobar Analysis of Volumetric Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  6. B. de Hoop, P. Zanen, H. Gietema, B. van Ginneken, H. Groen and M. Prokop. "The Predictive Value of CT Quantified Pulmonary Emphysema on the Decline of Lung Function in Chronic Smokers: Results of a Long-term Follow-up Study", in: Annual Meeting of the Radiological Society of North America, 2009.

  7. I. Išgum, B. van Ginneken, P.C. Jacobs, M.J. Gondrie, W.P.T.M. Mali and M. Prokop. "Automatic determination of cardiovascular risk from thoracic CT scans using a coronary calcium atlas", in: Annual Meeting of the Radiological Society of North America, 2009.

  8. A.M. Mendrik, E.P.A. Vonken, E.J. Smit, B. van Ginneken and M. Prokop. "Reduction of Venous Overprojection Using Cerebral Arteriograms from CT Perfusion Scans of Subarachnoid Hemorrhage Patients", in: Annual Meeting of the Radiological Society of North America, 2009.

  9. K. Murphy, B. van Ginneken, J.P.W. Pluim, T.A. Altes, M. Prokop and E.E. de Lange. "Comparison of airflow defects in asthma patients assessed by breath-hold inspiration and expiration CT and by hyperpolarized helium-3 magnetic resonance imaging", in: Annual Meeting of the Radiological Society of North America, 2009.

  10. E.M. van Rikxoort, M. Prokop, B. de Hoop, J.P.W. Pluim and B. van Ginneken. "Automatic Segmentation of the Pulmonary Lobes from Computed Tomography Chest CT Scans: Robustness Against Incomplete Fissures by Including Contextual Information", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  11. R. Manniesing, D. Vukadinovic, S. Rozie, M. Schaap, A. van der Lugt and W. Niessen. "Automated CTA Lumen Segmentation of the Atherosclerotic Carotid Artery Bifurcation", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract/PDF

  12. W. Deserno, O.A. Debats, Y. Hoogeveen and J.O. Barentsz. "Effect of MR Lymphography on the Probability for Lymph Node Involvement in Patients with Prostate Cancer", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  13. I. Išgum, P.C.A. Jacobs, M. Gondrie, B. van Ginneken, M. Oudkerk, W.P.T.M. Mali, Y. van der Graaf and M. Prokop. "Cardiovascular risk assessment in lung cancer screening scans: do coronary and aortic calcium scores yield comparable risks for individual subjects?", in: European Congress of Radiology, 2009. Abstract

  14. E.J. Smit, A.M. Mendrik, A. Waaijer, G. Bertolini, E.P.A. Vonken, B. van Ginneken and M. Prokop. "Reconstruction of high-quality CTA from noisy cerebral CT perfusion data", in: European Congress of Radiology, 2009. Abstract


Theses

  1. E.M. van Rikxoort. "Segmentation of anatomical structures in chest CT scans", PhD thesis, Utrecht University, The Netherlands, 2009. Abstract/PDF URL

  2. Y. Arzhaeva. "Computer-aided detection and quantification of interstitial lung disease from computed tomography and chest radiography", PhD thesis, Utrecht University, The Netherlands, 2009. Abstract/PDF URL


Other publications

  1. R. Manniesing. "Read and Write Support for MevisLab Dicom/Tiff Format", 2009. Abstract/PDF URL

  2. R. Manniesing. "DicomImport", 2009. Abstract/PDF URL

  3. R. Manniesing, M. Viergever and W. Niessen. "Vessel Enhancing Diffusion", 2009. Abstract/PDF URL

  4. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, J.R. McClelland, K. Mori, A. Reeves and J. Reinhardt. "The Second International Workshop on Pulmonary Image Analysis", 2009. Abstract/PDF URL


2008

Papers in international journals

  1. C. Schaefer-Prokop and M. Prokop. "CTPA for the diagnosis of acute pulmonary embolism during pregnancy", European Radiology 2008;18:2705-2708. Abstract/PDF DOI PMID 18795302

  2. J. Poza, R. Hornero, J. Escudero, A. Fernández and C.I. Sánchez. "Regional analysis of spontaneous MEG rhythms in patients with Alzheimer's disease using spectral entropies", Annals of Biomedical Engineering 2008;36:141-152. Abstract/PDF DOI PMID 17994279

  3. C.I. Sánchez, R. Hornero, M.I. López, M. Aboy, J. Poza and D. Abásolo. "A novel automatic image processing algorithm for detection of hard exudates based on retinal image analysis", Medical Engineering and Physics 2008;30(3):350-357. Abstract/PDF DOI PMID 17556004

  4. S.G. Armato and B. van Ginneken. "Anniversary paper: image processing and manipulation through the pages of Medical Physics", Medical Physics 2008;35:4488-4500. Abstract/PDF DOI PMID 18975696

  5. T. Hambrock, J.J. Fütterer, H.J. Huisman, C. Hulsbergen-van de Kaa, J. van Basten, I. van Oort, J.A. Witjes and J.O. Barentsz. "Thirty-two-channel coil 3T magnetic resonance-guided biopsies of prostate tumor suspicious regions identified on multimodality 3T magnetic resonance imaging: technique and feasibility", Investigative Radiology 2008;43:686-694. Abstract/PDF DOI PMID 18791410

  6. J. Veltman, M. Stoutjesdijk, R. Mann, H.J. Huisman, J.O. Barentsz, J.G. Blickman and C. Boetes. "Contrast-enhanced magnetic resonance imaging of the breast: the value of pharmacokinetic parameters derived from fast dynamic imaging during initial enhancement in classifying lesions", European Radiology 2008;18:1123-1133. Abstract/PDF DOI PMID 18270714

  7. P.C. Vos, T. Hambrock, C.A.H. van de Kaa, J.J. Fütterer, J.O. Barentsz and H.J. Huisman. "Computerized analysis of prostate lesions in the peripheral zone using dynamic contrast enhanced MRI", Medical Physics 2008;35:888-899. Abstract/PDF DOI PMID 18404925

  8. A.L. Eilertsen, N. Karssemeijer, P. Skaane, E. Qvigstad and P.M. Sandset. "Differential impact of conventional and low-dose oral hormone therapy, tibolone and raloxifene on mammographic breast density, assessed by an automated quantitative method", British Journal of Obstetrics and Gynaecology 2008;115:773-779. Abstract/PDF DOI PMID 18355366

  9. M. Kallenberg and N. Karssemeijer. "Computer-aided detection of masses in full-field digital mammography using screen-film mammograms for training", Physics in Medicine and Biology 2008;53:6879-6891. Abstract/PDF DOI PMID 19001703

  10. B.P.F. Lelieveldt and N. Karssemeijer. "Information Processing In Medical Imaging 2007", Medical Image Analysis 2008;12:729-730. PDF DOI PMID 18457986

  11. B. van Ginneken. "Computer-Aided Diagnosis in Thoracic Computed Tomography", Imaging Decisions MRI 2008;12:11-22. Abstract/PDF DOI

  12. C. Schaefer-Prokop, U. Neitzel, H.W. Venema, M. Uffmann and M. Prokop. "Digital chest radiography: an update on modern technology, dose containment and control of image quality", European Radiology 2008;18:1818-30. PDF DOI PMID 18431577

  13. P. Koopmans, R. Manniesing, W. Niessen, M. Viergever and M. Barth. "MR venography of the human brain using susceptibility weighted imaging at very high field strength", Magnetic Resonance Materials in Physics, Biology and Medicine 2008;21:149-158. Abstract/PDF DOI PMID 18188626

  14. R. Manniesing, M.A. Viergever, A. van der Lugt and W.J. Niessen. "Cerebral arteries: fully automated segmentation from CT angiography--a feasibility study", Radiology 2008;247:841-846. Abstract/PDF DOI PMID 18487538

  15. B.C. Stoel, D.G. Parr, E.M. Bakker, H. Putter, J. Stolk, H.A. Gietema, A.M. Schilham, B. van Ginneken, R.J. van Klaveren, J.W.J. Lammers and M. Prokop. "Can the extent of low-attenuation areas on CT scans really demonstrate changes in the severity of emphysema?", Radiology 2008;247:293-4; author reply 294. PDF DOI PMID 18372475

  16. M.D. Abràmoff, M. Niemeijer, M.S.A. Suttorp-Schulten, M.A. Viergever, S.R. Russell and B. van Ginneken. "Evaluation of a system for automatic detection of diabetic retinopathy from color fundus photographs in a large population of patients with diabetes", Diabetes Care 2008;31(2):193-198. Abstract/PDF DOI PMID 18024852

  17. E.M. van Rikxoort, B. van Ginneken, M. Klik and M. Prokop. "Supervised enhancement filters: application to fissure detection in chest CT scans", IEEE Transactions on Medical Imaging 2008;27:1-10. Abstract/PDF DOI PMID 18270056


Papers in conference proceedings

  1. R. MacLeod, E. Kholmovski, E. DiBella, R. Oakes, J. Blauer, E. Fish, S. Vijayakumar, M. Daccarett, N. Segerson and N. Marrouche. "Integration of MRI in evaluation and ablation of atrial fibrillation", in: Computers in Cardiology, 2008, pages 77-80. Abstract DOI

  2. E.M. van Rikxoort, M. de Bruijne and B. van Ginneken. "Integrating local voxel classification and global shape models for medical image segmentation", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 69144J-1 - 69144J-6. PDF DOI

  3. R. Brecheisen, A. Vilanova Bartroli, B. Platel and B.M. ter Haar Romeny. "Flexible GPU-Based Multi-Volume Ray-Casting", in: Vision Modeling and Visualization, 2008, pages 303-312. Abstract/PDF

  4. B. de Hoop, B. van Ginneken, C.M. Schaefer-Prokop, P.A. de Jong, H. Gietema and M. Prokop. "Workup of suspicious lesions on digital chest radiography: estimation of the number of unnecessary follow-up CT scans in relation to the threshold of radiological suspicion on chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2008.

  5. P.C. Vos, T. Hambrock, J.O. Barentsz and H.J. Huisman. "Combining T2-weighted with dynamic MR images for computerized classification of prostate lesions", in: Medical Imaging: Computer-Aided Diagnosis, volume 6915 of Proceedings of the SPIE, 2008.

  6. D. Vukadinovic, T. van Walsum, R. Manniesing, A. van der Lugt, T. de Weert and W. Niessen. "AdaBoost Classification for Model Based Segmentation of the Outer Vessel Wall", in: Medical Imaging, volume 6914 of Proceedings of the SPIE, 2008, pages 691418-1 - 691418-8. Abstract/PDF DOI

  7. N. de Carvalho Ferreira, M.Velikova and P. Lucas. "Bayesian Modelling of Multi-View Mammography", in: ICML workshop: Machine Learning for Health Care Applications, 2008. PDF

  8. G. van Schie and N. Karssemeijer. "Detection of Microcalcifications Using a Nonuniform Noise Model", in: IWDM '08: Proceedings of the 9th international workshop on Digital Mammography, 2008, pages 378-384. Abstract/PDF DOI

  9. M. García, C.I. Sánchez, M.I. López, A. Díez and R. Hornero. "Automatic detection of red lesions in retinal images using a multilayer perceptron neural network", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, volume 2008, 2008, pages 5425-5428. Abstract/PDF DOI PMID 19163944

  10. R. Hupse and N. Karssemeijer. "Feature selection for computer-aided detection: comparing different selection criteria", in: Medical Imaging, volume 6915 of Proceedings of the SPIE, 2008, page 691503. Abstract/PDF DOI

  11. B. van Ginneken, A. Tan, K. Murphy, B.J. de Hoop and M. Prokop. "Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans", in: Medical Imaging, volume 6915 of Proceedings of the SPIE, 2008, pages 69150X1-69150X10. Abstract/PDF DOI

  12. M. Niemeijer, M.K. Garvin, B. van Ginneken, M. Sonka and M.D. Abràmoff. "Vessel segmentation in 3D spectral OCT scans of the retina", in: Medical Imaging, volume 6914 of Proceedings of the SPIE, 2008. Abstract/PDF DOI

  13. M.G.J. Kallenberg and N. Karssemeijer. "The Effect of Training with SFM Images in a FFDM CAD System", in: Proceedings of SPIE -- Volume 6915, Medical Imaging 2008: Computer-Aided Diagnosis, volume 6915, 2008, page 691510. Abstract/PDF DOI

  14. M.G.J. Kallenberg and N. Karssemeijer. "The Effect of Training Sample Size on Performance of Mass Detection", in: IWDM '08: Proceedings of the 9th international workshop on Digital Mammography, 2008, pages 343-349. Abstract/PDF DOI

  15. K. Murphy, B. van Ginneken, J. Pluim, S. Klein and M. Staring. "Quantitative Assessment of Registration in Thoracic CT", in: The First International Workshop on Pulmonary Image Analysis, 2008, pages 203-211. Abstract/PDF

  16. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Automated localization of the optic disc and the fovea", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pages 3538-3541. Abstract/PDF DOI PMID 19163472

  17. N. Karssemeijer, A. Hupse, M. Samulski, M. Kallenberg, C. Boetes and G. Heeten. "An Interactive Computer Aided Decision Support System for Detection of Masses in Mammograms", in: IWDM '08: Proceedings of the 9th international workshop on Digital Mammography, 2008, pages 273-278. Abstract/PDF DOI

  18. N. Karssemeijer, M. Samulski, G. den Heeten and C. Boetes. "Analysis of Observer Performance Based on Probing Patterns in an Interactive CAD System for Mammographic Mass Detection", in: 94th Radiological Society of North America Scientific Assembly and Annual Meeting, 2008. Abstract URL

  19. N. Karssemeijer, M. Samulski, M. Kallenberg, A. Hupse, C. Boetes and G. den Heeten. "Effectiveness of an Interactive CAD System for Mammographic Mass Detection", in: 94th Radiological Society of North America Scientific Assembly and Annual Meeting, 2008. Abstract URL

  20. M. Samulski and N. Karssemeijer. "Linking mass regions in mediolateral oblique and cranio caudal views", in: Proceedings of the 14th ASCI conference, 2008, pages 214-221.

  21. M. Samulski and N. Karssemeijer. "Matching mammographic regions in mediolateral oblique and cranio caudal views: a probabilistic approach", in: Medical Imaging, volume 6915 of Proceedings of the SPIE, 2008, page 69151M. Abstract/PDF DOI

  22. M. Samulski, N. Karssemeijer, C. Boetes and G. den Heeten. "An Interactive Computer-aided Detection Workstation for Reading Mammograms", in: 94th Radiological Society of North America Scientific Assembly and Annual Meeting, 2008. Abstract/PDF URL

  23. M. Velikova, H. Daniels and M. Samulski. "Partially Monotone Networks Applied to Breast Cancer Detection on Mammograms", in: ICANN '08: Proceedings of the 18th international conference on Artificial Neural Networks, Part I, 2008, pages 917-926. Abstract/PDF DOI

  24. M. Velikova, P.J.F. Lucas, N. Ferreira, M. Samulski and N. Karssemeijer. "A decision support system for breast cancer detection in screening programs", in: Proceeding of the 2008 conference on ECAI 2008, 2008, pages 658-662. Abstract

  25. M. Velikova, M. Samulski, N. Karssemeijer and P. Lucas. "Toward Expert Knowledge Representation for Automatic Breast Cancer Detection", in: AIMSA '08: Proceedings of the 13th international conference on Artificial Intelligence, 2008, pages 333-344. Abstract/PDF DOI

  26. E.M. van Rikxoort, I. Išgum, M. Staring, S. Klein and B. van Ginneken. "Adaptive Local Multi-Atlas Segmentation: Application to Heart Segmentation in Chest CT Scans", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 691407-1-691407-6. Abstract/PDF DOI

  27. B. van Ginneken, W. Baggerman and E.M. van Rikxoort. "Robust segmentation and anatomical labeling of the airway tree from thoracic CT scans", in: Medical Image Computing and Computer-Assisted Intervention, volume 5241 of Lecture Notes in Computer Science, 2008, pages 219-226. Abstract/PDF DOI PMID 18979751

  28. K. Murphy, B. van Ginneken, S. Klein, M. Staring and J.P.W. Pluim. "Semi-Automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration", in: Medical Image Computing and Computer-Assisted Intervention, volume 5242 of Lecture Notes in Computer Science, 2008. Abstract/PDF DOI PMID 18982703


Abstracts

  1. B. van Ginneken, B. de Hoop and M. Prokop. "Automatic Estimation of Three-Dimensional Lung Volume from Posterior-Anterior and Lateral Chest Radiographs", in: Annual Meeting of the Radiological Society of North America, 2008.

  2. B. van Ginneken, B. de Hoop, E.M. van Rikxoort, K. Murphy and M. Prokop. "Relating Airway Morphology in Heavy Smokers to Pulmonary Function Impairment", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  3. B. van Ginneken, E.M. van Rikxoort, W. Baggerman, B. de Hoop and M. Prokop. "Automatic Extraction and Anatomical Labeling of the Airway Tree from Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  4. B. de Hoop, H. Gietema, B. van Ginneken, P. Zanen and M. Prokop. "Variability of semi-automated pulmonary nodule volume measurements: A comparison of 6 lung nodule evaluation software packages", in: Annual Meeting of the Radiological Society of North America, 2008.

  5. K. Murphy, B. van Ginneken, E.M. van Rikxoort, B. de Hoop, J.P.W. Pluim and M. Prokop. "Prediction of Obstructive Pulmonary Function by Quantitative Lobar Evaluation of Density Change between Inspiration and Expiration on Thoracic CT", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  6. K. Murphy, M. Prokop, C.M. Schaefer-Prokop, H. Gietema, G.D. Nossent, B. van Ginneken, J.P.W. Pluim and Y. Arzhaeva. "Improved Efficiency of Assessment of Interstitial Lung Disease Progression in CT of the Chest by Visualisation of Automatically-registered Image Pairs", in: Annual Meeting of the Radiological Society of North America, 2008.

  7. E.M. van Rikxoort, B. van Ginneken, J.G. Goldin, M.S. Brown and M. Prokop. "Automatic Quantification of Completeness of Pulmonary Fissures on a Large Database", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  8. A. Firouzian, R. Manniesing, A. van der Lugt, H. Flach and W. Niessen. "Intracranial Aneurysm Segmentation in CTA: Method and Quantitative Validation", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract/PDF

  9. P. Koopmans, R. Manniesing, W. Niessen, M. Viergever and M. Barth. "Vein Classification using Vesselness Filters on SWI Data Acquired at 3T and 7T", in: Annual Meeting of the International Society for Magnetic Resonance in Medicine, 2008. Abstract/PDF


Theses

  1. S. Lafebre. "From cosmic particle to radio pulse", PhD thesis, Radboud University Nijmegen MedicalCentre, Nijmegen, The Netherlands, 2008. Abstract/PDF URL

  2. C.I. Sánchez. "Retinal image analysis by mixture model based clustering and discriminant analysis for automatic detection of hard exudates and haemorhages: A tool for diabetic retinopathy screening", PhD thesis, Universidad de Valladolid, Spain, 2008. Abstract/PDF


Other publications

  1. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, K. Mori and J. Reinhardt. "The First International Workshop on Pulmonary Image Analysis", 2008. Abstract/PDF URL


2007

Papers in international journals

  1. A. Graser, F.T. Kolligs, T. Mang, C. Schaefer, S. Geisbüsch, M.F. Reiser and C.R. Becker. "Computer-aided detection in CT colonography: initial clinical experience using a prototype system", European Radiology 2007;17:2608-2615. Abstract/PDF DOI PMID 17429646

  2. J.J. Fütterer, T.W.J. Scheenen, S.W.T.P.J. Heijmink, H.J. Huisman, C.A.H.-V. de Kaa, J.A. Witjes, A. Heerschap and J.O. Barentsz. "Standardized threshold approach using three-dimensional proton magnetic resonance spectroscopic imaging in prostate cancer localization of the entire prostate", Investigative Radiology 2007;42:116-122. Abstract/PDF DOI PMID 17220729

  3. S.W.T.P.J. Heijmink, J.J. Fütterer, T. Hambrock, S. Takahashi, T.W.J. Scheenen, H.J. Huisman, C.A. Hulsbergen-Van de Kaa, B.C. Knipscheer, L.A.L.M. Kiemeney, J.A. Witjes and J.O. Barentsz. "Prostate cancer: body-array versus endorectal coil MR imaging at 3 T--comparison of image quality, localization, and staging performance", Radiology 2007;244:184-195. Abstract/PDF DOI PMID 17495178

  4. M. Nillesen, R. Lopata, I. Gerrits, L. Kapusta, H. Huisman, J. Thijssen and C. de Korte. "Segmentation of the heart muscle in 3-D pediatric echocardiographic images", Ultrasound in Medicine and Biology 2007;33:1453-1462. Abstract/PDF DOI PMID 17574727

  5. M.J. Stoutjesdijk, J. Veltman, H. Huisman, N. Karssemeijer, J.O. Barentsz, J.G. Blickman and C. Boetes. "Automated analysis of contrast enhancement in breast MRI lesions using mean shift clustering for ROI selection", Journal of Magnetic Resonance Imaging 2007;26:606-614. Abstract/PDF DOI PMID 17729367

  6. W.V. Vogel, J.A. van Dalen, B. Wiering, H. Huisman, F.H.M. Corstens, T.J.M. Ruers and W.J.G. Oyen. "Evaluation of image registration in PET/CT of the liver and recommendations for optimized imaging", Journal of Nuclear Medicine 2007;48:910-919. Abstract/PDF DOI PMID 17504865

  7. S. Timp, C. Varela and N. Karssemeijer. "Temporal change analysis for characterization of mass lesions in mammography", IEEE Transactions on Medical Imaging 2007;26:945-953. Abstract/PDF DOI PMID 17649908

  8. R. Manniesing, M.A. Viergever and W.J. Niessen. "Vessel axis tracking using topology constrained surface evolution", IEEE Transactions on Medical Imaging 2007;26:309-316. Abstract/PDF DOI PMID 17354637

  9. Y. Arzhaeva, M. Prokop, D.M.J. Tax, P.A. de Jong, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of interstitial abnormalities in chest radiographs using a reference standard based on computed tomography", Medical Physics 2007;34:4798-4809. Abstract/PDF DOI PMID 18196808

  10. J. Staal, B. van Ginneken and M.A. Viergever. "Automatic rib segmentation and labeling in computed tomography scans using a general framework for detection, recognition and segmentation of objects in volumetric data", Medical Image Analysis 2007;11:35-46. Abstract/PDF DOI PMID 17126065

  11. H.A. Gietema, A.M. Schilham, B. van Ginneken, R.J. van Klaveren, J.W.J. Lammers and M. Prokop. "Monitoring of smoking-induced emphysema with CT in a lung cancer screening setting: detection of real increase in extent of emphysema", Radiology 2007;244:890-897. Abstract/PDF DOI PMID 17709835

  12. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Detection of coronary calcifications from computed tomography scans for automated risk assessment of coronary artery disease", Medical Physics 2007;34:1450-1461. Abstract/PDF DOI PMID 17500476

  13. J.A. van Dalen, A.L. Hoffmann, V. Dicken, W.V. Vogel, B. Wiering, T.J. Ruers, N. Karssemeijer and W.J.G. Oyen. "A novel iterative method for lesion delineation and volumetric quantification with FDG PET", Nuclear Medicine Communications 2007;28:485-493. PDF DOI PMID 17460540

  14. S. van Engeland and N. Karssemeijer. "Combining two mammographic projections in a computer aided mass detection method", Medical Physics 2007;34:898-905. Abstract/PDF DOI PMID 17441235

  15. A.A.J. Roelofs, N. Karssemeijer, N. Wedekind, C. Beck, S. van Woudenberg, P.R. Snoeren, J.H.C.L. Hendriks, M.R. del Turco, N. Bjurstam, H. Junkermann, D. Beijerinck, B. Séradour and C.J.G. Evertsz. "Importance of comparison of current and prior mammograms in breast cancer screening", Radiology 2007;242:70-77. PDF DOI PMID 17185661

  16. P.R. Snoeren and N. Karssemeijer. "Gray-scale and geometric registration of full-field digital and film-screen mammograms", Medical Image Analysis 2007;11:146-156. Abstract/PDF DOI PMID 17208511

  17. A.A. Bankier, C. Schaefer-Prokop, V.D. Maertelaer, D. Tack, P. Jaksch, W. Klepetko and P.A. Gevenois. "Air trapping: comparison of standard-dose and simulated low-dose thin-section CT techniques", Radiology 2007;242:898-906. PDF PMID 17244721

  18. P. Peloschek, J. Sailer, M. Weber, C.J. Herold, M. Prokop and C.M. Schaefer-Prokop. "Pulmonary nodules: sensitivity of maximum intensity projection versus that of volume rendering of 3D multidetector CT data", Radiology 2007;243:561-569. PDF PMID 17456878

  19. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Segmentation of the optic disc, macula and vascular arch in fundus photographs", IEEE Transactions on Medical Imaging 2007;26(1):116-127. Abstract/PDF DOI PMID 17243590

  20. M. Niemeijer, B. van Ginneken, S.R. Russel, M.S.A. Suttorp-Schulten and M.D. Abràmoff. "Automated detection and differentiation of drusen, exudates, and cotton-wool spots in digital color fundus photographs for diabetic retinopathy diagnosis", Investigative Ophthalmology and Visual Science 2007;48(5):2260-2267. Abstract/PDF DOI PMID 17460289


Papers in conference proceedings

  1. E.J.L. Brunenberg, A. Vilanova, V. Visser-Vandewalle, Y. Temel, L. Ackermans, B. Platel and B.M. ter Haar Romeny. "Automatic trajectory planning for deep brain stimulation: a feasibility study", in: Medical Image Computing and Computer-Assisted Intervention, volume 10 of Lecture Notes in Computer Science, 2007, pages 584-592. Abstract/PDF PMID 18051106

  2. P. Vos, T. Hambrock, J. Fütterer, C. Hulsbergen-Van De Kaa, J. Barentsz and H. Huisman. "Effect of calibration on computerized analysis of prostate lesions using quantitative dynamic contrast-enhanced magnetic resonance imaging", in: Medical Imaging: Computer-Aided Diagnosis, volume 6514 of Proceedings of the SPIE, 2007.

  3. R. Manniesing and W. Niessen. "Automatic Segmentation of the Internal Carotid Arteries through the Skull Base", in: Medical Imaging, volume 6512 of Proceedings of the SPIE, 2007, pages 65120I-1 -65120I-5. Abstract/PDF DOI

  4. M. Velikova, N. de Carvalho Ferreira and P. Lucas. "Bayesian Network Decomposition for Modeling Breast Cancer Detection", in: Proceedings of the 11th Conference on Artificial Intelligence in Medicine, volume 4594 of Lecture Notes in Artificial Intelligence, 2007. Abstract/PDF DOI

  5. M. García, R. Hornero, C.I. Sánchez, M.I. López and A. Díez. "Feature extraction and selection for the automatic detection of hard exudates in retinal images", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2007, pages 4969-4972. Abstract DOI PMID 18003122

  6. H. Huisman and N. Karssemeijer. "Chestwall segmentation in 3D breast ultrasound using a deformable volume model", in: Information Processing in Medical Imaging of Lecture Notes in Computer Science, 2007, pages 245-256. Abstract/PDF DOI PMID 17633704

  7. M. Samulski, N. Karssemeijer, P. Lucas and P. Groot. "Classification of mammographic masses using support vector machines and Bayesian networks", in: Medical Imaging, volume 6514 of Proceedings of the SPIE, 2007, page 65141J. Abstract/PDF DOI

  8. M. Schaap, R. Manniesing, I. Smal, T. van Walsum, A. van der Lugt and W. Niessen. "Bayesian tracking of tubular structures and its application to carotid arteries in CTA", in: Medical Image Computing and Computer-Assisted Intervention, volume 10 of Lecture Notes in Computer Science, 2007, pages 562-570. Abstract/PDF DOI PMID 18044613

  9. E.M. van Rikxoort, Y. Arzhaeva and B. van Ginneken. "A multi-atlas approach to automatic segmentation of the caudate nucleus in MR brain images", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 29-36. Abstract/PDF

  10. Y. Arzhaeva, E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of caudate nucleus in MR brain images with voxel classification", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 65-72. PDF

  11. B. van Ginneken, T. Heimann and M. Styner. "3D Segmentation in the Clinic: A Grand Challenge", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 7-15. Abstract/PDF

  12. K. Murphy, A.M.R. Schilham, H. Gietema, M. Prokop and B. van Ginneken. "Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features", in: Medical Imaging, volume 6514 of Proceedings of the SPIE, 2007, pages 651410-1-651410-12. Abstract/PDF DOI


Abstracts

  1. H. Gietema, P. Zanen, A.M.R. Schilham, B. van Ginneken, R. van Klaveren and M. Prokop. "Distribution of emphysema in heavy smokers: Impact on extent of airflow limitation and gas exchange impairment", in: Annual Meeting of the Radiological Society of North America, 2007. PDF

  2. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Automated Calcium Scoring in the Aorta in Low Dose Non-contrast-enhanced CT Scans of the Thorax", in: Annual Meeting of the Radiological Society of North America, 2007. PDF

  3. A.M. Mendrik, E.P.A. Vonken, B. van Ginneken and M. Prokop. "Automatic segmentation of arteries and veins in 4D cerebral CT perfusion scans", in: Annual Meeting of the Radiological Society of North America, 2007.

  4. E.M. van Rikxoort, M. Prokop and B. van Ginneken. "Automatic Lung Segmentation from Chest CT Scans Using a Hybrid Algorithm Robust against Pathology", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract

  5. E.M. van Rikxoort, M. Prokop, B. de Hoop, H. Gietema and B. van Ginneken. "Automatic Estimation of Lobar and Segmental Variation of Emphysema Distribution in Chronic Smokers", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract

  6. Y. Arzhaeva, K. Murphy, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Application of computerized texture analysis of CT lung images for estimation of interstitial lung disease progression", in: Annual Meeting of the Radiological Society of North America, 2007.

  7. Y. Arzhaeva, M. Prokop, P.A. de Jong, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of interstitial abnormalities in chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2007.


Theses

  1. H.A. Gietema. "Low Dose Computed Tomography of the Chest: Applications and Limitations", PhD thesis, Utrecht University, The Netherlands, 2007. Abstract/PDF URL

  2. B. Platel. "Exploring the Deep Structure of Images", PhD thesis, University of Technology Eindhoven, 2007. Abstract/PDF URL

  3. I. Išgum. "Computer-aided detection and quantification of arterial calcifications with CT", PhD thesis, Utrecht University, The Netherlands, 2007. Abstract/PDF URL


Other publications

  1. T. Heimann, M. Styner and B. van Ginneken. "3D Segmentation in the Clinic: A Grand Challenge", 2007.


2006

Papers in international journals

  1. B. van Ginneken, M.B. Stegmann and M. Loog. "Segmentation of anatomical structures in chest radiographs using supervised methods: a comparative study on a public database", Medical Image Analysis 2006;10:19-40. Abstract/PDF DOI PMID 15919232

  2. M. Loog, B. van Ginneken and A.M.R. Schilham. "Filter learning: application to suppression of bony structures from chest radiographs", Medical Image Analysis 2006;10:826-840. Abstract/PDF DOI PMID 16859953

  3. J.M. Reinhardt, B. van Ginneken and M. Sonka. "Special Issue on Pulmonary Imaging", IEEE Transactions on Medical Imaging 2006;25:381-384. PDF DOI

  4. A.M.R. Schilham, B. van Ginneken and M. Loog. "A computer-aided diagnosis system for detection of lung nodules in chest radiographs with an evaluation on a public database", Medical Image Analysis 2006;10:247-258. Abstract/PDF DOI PMID 16293441

  5. I.C. Sluimer, M. Prokop, I. Hartmann and B. van Ginneken. "Automated classification of hyperlucency, fibrosis, ground glass, solid and focal lesions in high resolution CT of the lung", Medical Physics 2006;33:2610-2620. Abstract/PDF DOI PMID 16898465

  6. I.C. Sluimer, A.M.R. Schilham, M. Prokop and B. van Ginneken. "Computer analysis of computed tomography scans of the lung: a survey", IEEE Transactions on Medical Imaging 2006;25:385-405. Abstract/PDF DOI PMID 16608056

  7. R. Hornero, D. Abásolo, N. Jimeno, C.I. Sánchez, J. Poza and M. Aboy. "Variability, regularity, and complexity of time series generated by schizophrenic patients and control subjects", IEEE Transactions on Biomedical Engineering 2006;53:210-218. Abstract/PDF DOI PMID 16485749

  8. A.M.R. Schilham, B. van Ginneken, H. Gietema and M. Prokop. "Local noise weighted filtering for emphysema scoring of low-dose CT images", IEEE Transactions on Medical Imaging 2006;25:451-463. Abstract/PDF DOI PMID 16608060

  9. J.J. Fütterer, S.W.T.P.J. Heijmink, T.W.J. Scheenen, J. Veltman, H.J. Huisman, P. Vos, C.A. Hulsbergen-van de Kaa, J.A. Witjes, P.F.M. Krabbe, A. Heerschap and J.O. Barentsz. "Prostate cancer localization with dynamic contrast-enhanced MR imaging and proton MR spectroscopic imaging", Radiology 2006;241:449-458. Abstract/PDF DOI PMID 16966484

  10. E.N.J.T. van Lin, J.J. Fütterer, S.W.T.P.J. Heijmink, L.P. van der Vight, A.L. Hoffmann, P. van Kollenburg, H.J. Huisman, T.W.J. Scheenen, J.A. Witjes, J.W. Leer, J.O. Barentsz and A.G. Visser. "IMRT boost dose planning on dominant intraprostatic lesions: gold marker-based three-dimensional fusion of CT with dynamic contrast-enhanced and 1H-spectroscopic MRI", International Journal of Radiation Oncology, Biology, Physics 2006;65:291-303. Abstract/PDF DOI PMID 16618584

  11. C. Varela, S. Timp and N. Karssemeijer. "Use of border information in the classification of mammographic masses", Physics in Medicine and Biology 2006;51:425-441. Abstract/PDF DOI PMID 16394348

  12. M. Loog and B. van Ginneken. "Segmentation of the posterior ribs in chest radiographs using iterated contextual pixel classification", IEEE Transactions on Medical Imaging 2006;25:602-11. Abstract/PDF DOI PMID 16689264

  13. R. Manniesing, B.K. Velthuis, M.S. van Leeuwen, I.C. van der Schaaf, P.J. van Laar and W.J. Niessen. "Level set based cerebral vasculature segmentation and diameter quantification in CT angiography", Medical Image Analysis 2006;10:200-214. Abstract/PDF DOI PMID 16263325

  14. R. Manniesing, M.A. Viergever and W.J. Niessen. "Vessel enhancing diffusion: a scale space representation of vessel structures", Medical Image Analysis 2006;10:815-825. Abstract/PDF DOI PMID 16876462

  15. S. van Engeland, P.R. Snoeren, H. Huisman, C. Boetes and N. Karssemeijer. "Volumetric breast density estimation from full-field digital mammograms", IEEE Transactions on Medical Imaging 2006;25:273-282. Abstract/PDF DOI PMID 16524084

  16. S. van Engeland, S. Timp and N. Karssemeijer. "Finding corresponding regions of interest in mediolateral oblique and craniocaudal mammographic views", Medical Physics 2006;33:3203-3212. Abstract/PDF DOI PMID 17022213

  17. N. Karssemeijer, J.D.M. Otten, H. Rijken and R. Holland. "Computer aided detection of masses in mammograms as decision support", British Journal of Radiology 2006;79 Spec No 2:S123-S126. Abstract/PDF DOI PMID 17209117

  18. A.A.J. Roelofs, S. van Woudenberg, J.D.M. Otten, J.H.C.L. Hendriks, A. Bödicker, C.J.G. Evertsz and N. Karssemeijer. "Effect of soft-copy display supported by CAD on mammography screening performance", European Radiology 2006;16:45-52. Abstract/PDF DOI PMID 16132926

  19. S.E. Selvan, C.C. Xavier, N. Karssemeijer, J. Sequeira, R.A. Cherian and B.Y. Dhala. "Parameter estimation in stochastic mammogram model by heuristic optimization techniques", IEEE Transactions on Information Technology in Biomedicine 2006;10:685-695. Abstract/PDF DOI PMID 17044402

  20. S. Timp and N. Karssemeijer. "Interval change analysis to improve computer aided detection in mammography", Medical Image Analysis 2006;10:82-95. Abstract/PDF DOI PMID 15996893

  21. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Image structure clustering for image quality verification of color retina images in diabetic retinopathy screening", Medical Image Analysis 2006;10(6):888-898. Abstract/PDF DOI PMID 17138215


Papers in conference proceedings

  1. E.L. van den Broek, E.M. van Rikxoort, T. Kok and T.E. Schouten. "M-HinTS: Mimicking Humans in Texture Sorting", in: Human Vision and Electronic Imaging XI of Proceedings of the SPIE, 2006, pages 332-343. Abstract/PDF DOI

  2. M.A.J. Klik, E.M. van Rikxoort, J.F. Peters, H.A. Gietema, M. Prokop and B. van Ginneken. "Improved classification of pulmonary nodules by automated detection of benign subpleural lymph nodes", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 494-497. Abstract/PDF DOI

  3. M. Loog and B. van Ginneken. "Bony Structure Suppression in Chest Radiographs", in: Computer Vision Approaches to Medical Image Analysis, volume 4241 of Lecture Notes in Computer Science, 2006, pages 166-177. Abstract/PDF DOI

  4. A.M. Mendrik, E.P.A. Vonken, A.M.R. Schilham, M.A. Viergever and B. van Ginneken. "Hybrid diffusion compared with existing diffusion schemes on simulated low dose CT scans", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 1008-1011. Abstract/PDF DOI

  5. E.M. van Rikxoort and B. van Ginneken. "A pattern recognition approach to enhancing structures in 3D CT data", in: Medical Imaging of Proceedings of the SPIE, 2006, pages 61441O-1-61441O-8. Abstract/PDF DOI

  6. A.M.R. Schilham and B. van Ginneken. "Simulating nodules in chest radiographs with real nodules from multi-slice CT images", in: Medical Imaging of Proceedings of the SPIE, 2006, pages 614456-1-614456-8. Abstract/PDF DOI

  7. R. Manniesing and W.J. Niessen. "Shape Constrained Vessel Centerline Extraction by Integrating Surface Evolution and Topology Analysis", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 165-168. Abstract/PDF DOI

  8. M. García, C.I. Sánchez, A. Díez, M.I. López and R. Hornero. "Detection of hard exudates based on neural networks as a diagnostic aid in the screening for diabetic retinopathy", in: Telemedicine in Future Health, 2006.

  9. J. Poza, G. Vecilla, R. Hornero, M.I. López, C.I. Sánchez and A. Díez. "TeleOftalWeb 3.0: Web-based ophthalmologic medical record", in: Telemedicine in Future Health, 2006.

  10. C.I. Sánchez, M.I. López, M. García, A. Mayo and R. Hornero. "Automated retinal image analysis in a diabetic retinopathy telescreening program", in: Telemedicine in Future Health, 2006.

  11. C.I. Sánchez, A. Mayo, M. García, M.I. López and R. Hornero. "Automatic image processing algorithm to detect hard exudates based on mixture models", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, volume 1, 2006, pages 4453-4456. Abstract DOI PMID 17945839

  12. Y. Arzhaeva, B. van Ginneken and D.M.J. Tax. "Image classification from generalized image distance features: application to detection of interstitial disease in chest radiographs", in: International Conference on Pattern Recognition, 2006. Abstract/PDF DOI

  13. Y. Arzhaeva, D.M.J. Tax and B. van Ginneken. "Improving computer-aided diagnosis of interstitial disease in chest radiographs by combining one-class and two-class classifiers", in: Medical Imaging, volume 6144 of Proceedings of the SPIE, 2006, pages 614458-1-614458-8. Abstract/PDF DOI

  14. B. van Ginneken. "Supervised probabilistic segmentation of pulmonary nodules in CT scans", in: Medical Image Computing and Computer-Assisted Intervention, volume 4191 of Lecture Notes in Computer Science, 2006, pages 912-919. Abstract/PDF DOI PMID 17354860

  15. B. van Ginneken and A. Mendrik. "Image Denoising with k-nearest Neighbor and Support Vector Regression", in: International Conference on Pattern Recognition, volume 3, 2006, pages 603-606. Abstract/PDF DOI


Abstracts

  1. B. van Ginneken, M.A.J. Klik, E.M. van Rikxoort, H. Gietema, J. Peters and M. Prokop. "Computer-aided diagnosis for distinguishing benign perifissural opacities from other pulmonary nodules in computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract/PDF

  2. E.M. van Rikxoort, H. Gietema, M. Prokop and B. van Ginneken. "Fully automatic segmentation of pulmonary segments from computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract

  3. P.J. Koopmans, R. Manniesing, D.G. Norris, M.A. Viergever and M. Barth. "Vein Segmentation from 3D High Resolution MR Venograms by Using Vessel Enhancing Diffusion", in: European Society for Magnetic Resonance in Medicine and Biology, 2006. Abstract/PDF

  4. R. Manniesing and W.J. Niessen. "Automated Detection of the Internal Carotid Arteries in Multislice Cerebral CT Angiography", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract/PDF


Theses

  1. S. van Engeland. "Detection of mass lesions in mammograms by using multiple views", PhD thesis, Radboud University Nijmegen, 2006. Abstract/PDF URL

  2. R. Manniesing. "Image Analysis in CT Angiography", PhD thesis, Utrecht University, 2006. Abstract/PDF URL

  3. S. Timp. "Analysis of Temporal Mammogram Pairs to Detect and Characterise Mass Lesions", PhD thesis, Radboud University Nijmegen Medical Centre, 2006. Abstract/PDF URL

  4. M. Niemeijer. "Automatic detection of diabetic retinopathy in digital fundus photographs", PhD thesis, Utrecht University, The Netherlands, 2006. Abstract/PDF URL

  5. M. Samulski. "Classification of Breast Lesions in Digital Mammograms", Masters thesis, Radboud University Nijmegen, 2006. Abstract/PDF


2005

Papers in international journals

  1. C. Balassy, M. Prokop, M. Weber, J. Sailer, C.J. Herold and C. Schaefer-Prokop. "Flat-panel display (LCD) versus high-resolution gray-scale display (CRT) for chest radiography: an observer preference study", American Journal of Roentgenology 2005;184:752-756. Abstract/PDF PMID 15728593

  2. M. Memarsadeghi, G. Heinz-Peer, T.H. Helbich, C. Schaefer-Prokop, G. Kramer, M. Scharitzer and M. Prokop. "Unenhanced multi-detector row CT in patients suspected of having urinary stone disease: effect of section width on diagnosis", Radiology 2005;235:530-536. Abstract/PDF DOI PMID 15758192

  3. M. Uffmann, M. Prokop, E. Eisenhuber, M. Fuchsjäger, M. Weber and C. Schaefer-Prokop. "Computed radiography and direct radiography: influence of acquisition dose on the detection of simulated lung lesions", Investigative Radiology 2005;40:249-256. Abstract PMID 15829821

  4. M. Uffmann, M. Prokop, W. Kupper, T. Mang, V. Fiedler and C. Schaefer-Prokop. "Soft-copy reading of digital chest radiographs: effect of ambient light and automatic optimization of monitor luminance", Investigative Radiology 2005;40:180-185. Abstract/PDF PMID 15714093

  5. M. Loog, B. van Ginneken and R.P.W. Duin. "Dimensionality reduction of image features using the canonical contextual correlation projection", Pattern Recognition 2005;38:2409-2418. Abstract/PDF DOI

  6. M. Niemeijer, B. van Ginneken, J. Staal, M.S.A. Suttorp-Schulten and M.D. Abràmoff. "Automatic Detection of Red Lesions in Digital Color Fundus Photographs", IEEE Transactions on Medical Imaging 2005;24(5):584-592. Abstract/PDF DOI PMID 15889546

  7. I. Sluimer, M. Prokop and B. van Ginneken. "Towards automated segmentation of the pathological lung in CT", IEEE Transactions on Medical Imaging 2005;24:1025-1038. Abstract/PDF DOI PMID 16092334

  8. M.J. Stoutjesdijk, J.J. Fütterer, C. Boetes, L.E. van Die, G. Jager and J.O. Barentsz. "Variability in the description of morphologic and contrast enhancement characteristics of breast lesions on magnetic resonance imaging", Investigative Radiology 2005;40:355-362. Abstract/PDF PMID 15905722

  9. D. Abásolo, R. Hornero, P. Espino, J. Poza, C.I. Sánchez and R. de la Rosa. "Analysis of regularity in the EEG background activity of Alzheimer's disease patients with Approximate Entropy", Clinical Neurophysiology 2005;116:1826-1834. Abstract/PDF DOI PMID 15979403

  10. J.J. Fütterer, M.R. Engelbrecht, H.J. Huisman, G.J. Jager, C.A. Hulsbergen-van de Kaa, J.A. Witjes and J.O. Barentsz. "Staging prostate cancer with dynamic contrast-enhanced endorectal MR imaging prior to radical prostatectomy: experienced versus less experienced readers", Radiology 2005;237:541-549. Abstract/PDF DOI PMID 16244263

  11. H.J. Huisman, J.J. Fütterer, E.N.J.T. van Lin, A. Welmers, T.W.J. Scheenen, J.A. van Dalen, A.G. Visser, J.A. Witjes and J.O. Barentsz. "Prostate cancer: precision of integrating functional MR imaging with radiation therapy treatment by using fiducial gold markers", Radiology 2005;236:311-317. Abstract/PDF DOI PMID 15983070

  12. E.N.J.T. van Lin, L.P. van der Vight, J.A. Witjes, H.J. Huisman, J.W. Leer and A.G. Visser. "The effect of an endorectal balloon and off-line correction on the interfraction systematic and random prostate position variations: a comparative study", International Journal of Radiation Oncology, Biology, Physics 2005;61:278-288. Abstract/PDF DOI PMID 15629621

  13. E. Oschatz, M. Prokop, M. Scharitzer, M. Weber, C. Balassy and C. Schaefer-Prokop. "Comparison of liquid crystal versus cathode ray tube display for the detection of simulated chest lesions", European Radiology 2005;15:1472-6. PDF

  14. J.D.M. Otten, N. Karssemeijer, J.H.C.L. Hendriks, J.H. Groenewoud, J. Fracheboud, A.L.M. Verbeek, H.J. de Koning and R. Holland. "Effect of recall rate on earlier screen detection of breast cancers based on the Dutch performance indicators", Journal of the National Cancer Institute 2005;97:748-754. PDF DOI PMID 15900044

  15. S. Timp, S. van Engeland and N. Karssemeijer. "A regional registration method to find corresponding mass lesions in temporal mammogram pairs", Medical Physics 2005;32:2629-2638. Abstract/PDF DOI PMID 16193793

  16. C. Varela, N. Karssemeijer, J.H.C.L. Hendriks and R. Holland. "Use of prior mammograms in the classification of benign and malignant masses", European Journal of Radiology 2005;56:248-255. Abstract/PDF DOI PMID 15890483

  17. W.V. Vogel, J.A. van Dalen, H. Huisman, W.J.G. Oyen and N. Karssemeijer. "Sliced alternating DICOM series: convenient visualisation of image fusion on PACS", European Journal of Nuclear Medicine and Molecular Imaging 2005;32:247-248. PDF DOI PMID 15690224


Papers in conference proceedings

  1. E.L. van den Broek and E.M. van Rikxoort. "Parallel-Sequential Texture Analysis", in: Proceedings of the Third International Conference on Advances in Pattern Recognition of Lecture Notes in Computer Science, 2005, pages 532-541. Abstract/PDF DOI

  2. E.L. van den Broek, E.M. van Rikxoort and T. Schouten. "Human-centered object-based image retrieval", in: Proceedings of the Third International Conference on Advances in Pattern Recognition of Lecture Notes in Computer Science, 2005, pages 492-501. Abstract/PDF DOI

  3. E.M. van Rikxoort, E.L. van den Broek and T.E. Schouten. "Mimicking human texture classification", in: Human Vision and Electronic Imaging X of Proceedings of the SPIE, 2005, pages 215-226. Abstract/PDF DOI

  4. S. van Engeland, C. Varela, S. Timp, P. Snoeren and N. Karssemeijer. "Using context for mass detection and classification in mammograms", in: Medical Imaging, volume 5794 of Proceedings of the SPIE, 2005, pages 94-102. Abstract/PDF

  5. I. Išgum, B. van Ginneken, A. Rutten and M. Prokop. "Automated coronary calcification detection and scoring", in: 4th International Symposium on Image and Signal Processing and Analysis, 2005, pages 127-132. Abstract/PDF

  6. M. Niemeijer, B. van Ginneken, F. ter Haar and M.D. Abràmoff. "Automatic Detection of the Optic Disc, Fovea and Vascular Arch in Digital Color Photographs of the Retina", in: Proceedings of the British Machine Vision Conference, 2005, pages 109-118. Abstract/PDF

  7. A.M.R. Schilham, M. Prokop, H. Gietema and B. van Ginneken. "Local noise reduction for emphysema scoring in low-dose CT images", in: Medical Imaging, volume 5747 of Proceedings of the SPIE, 2005, pages 921-929. Abstract/PDF DOI

  8. S. van Engeland and N. Karssemeijer. "Regrouping initial CAD mass detections to facilitate classification of suspicious regions in mammography", in: Medical Imaging, volume 5747 of Proceedings of the SPIE, 2005, pages 975-986. Abstract/PDF DOI

  9. P.R. Snoeren and N. Karssemeijer. "Thickness correction of mammographic images by anisotropic filtering and interpolation of dense tissue", in: Medical Imaging, volume 5747 of Proceedings of the SPIE, 2005, pages 1521-1527. Abstract/PDF DOI

  10. D. Abásolo, C. Gómez, J. Poza, M. García, C.I. Sánchez and M. López. "EEG background activity analysis in Alzheimer's disease patients with sample entropy", in: International Conference on Computational Bioengineering, 2005, pages 1067-1076.

  11. R. Manniesing and W. Niessen. "Multiscale vessel enhancing diffusion in CT angiography noise filtering", in: Information Processing in Medical Imaging, volume 3565 of Lecture Notes in Computer Science, 2005, pages 138-149. Abstract/PDF DOI PMID 17354691

  12. N. Karssemeijer, P.R. Snoeren and W. Zhang. "Linearization of mammograms using parameters derived from noise characteristics", in: Information Processing in Medical Imaging, volume 3565 of Lecture Notes in Computer Science, 2005, pages 258-269. Abstract/PDF DOI PMID 17354701

  13. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Automatic detection of the presence of bright lesions in color fundus photographs", in: The 3rd European Medical and Biological Engineering Conference, 2005, pages 1832 (1-6). Abstract/PDF


Abstracts

  1. B. van Ginneken, A.M.R. Schilham, H. Gietema and M. Prokop. "Automatic correction for the influence of inspiration on pulmonary emphysema quantification from multidetector CT scans", in: Annual Meeting of the Radiological Society of North America, 2005.

  2. B. van Ginneken, I.C. Sluimer, M. Prokop and I. Hartmann. "Automatic detection of the presence of hyperlucencies, fibrosis, ground-glass, consolidations, and focal abnormalities in high resolution CT (HRCT) lung data", in: Annual Meeting of the Radiological Society of North America, 2005.

  3. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Automated Calcium Scoring for Risk Assessment of Coronary Artery Disease", in: Annual Meeting of the Radiological Society of North America, 2005.

  4. A.M.R. Schilham and B. van Ginneken. "Computer-aided diagnosis as a second reader for nodule detection in chest radiographs versus single and double reading", in: European Congress of Radiology, 2005. Abstract

  5. A.M.R. Schilham, B. van Ginneken, H. Gietema and M. Prokop. "Noise Filtering for Reliable Emphysema Quantification in Thin-slice Low-dose CT Images", in: Annual Meeting of the Radiological Society of North America, 2005.


Theses

  1. I.C. Sluimer. "Automated image analysis of the pathological lung in CT", PhD thesis, Utrecht University, The Netherlands, 2005. Abstract/PDF URL


Patents

  1. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic Detection of Red Lesions in Digital Color Fundus Photographs", 2005, United States Patent, patent number 7,474,775. URL


2004

Papers in international journals

  1. M. de Bruijne, B. van Ginneken, M.A. Viergever and W.J. Niessen. "Interactive segmentation of abdominal aortic aneurysms in CTA images", Medical Image Analysis 2004;8:127-138. Abstract/PDF DOI PMID 15063862

  2. I. Išgum, B. van Ginneken and M. Olree. "Automatic detection of calcifications in the aorta from CT scans of the abdomen", Academic Radiology 2004;11:247-257. Abstract/PDF DOI PMID 15035514

  3. J.J. Staal, M.D. Abràmoff, M. Niemeijer, M.A. Viergever and B. van Ginneken. "Ridge Based Vessel Segmentation in Color Images of the Retina", IEEE Transactions on Medical Imaging 2004;23(4):501-509. Abstract/PDF DOI PMID 15084075

  4. R. Manniesing, R. Kleihorst, A. van der Avoird and E. Hendriks. "Power analysis of a general convolution algorithm mapped on a linear processor array", Journal of VLSI Signal Processing Systems 2004;37:5-19. Abstract/PDF DOI

  5. J.J. Fütterer, T.W.J. Scheenen, H.J. Huisman, D.W.J. Klomp, F.A. van Dorsten, C.A. Hulsbergen-van de Kaa, J.A. Witjes, A. Heerschap and J.O. Barentsz. "Initial experience of 3 tesla endorectal coil magnetic resonance imaging and 1H-spectroscopic imaging of the prostate", Investigative Radiology 2004;39:671-680. Abstract/PDF PMID 15486528

  6. T. Veninga, H. Huisman, R.W.M. van der Maazen and H. Huizenga. "Clinical validation of the normalized mutual information method for registration of CT and MR images in radiotherapy of brain tumors", Journal of Applied Clinical Medical Physics 2004;5:66-79. Abstract/PDF PMID 15753941

  7. J. Sailer, M. Prokop, U. Neitzel, M. Weber, P. Peloschek and C. Schaefer-Prokop. "Comparison of an automatic versus a semiautomatic mode for gray-scale adaptation for digital chest radiography", Investigative Radiology 2004;39:325-33. PDF

  8. J.A. van Dalen, W. Vogel, H.J. Huisman, W.J.G. Oyen, G.J. Jager and N. Karssemeijer. "Accuracy of rigid CT-FDG-PET image registration of the liver", Physics in Medicine and Biology 2004;49:5393-5405. PDF DOI PMID 15656285

  9. K.J. McLoughlin, P.J. Bones and N. Karssemeijer. "Noise equalization for detection of microcalcification clusters in direct digital mammogram images", IEEE Transactions on Medical Imaging 2004;23:313-320. PDF DOI PMID 15027524

  10. P.R. Snoeren and N. Karssemeijer. "Thickness correction of mammographic images by means of a global parameter model of the compressed breast", IEEE Transactions on Medical Imaging 2004;23:799-806. PDF DOI PMID 15250632

  11. S. Timp and N. Karssemeijer. "A new 2D segmentation method based on dynamic programming applied to computer aided detection in mammography", Medical Physics 2004;31:958-971. Abstract/PDF DOI PMID 15191279


Papers in conference proceedings

  1. E.L. van den Broek and E.M. van Rikxoort. "Evaluation of color representation for texture analysis", in: Proceedings of the 16th Belgian Dutch Artificial Intelligence Conference (BNAIC), 2004, pages 35-42. Abstract/PDF URL

  2. A. Roelofs, S. van Woudenberg, J. Hendriks, C. Evertsz and N. Karssemeijer. "Effects of computer-aided diagnosis on radiologists' detection of breast masses", in: IWDM '04: Proceedings of the 7th International Workshop on Digital Mammography, 2004, pages 219-224.

  3. B. van Ginneken and M. Loog. "Pixel Position Regression - Application to medical image segmentation", in: International Conference on Pattern Recognition, 2004, pages 718-721. Abstract/PDF DOI

  4. I. Išgum, B. van Ginneken and M. Prokop. "A pattern recognition approach to automated coronary calcium scoring", in: International Conference on Pattern Recognition, 2004. Abstract/PDF DOI

  5. M. Loog and B. van Ginneken. "Static posterior probability fusion for signal detection: applications in the detection of interstitial diseases in chest radiographs", in: International Conference on Pattern Recognition, 2004, pages 644-647. Abstract/PDF DOI

  6. M. Loog, B. van Ginneken and R.P.W. Duin. "Dimensionality reduction by canonical contextual correlation projections", in: European Conference on Computer Vision, volume 3021 of Lecture Notes in Computer Science, 2004, pages 562-573. Abstract/PDF DOI

  7. M. Loog, B. van Ginneken and M. Nielsen. "Detection of interstitial lung disease in PA chest radiographs", in: Medical Imaging, volume 5368 of Proceedings of the SPIE, 2004, pages 848-855. Abstract/PDF DOI

  8. I.C. Sluimer, M. Niemeijer and B. van Ginneken. "Lung field segmentation from thin-slice CT scans in presence of severe pathology", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 1447-1455. Abstract/PDF DOI

  9. J.J. Staal, B. van Ginneken and M.A. Viergever. "Automatic rib segmentation in CT data", in: Computer Vision Approaches to Medical Image Analysis and Mathematical Methods in Biomedical Image Analysis, volume 3117 of Lecture Notes in Computer Science, 2004, pages 193-204. Abstract/PDF

  10. R. Manniesing and W.J. Niessen. "Local Speed Functions in Level Set Based Vessel Segmentation", in: Medical Image Computing and Computer-Assisted Intervention, volume 3216 of Lecture Notes in Computer Science, 2004, pages 475-482. Abstract/PDF DOI

  11. R. Manniesing, B.K. Velthuis, M. van Leeuwen and W.J. Niessen. "Skeletonization for re-initialization in level set-based vascular tree segmentation", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 506-514. Abstract/PDF DOI

  12. N. Karssemeijer, J.D. Otten, A.A.J. Roelofs, S. van Woudenberg and J.H.C.L. Hendriks. "Effect of independent multiple reading of mammograms on detection performance", in: Medical Imaging, volume 5372 of Proceedings of the SPIE, 2004, pages 82-89. PDF DOI

  13. R. Hornero, D. Abásolo, J. Poza, C.I. Sánchez, P. Espino and R. de la Rosa. "Use of wavelets packets to compare electroencephalogram signal (EEG) in patiens with Alzheimer's disease and control subjects", in: International Workshop of Systems, Signals and Image Processing, 2004, pages 35-38.

  14. R. Hornero, C.I. Sánchez and M.I. López. "Automated retinal image analysis in a teleophthalmology diabetic retinopathy screening program", in: Telemedicine Journal and e-Health, 2004.

  15. C.I. Sánchez, R. Hornero, M.I. López and J. Poza. "Retinal image analysis to detect and quantify lesions associated with diabetic retinopathy", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, volume 3, 2004, pages 1624-1627. Abstract DOI PMID 17272012

  16. M. Niemeijer, J.J. Staal, B. van Ginneken, M. Loog and M.D. Abràmoff. "Comparative Study of Retinal Vessel Segmentation Methods on a New Publicly Available Database", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 648-656. Abstract/PDF DOI


Theses

  1. M. Loog. "Supervised Dimensionality Reduction and Contextual Pattern Recognition in Medical Image Processing", PhD thesis, Utrecht University, The Netherlands, 2004. Abstract/PDF URL

  2. J.J. Staal. "Segmentation of elongated structures in medical images", PhD thesis, Utrecht University, The Netherlands, 2004. Abstract/PDF URL


2003

Papers in international journals

  1. E. Eisenhuber, A. Stadler, M. Prokop, M. Fuchsjager, M. Weber and C. Schaefer-Prokop. "Detection of monitoring materials on bedside chest radiographs with the most recent generation of storage phosphor plates: dose increase does not improve detection performance", Radiology 2003;227:216-221. Abstract/PDF DOI PMID 12668747

  2. M. Prokop, U. Neitzel and C. Schaefer-Prokop. "Principles of image processing in digital chest radiography", Journal of Thoracic Imaging 2003;18:148-164. Abstract/PDF PMID 12867812

  3. C. Schaefer-Prokop, M. Uffmann, E. Eisenhuber and M. Prokop. "Digital radiography of the chest: detector techniques and performance parameters", Journal of Thoracic Imaging 2003;18:124-137. Abstract/PDF PMID 12867810

  4. C. Schaefer-Prokop, M. Uffmann, J. Sailer, N. Kabalan, C. Herold and M. Prokop. "[Digital thorax radiography: flat-panel detector or storage phosphor plates]", Radiologe 2003;43:351-361. Abstract DOI PMID 12764583

  5. B. van Ginneken. "Computerized detection of interstitial disease in chest radiographs", Medical Imaging Technology 2003;21:15-20.

  6. B. van Ginneken and B.M. ter Haar Romeny. "Multi-scale texture classification from generalized locally orderless images", Pattern Recognition 2003;36:899-911. Abstract/PDF DOI

  7. I. Išgum and B. van Ginneken. "CT segmentation programs extract calcifications", Diagnostic Imaging Europe 2003;19:11-16. Abstract/PDF

  8. I.C. Sluimer, P.F. van Waes, M.A. Viergever and B. van Ginneken. "Computer-aided diagnosis in high-resolution CT of the lungs", Medical Physics 2003;30:3081-3090. Abstract/PDF DOI PMID 14713074

  9. M.R. Engelbrecht, H.J. Huisman, R.J.F. Laheij, G.J. Jager, G.J.L.H. van Leenders, C.A. Hulsbergen-van de Kaa, J.J.M.C.H. de la Rosette, J.G. Blickman and J.O. Barentsz. "Discrimination of prostate cancer from normal peripheral zone and central gland tissue by using dynamic contrast-enhanced MR imaging", Radiology 2003;229:248-254. Abstract/PDF DOI PMID 12944607

  10. M.H. Fuchsjäger, C.M. Schaefer-Prokop, E. Eisenhuber, P. Homolka, M. Weber, M.A. Funovics and M. Prokop. "Impact of ambient light and window settings on the detectability of catheters on soft-copy display of chest radiographs at bedside", American Journal of Roentgenology 2003;181:1415-1421. PDF

  11. C. Schaefer-Prokop and J.S. Klein. "Digital chest radiography", Journal of Thoracic Imaging 2003;18:123. PDF

  12. S. van Engeland, P. Snoeren, J. Hendriks and N. Karssemeijer. "A comparison of methods for mammogram registration", IEEE Transactions on Medical Imaging 2003;22:1436-1444. Abstract/PDF DOI PMID 14606677

  13. N. Karssemeijer, J.D.M. Otten, A.L.M. Verbeek, J.H. Groenewoud, H.J. de Koning, J.H.C.L. Hendriks and R. Holland. "Computer-aided detection versus independent double reading of masses on mammograms", Radiology 2003;227(1):192-200. PDF DOI PMID 12616008


Papers in conference proceedings

  1. M. de Bruijne, B. van Ginneken, L.W. Bartels, M.J. van der Laan, J.D. Blankensteijn, W.J. Niessen and M.A. Viergever. "Automated Segmentation of Abdominal Aortic Aneurysms in Multi-spectral MR Images", in: Medical Image Computing and Computer-Assisted Intervention, volume 2879 of Lecture Notes in Computer Science, 2003, pages 538-545. Abstract/PDF DOI

  2. M. de Bruijne, B. van Ginneken, W.J. Niessen, M. Loog and M.A. Viergever. "Model-based segmentation of abdominal aortic aneurysms in CTA images", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1560-1571. Abstract/PDF DOI

  3. B. van Ginneken, M. de Bruijne, M. Loog and M.A. Viergever. "Interactive Shape Models", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1206-1216. Abstract/PDF DOI

  4. I. Išgum, B. van Ginneken and M.A. Viergever. "Automatic detection of calcifications in the aorta from abdominal CT scans", in: Computer Assisted Radiology and Surgery, 2003, pages 1037-1042.

  5. M. Loog, B. van Ginneken and M.A. Viergever. "Segmenting the posterior ribs in chest radiographs by iterated contextual pixel classification", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 609-618. Abstract/PDF DOI

  6. M. Niemeijer, B. van Ginneken, C. Maas, F.J.A. Beek and M.A. Viergever. "Assessing the Skeletal Age From a Hand Radiograph: Automating the Tanner-Whitehouse Method", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1197-1205. Abstract/PDF DOI

  7. A.M.R. Schilham, B. van Ginneken and M. Loog. "Multi-scale nodule detection in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 2878 of Lecture Notes in Computer Science, 2003, pages 602-609. Abstract/PDF DOI

  8. S. van Engeland, P.R. Snoeren, N. Karssemeijer and J.H.C.L. Hendriks. "Optimized perception of lesion growth in mammograms using digital display", in: Medical Imaging, volume 5034 of Proceedings of the SPIE, 2003, pages 25-31. Abstract DOI

  9. T.A.A.J. Roelofs, S. van Woudenberg, J.H.C.L. Hendriks and N. Karssemeijer. "Optimized soft-copy display of digitized mammograms", in: Medical Imaging, volume 5034 of Proceedings of the SPIE, 2003, pages 10-19. Abstract DOI

  10. C. Varela, J.M. Muller and N. Karssemeijer. "Mammographic mass characterization using sharpness and lobulation measures", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 120-129. Abstract DOI

  11. M.I. López, C.I. Sánchez and R. Hornero. "Retinal image analysis to detect and quantify lesions associated with diabetic retinopathy", in: Association for Research in Vision and Ophthalmology, 2003.

  12. M. de Bruijne, B. van Ginneken, M.A. Viergever and W.J. Niessen. "Adapting Active Shape Models for 3D segmentation of tubular structures in medical images", in: Information Processing in Medical Imaging, volume 2732 of Lecture Notes in Computer Science, 2003, pages 136-147. Abstract/PDF DOI PMID 15344453

  13. P.R. Snoeren and N. Karssemeijer. "Gray scale registration of mammograms using a model of image acquisition", in: Information Processing in Medical Imaging, volume 18 of Lecture Notes in Computer Science, 2003, pages 401-412. Abstract/PDF DOI PMID 15344475

  14. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic Detection and Classification of Microaneurysms and Small Hemors in Colour Fundus Photographs", in: European Journal of Ophthalmology, volume 13, 2003, page 226.


Abstracts

  1. A.M.R. Schilham, B. van Ginneken and M. Loog. "Influence of the Number of Training Samples for Computer-Aided Detection of Lung Nodules in Chest Radiographs", in: Annual Meeting of the Radiological Society of North America, 2003.

  2. I.C. Sluimer, P.F.M.G. van Waes and B. van Ginneken. "Texture analysis for automated classification of lung HRCT images", in: Annual Meeting of the Radiological Society of North America, 2003.


Other publications

  1. M. Prokop, M. Galanski and C. Schaefer-Prokop. "Spiral and multislice computed tomography of the body", 2003. URL


2002

Papers in international journals

  1. C. Engelke, C. Schaefer-Prokop, E. Schirg, J. Freihorst, S. Grubnic and M. Prokop. "High-resolution CT and CT angiography of peripheral pulmonary vascular disorders", Radiographics 2002;22:739-764. Abstract/PDF PMID 12110707

  2. S. Puig, C. Schaefer-Prokop, T. Mang and M. Prokop. "Single- and multi-slice spiral computed tomography of the paediatric kidney", European Journal of Radiology 2002;43:139-145. Abstract/PDF PMID 12127211

  3. C. Schaefer-Prokop and M. Prokop. "New imaging techniques in the treatment guidelines for lung cancer", European Respiratory Journal Supplement 2002;35:71s-83s. Abstract/PDF PMID 12064683

  4. B. van Ginneken, S. Katsuragawa, B.M. ter Haar Romeny, K. Doi and M.A. Viergever. "Automatic detection of abnormalities in chest radiographs using local texture analysis", IEEE Transactions on Medical Imaging 2002;21:139-149. Abstract/PDF DOI PMID 11929101

  5. B. van Ginneken, A.F. Frangi, J.J. Staal, B.M. ter Haar Romeny and M.A. Viergever. "Active shape model segmentation with optimal features", IEEE Transactions on Medical Imaging 2002;21:924-933. Abstract/PDF DOI PMID 12472265


Papers in conference proceedings

  1. M. de Bruijne, B. van Ginneken, W.J. Niessen, J.B.A. Maintz and M.A. Viergever. "Active shape model based segmentation of abdominal aortic aneurysms in CTA images", in: Medical Imaging, volume 4684 of Proceedings of the SPIE, 2002, pages 463-474. Abstract/PDF DOI

  2. B. van Ginneken, B.M. ter Haar Romeny and M.A. Viergever. "Automatic segmentation and texture analysis of PA chest radiographs to detect abnormalities related to interstitial disease and tuberculosis", in: Computer Assisted Radiology and Surgery, 2002, pages 685-688.

  3. M. Loog and B. van Ginneken. "Supervised segmentation by Iterated Contextual Pixel Classification", in: International Conference on Pattern Recognition, 2002, pages 925-928. Abstract/PDF DOI

  4. I.C. Sluimer and B. van Ginneken. "Detection of abnormal tissue in HRCT scans of the chest", in: Computer Assisted Radiology and Surgery, 2002, page 1101.

  5. J.J. Staal, S.N. Kalitzin, B. van Ginneken, M.D. Abràmoff, T. Berendschot and M.A. Viergever. "Classifying convex sets for vessel detection in retinal images", in: IEEE International Symposium on Biomedical Imaging, 2002, pages 269-272. Abstract/PDF DOI

  6. S. Timp, N. Karssemeijer and J. Hendriks. "Analysis of changes in masses using contrast and size measures", in: IWDM '02: Proceedings of the 6th international workshop on Digital Mammography, 2002, pages 240-242.


2001

Papers in international journals

  1. C. Schaefer-Prokop, E. Eisenhuber, M. Fuchsjäger, S. Puig and M. Prokop. "[Current developments in the area of digital thoracic radiography]", Radiologe 2001;41:230-239. Abstract PMID 11322068

  2. C. Schaefer-Prokop, M. Prokop, D. Fleischmann and C. Herold. "High-resolution CT of diffuse interstitial lung disease: key findings in common disorders", European Radiology 2001;11:373-392. Abstract/PDF PMID 11288840

  3. M.L. Giger, N. Karssemeijer and S.G. Armato. "Computer-aided diagnosis in medical imaging", IEEE Transactions on Medical Imaging 2001;20:1205-1208. PDF PMID 11811820

  4. B. van Ginneken, B.M. ter Haar Romeny and M.A. Viergever. "Computer-aided diagnosis in chest radiography: a survey", IEEE Transactions on Medical Imaging 2001;20:1228-1241. Abstract/PDF DOI PMID 11811823

  5. C. Boetes and M. Stoutjesdijk. "MR imaging in screening women at increased risk for breast cancer", Magnetic Resonance Imaging Clinics of North America 2001;9:357-72, vii. Abstract PMID 11493425

  6. M.J. Stoutjesdijk and J.O. Barentsz. "Prophylactic mastectomy in carriers of BRCA mutations", New England Journal of Medicine 2001;345:1499; author reply 1499-1499.. PDF DOI PMID 11794206

  7. M.J. Stoutjesdijk, C. Boetes, G.J. Jager, L. Beex, P. Bult, J.H. Hendriks, R.J. Laheij, L. Massuger, L.E. van Die, T. Wobbes and J.O. Barentsz. "Magnetic resonance imaging and mammography in women with a hereditary risk of breast cancer", Journal of the National Cancer Institute 2001;93:1095-1102. Abstract/PDF PMID 11459871

  8. E.A. Boss, L.F. Massuger, L.A. Pop, L.C. Verhoef, H.J. Huisman, H. Boonstra and J.O. Barentsz. "Post-radiotherapy contrast enhancement changes in fast dynamic MRI of cervical carcinoma", Journal of Magnetic Resonance Imaging 2001;13:600-606. Abstract/PDF DOI PMID 11276105

  9. H.J. Huisman, M.R. Engelbrecht and J.O. Barentsz. "Accurate estimation of pharmacokinetic contrast-enhanced dynamic MRI parameters of the prostate", Journal of Magnetic Resonance Imaging 2001;13:607-614. Abstract/PDF PMID 11276106

  10. G.M. te Brake and N. Karssemeijer. "Segmentation of suspicious densities in digital mammograms", Medical Physics 2001;28:259-266. Abstract/PDF DOI PMID 11243351


Papers in conference proceedings

  1. B. van Ginneken. "Towards a clinical chest workstation", in: Proceedings of VISIM, 2001.

  2. B. van Ginneken, A.F. Frangi, J.J. Staal, B.M. ter Haar Romeny and M.A. Viergever. "A non-linear gray-level appearance model improves active shape model segmentation", in: IEEE Workshop on Mathematical Models in Biomedical Image Analysis, 2001, pages 205-212. Abstract/PDF DOI

  3. S. van Engeland and N. Karssemeijer. "Matching breast lesions in multiple mammographic views", in: Medical Image Computing and Computer-Assisted Intervention, volume 2208/2010 of Lecture Notes in Computer Science, 2001, pages 1172-1173. Abstract/PDF DOI


Theses

  1. B. van Ginneken. "Computer-aided diagnosis in chest radiography", PhD thesis, Utrecht University, The Netherlands, 2001. Abstract/PDF URL


2000

Papers in international journals

  1. B. van Ginneken and B.M. ter Haar Romeny. "Applications of locally orderless images", Journal of Visual Communication and Image Representation 2000;11:196-208. Abstract/PDF DOI

  2. B. van Ginneken and B.M. ter Haar Romeny. "Automatic segmentation of lung fields in chest radiographs", Medical Physics 2000;27:2445-2455. Abstract/PDF DOI PMID 11099215

  3. G.M. te Brake, N. Karssemeijer and J.H. Hendriks. "An automatic method to discriminate malignant masses from normal tissue in digital mammograms", Physics in Medicine and Biology 2000;45:2843-2857. PDF PMID 11049175

  4. W.J. Veldkamp and N. Karssemeijer. "Normalization of local contrast in mammograms", IEEE Transactions on Medical Imaging 2000;19:731-738. PDF DOI PMID 11055788

  5. W.J. Veldkamp, N. Karssemeijer, J.D. Otten and J.H. Hendriks. "Automated classification of clustered microcalcifications into malignant and benign types", Medical Physics 2000;27:2600-2608. Abstract/PDF DOI PMID 11128313


Papers in conference proceedings

  1. B. van Ginneken and B.M. ter Haar Romeny. "Automatic delineation of ribs in frontal chest radiographs", in: Medical Imaging, volume 3979 of Proceedings of the SPIE, 2000, pages 825-836. Abstract/PDF DOI

  2. R. Manniesing, I. Karkowski and H. Corporaal. "Automatic SIMD Parallelization of Embedded Applications Based on Pattern Recognition", in: Sixth International Euro-Par Conference on Parallel Processing of Lecture Notes in Computer Science, 2000, pages 349-356. Abstract/PDF DOI


Abstracts

  1. T. van Walsum, B. van Ginneken, J.J. Staal, E.J. Vonken and M.A. Viergever. "ImageXplorer (iX), an integrated Windows NT programming environment for rapid development of medical imaging applications", in: European Congress of Radiology, 2000.


Theses

  1. G.M. te Brake. "Computer Aided Detection of Masses in Digital Mammograms", PhD thesis, Katholieke Universiteit Nijmegen, 2000. Abstract/PDF URL

  2. W.J.H. Veldkamp. "Computer Aided Characterization of Microcalcification Clusters in Mammograms", PhD thesis, Katholieke Universiteit Nijmegen, The Netherlands, 2000. Abstract/PDF URL


1999

Papers in international journals

  1. J.O. Barentsz, M. Engelbrecht, G.J. Jager, J.A. Witjes, J. de LaRosette, B.P. van Der Sanden, H.J. Huisman and A. Heerschap. "Fast dynamic gadolinium-enhanced MR imaging of urinary bladder and prostate cancer", Journal of Magnetic Resonance Imaging 1999;10:295-304. Abstract/PDF DOI PMID 10508289

  2. K.J. Dana, B. van Ginneken, S.K. Nayar and J.J. Koenderink. "Reflectance and texture of real world surfaces", ACM Transactions on Graphics 1999;18:1-34. Abstract/PDF DOI

  3. B. van Ginneken, J.J. Koenderink and K.J. Dana. "Texture histograms as a function of irradiation and viewing direction", International Journal of Computer Vision 1999;31:169-184. Abstract/PDF DOI

  4. G.M. te Brake and N. Karssemeijer. "Single and multiscale detection of masses in digital mammograms", IEEE Transactions on Medical Imaging 1999;18:628-639. PDF DOI PMID 10504096

  5. C.H. van Gils, J.H. Hendriks, R. Holland, N. Karssemeijer, J.D. Otten, H. Straatman and A.L. Verbeek. "Changes in mammographic breast density and concomitant changes in breast cancer risk", European Journal of Cancer Prevention 1999;8:509-515. PDF PMID 10643940

  6. N. Karssemeijer, W.J. Veldkamp, G.M. te Brake and J.H. Hendriks. "[Reading screening mammograms with the help of neural networks]", Nederlands Tijdschrift voor Geneeskunde 1999;143:2232-2236. PDF PMID 10578420


Papers in conference proceedings

  1. B. van Ginneken and B.M. ter Haar Romeny. "Applications of locally orderless images", in: Scale-Space Theories in Computer Vision, volume 1682 of Lecture Notes in Computer Science, 1999, pages 10-21. Abstract/PDF DOI

  2. B. van Ginneken and B.M. ter Haar Romeny. "Automatic segmentation of lung fields in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 1679 of Lecture Notes in Computer Science, 1999, pages 184-191. Abstract/PDF DOI

  3. N. Karssemeijer. "Local orientation distribution as a function of spatial scale for detection of masses in mammograms", in: Information Processing in Medical Imaging, volume 1613 of Lecture Notes in Computer Science, 1999, pages 280-293. Abstract/PDF DOI

  4. R. Manniesing, I. Karkowski and H.Corporaal. "Evaluation of a Potential for Automatic SIMD Parallelization of Embedded Applications", in: Fifth Annual Conference of the Advanced School for Computing and Imaging, 1999, pages 103-110. Abstract/PDF

  5. G.M. te Brake, M.J. Stoutjesdijk and N. Karssemeijer. "Discrete dynamic contour model for mass segmentation in digital mammograms", in: Medical Imaging, volume 3661 of Proceedings of the SPIE, 1999, pages 911-919. Abstract DOI

  6. W.J.H. Veldkamp and N. Karssemeijer. "Improved method for detection of microcalcification clusters in digital mammograms", in: Medical Imaging, volume 3661 of Proceedings of the SPIE, 1999, pages 512-522. Abstract DOI


Theses

  1. R. Manniesing. "Power Analysis of a General Convolution Algorithm mapped on a Linear Processor Array", Masters thesis, Delft University of Technology, Electrical Engineering, 1999. Abstract/PDF


1998

Papers in international journals

  1. B. van Ginneken, M. Stavridi and J.J. Koenderink. "Diffuse and specular reflectance from rough surfaces", Applied Optics 1998;37:130-139. Abstract/PDF DOI PMID 18268570

  2. H.J. Huisman and J.M. Thijssen. "Adaptive texture feature extraction with application to ultrasonic image analysis", Ultrasonic Imaging 1998;20:132-148. Abstract PMID 9691370

  3. H.J. Huisman, J.M. Thijssen, D.J. Wagener and G.J. Rosenbusch. "Quantitative ultrasonic analysis of liver metastases", Ultrasound in Medicine and Biology 1998;24:67-77. Abstract/PDF DOI PMID 9483773

  4. H.J. Huisman and J.H. Thijssen. "An in vivo ultrasonic model of liver parenchyma", IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control 1998;45:739-750. Abstract/PDF DOI PMID 18244225

  5. G.M. te Brake, N. Karssemeijer and J.H. Hendriks. "Automated detection of breast carcinomas not detected in a screening program", Radiology 1998;207:465-471. PDF PMID 9577496

  6. N. Karssemeijer. "Automated classification of parenchymal patterns in mammograms", Physics in Medicine and Biology 1998;43:365-378. PDF DOI PMID 9509532


Papers in conference proceedings

  1. R. Manniesing, R. Kleihorst, R. van der Vleuten and E. Hendriks. "Implementation of Lossless Coding for Embedded Compression", in: IEEE Program for Research on Integrated Systems and Circuits/Workshop on Circuits, Systems and Signal Processing, 1998. Abstract/PDF


Theses

  1. H. Huisman. "In vivo ultrasonic tissue characterization of liver metastases", PhD thesis, Radboud University Nijmegen, 1998. Abstract/PDF URL


1997

Papers in international journals

  1. M. Prokop, C. Schaefer-Prokop and M. Galanski. "Spiral CT angiography of the abdomen", Abdominal Imaging 1997;22:143-153. PMID 9013522

  2. M. Prokop and C.M. Schaefer-Prokop. "Digital image processing", European Radiology 1997;7:S73-S82. Abstract PMID 9169105

  3. M. Prokop, H.O. Shin, A. Schanz and C.M. Schaefer-Prokop. "Use of maximum intensity projections in CT angiography: a basic review", Radiographics 1997;17:433-451. Abstract PMID 9084083

  4. C.M. Schaefer-Prokop and M. Prokop. "Storage phosphor radiography", European Radiology 1997;7 Suppl 3:S58-S65. Abstract PMID 9169103

  5. M. Stavridi, B. van Ginneken and J.J. Koenderink. "Surface bidirectional reflection distribution function and the texture of bricks and tiles", Applied Optics 1997;36:3717-3725. Abstract/PDF DOI PMID 18253397

  6. C. Schaefer-Prokop and M. Prokop. "Digital radiography of the chest: comparison of the selenium detector with other imaging systems", Medica Mundi 1997;41:2-11. PDF

  7. N. Karssemeijer and J.H. Hendriks. "Computer-assisted reading of mammograms", European Radiology 1997;7:743-748. Abstract/PDF DOI PMID 9166576


Papers in conference proceedings

  1. K.J. Dana, B. van Ginneken, S.K. Nayar and J.J. Koenderink. "Reflectance and texture of real-world surfaces", in: Computer Vision and Pattern Recognition, 1997, pages 151-157. Abstract/PDF DOI


1996

Papers in international journals

  1. N. Karssemeijer and M.A.O. Thijssen. "Determination of contrast-detail curves of mammography systems by automated image analysis", Digital Mammography 1996;96:155-160. PDF

  2. M. Prokop, C. Schaefer-Prokop and M. Galanski. "[Spiral CT of the lung. Technique, findings, value]", Radiologe 1996;36:457-469. Abstract PMID 8767115

  3. C.M. Schaefer-Prokop, M. Prokop, A. Schmidt, U. Neitzel and M. Galanski. "Selenium radiography versus storage phosphor and conventional radiography in the detection of simulated chest lesions", Radiology 1996;201:45-50. Abstract PMID 8816519

  4. H.J. Huisman and J.M. Thijssen. "Precision and accuracy of acoustospectrographic parameters", Ultrasound in Medicine and Biology 1996;22:855-871. Abstract/PDF DOI PMID 8923705

  5. N. Karssemeijer and G. te Brake. "Detection of stellate distortions in mammograms", IEEE Transactions on Medical Imaging 1996;15:611-619. PDF DOI PMID 18215942

  6. J.O. Barentsz, G.J. Jager, P.B. van Vierzen, J.A. Witjes, S.P. Strijk, H. Peters, N. Karssemeijer and S.H. Ruijs. "Staging urinary bladder cancer after transurethral biopsy: value of fast dynamic contrast-enhanced MR imaging", Radiology 1996;201:185-193. PDF PMID 8816542


Papers in conference proceedings

  1. F. Leymarie, A. de la Fortelle, J.J. Koenderink, A.M.L. Kappers, M. Stavridi, B. van Ginneken, S. Muller, S. Krake, O. Faugeras, L. Robert, C. Gauclin, S. Laveau and C. Zeller. "REALISE: reconstruction of REALity from Image SEquences", in: International Conference on Image Processing, 1996, pages 651-654. Abstract/PDF DOI

  2. M. Stavridi, B. van Ginneken and J.J. Koenderink. "Surface BRDF and texture of bricks", in: Three-Dimensional and Unconventional Imaging for Industrial Inspection and Metrology, volume 2599 of Proceedings of the SPIE, 1996, pages 406-417. Abstract DOI


1995

Papers in international journals

  1. A.G. Leppert, M. Prokop, C.M. Schaefer-Prokop and M. Galanski. "Detection of simulated chest lesions: comparison of a conventional screen-film combination, an asymmetric screen-film system, and storage phosphor radiography", Radiology 1995;195:259-263. Abstract PMID 7892482

  2. C.J. Olbricht, K. Paul, M. Prokop, A. Chavan, C.M. Schaefer-Prokop, K. Jandeleit, K.M. Koch and M. Galanski. "Minimally invasive diagnosis of renal artery stenosis by spiral computed tomography angiography", Kidney International 1995;48:1332-1337. Abstract PMID 8569096


1994

Papers in international journals

  1. M. Galanski, M. Prokop, A. Chavan, C. Schaefer, K. Jandeleit and C. Olbricht. "[Accuracy of CT angiography in the diagnosis of renal artery stenosis]", RöFo 1994;161:519-525. Abstract DOI PMID 7803775

  2. W.A. Kalender, K. Wedding, A. Polacin, M. Prokop, C. Schaefer-Prokop and M. Galanski. "[Basic principles of vascular imaging with spiral CT]", Aktuelle Radiologie 1994;4:287-297. Abstract PMID 7819289

  3. T.P. de Rooij, J.W. Oestmann, L.J. Schultze Kool, H.A. Vrooman, M. Prokop and C.M. Schaefer. "Application of AMBER in single- and dual-energy digital imaging: improvement in noise level and display dynamic range", Radiographics 1994;14:407-414. Abstract PMID 8190963

  4. A.P. Berkhoff, H.J. Huisman, J.M. Thijssen, E.M. Jacobs and R.J. Homan. "Fast scan conversion algorithms for displaying ultrasound sector images", Ultrasonic Imaging 1994;16:87-108. Abstract/PDF DOI PMID 7974911


1993

Papers in international journals

  1. N. Karssemeijer. "Adaptive noise equalization and recognition of microcalcification clusters in mammograms", Int J Patt Recogn Artif Intell 1993;7:1357-1375. PDF DOI

  2. A. Chavan, M. Galanski, K. Jandeleit, M. Prokop and C. Schaefer. "The kissing balloons technique. Simultaneous dilatation of stenoses of branch arteries at the bifurcation of the renal artery", Acta Radiologica 1993;34:486-488. Abstract PMID 8369186

  3. M. Galanski, A. Chavan, M. Prokop, C. Schaefer and J. Harms. "Current status of the imaging modalities in the pre- and postoperative diagnostic workup of liver transplant patients", Bildgebung 1993;60:56-62. Abstract PMID 8358213

  4. M. Galanski, M. Prokop, A. Chavan, C.M. Schaefer, K. Jandeleit and J.E. Nischelsky. "Renal arterial stenoses: spiral CT angiography", Radiology 1993;189:185-192. Abstract PMID 8372191

  5. T. Graeter, C. Schaefer, M. Prokop and J. Laas. "Three-dimensional vascular imaging--an additional diagnostic tool", Thoracic and Cardiovascular Surgeon 1993;41:183-185. Abstract DOI PMID 8367872

  6. M. Prokop, C. Schaefer, W.A. Kalender, A. Polacin and M. Galanski. "[Vascular imaging with spiral-CT. The path to CT-angiography]", Radiologe 1993;33:694-704. Abstract PMID 8303028

  7. M. Prokop, C.M. Schaefer, J.W. Oestmann and M. Galanski. "Improved parameters for unsharp mask filtering of digital chest radiographs", Radiology 1993;187:521-526. Abstract PMID 8475301

  8. C.M. Schaefer and M. Prokop. "Storage phosphor radiography of the chest", Radiology 1993;186:314-315. PMID 8421725

  9. N. Karssemeijer, J.T. Frieling and J.H. Hendriks. "Spatial resolution in digital mammography", Investigative Radiology 1993;28:413-419. Abstract/PDF PMID 8496034


Papers in conference proceedings

  1. N. Karssemeijer. "Recognition of clustered microcalcifications using a random field model", in: Medical Imaging, volume 1905 of Proceedings of the SPIE, 1993, pages 776-786. Abstract DOI

  2. N. Karssemeijer. "Common database for research in mammographic image analysis", in: Medical Imaging, volume 1905 of Proceedings of the SPIE, 1993, pages 542-543. DOI


1992

Papers in international journals

  1. M. Galanski, M. Prokop, E. Thorns, J.W. Oestmann, S. Reichelt, B. Haubitz, H. Milbradt, A. Gräser, L. Verner and C. Schaefer. "[The visibility of a central venous catheter using digital luminescence radiography in intensive care radiology]", RöFo 1992;156:68-72. Abstract/PDF DOI PMID 1733477

  2. M. Galanski, E. Schmoll, S. Reichelt, G. Böhmer, M. Prokop, C. Schaefer, A. Schüler, B. Ringe, F.W. Schmidt and H.J. Schmoll. "[Chemoembolization of hepatocellular carcinoma in cases of isolated liver involvement]", Radiologe 1992;32:49-55. Abstract PMID 1314400

  3. C.M. Schaefer, M. Prokop, J.W. Oestmann, W. Wiesmann, B. Haubitz, A. Meschede, S. Reichelt, E. Schirg, H.S. Stender and M. Galanski. "Impact of hard-copy size on observer performance in digital chest radiography", Radiology 1992;184:77-81. Abstract/PDF DOI PMID 1609106

  4. N. Karssemeijer. "Stochastic model for automated detection of calcifications in digital mammograms", Image and Vision Computing 1992;10:369 - 375. Abstract/PDF DOI

  5. H.W. Nab, N. Karssemeijer, L.J.V. Erning and J.H. Hendriks. "Comparison of digital and conventional mammography: a ROC study of 270 mammograms", Medical Informatics 1992;17:125-131. PDF PMID 1405832


1991

Papers in international journals

  1. J.W. Oestmann, M. Prokop, C.M. Schaefer and M. Galanski. "Hardware and software artifacts in storage phosphor radiography", Radiographics 1991;11:795-805. Abstract/PDF PMID 1947316

  2. J.W. Oestmann, S. Reichelt, M. Prokop, C. Schaefer and M. Galanski. "[Digital projection radiography]", Radiologe 1991;31:1-7. Abstract PMID 2006247


Papers in conference proceedings

  1. N. Karssemeijer and L.J. van Erning. "Iso-precision scaling of digitized mammograms to facilitate image analysis", in: Medical Imaging, volume 1445 of Proceedings of the SPIE, 1991, pages 166-177. Abstract/PDF DOI


1990

Papers in international journals

  1. C. Schaefer, M. Prokop and M. Galanski. "[Drug-induced changes in the lungs]", Radiologe 1990;30:564-573. Abstract PMID 2290925

  2. N. Karssemeijer. "A statistical method for automatic labeling of tissues in medical images", Machine Vision and Applications 1990;3:75-86. Abstract/PDF URL

  3. N. Karssemeijer. "A relaxation method for image segmentation using a spatially dependent stochastic model", Pattern Recognition Letters 1990;11:13 - 23. Abstract/PDF DOI

  4. H.W. Nab, N. Karssemeijer, L.J. van Erning, A.L. Verbeek and J.H. Hendriks. "[Digital mammography is very useful in mass screening of breast cancer]", Nederlands Tijdschrift voor Geneeskunde 1990;134:2383-2387. Abstract/PDF PMID 2263263


1989

Theses

  1. N. Karssemeijer. "Interpretation of Medical Images by Model Guided Analysis", PhD thesis, Radboud University Nijmegen, 1989. Abstract/PDF URL


1988

Papers in international journals

  1. P. Vink and N. Karssemeijer. "Low back muscle activity and pelvic rotation during walking", Anatomy and Embryology 1988;178:455-460. Abstract/PDF DOI PMID 3177896

  2. N. Karssemeijer, L.J. van Erning and E.G. Eijkman. "Recognition of organs in CT-image sequences: a model guided approach", Computers and Biomedical Research 1988;21:434-448. PDF DOI PMID 3180744


1987

Papers in international journals

  1. N. Karssemeijer and E.G. Eijkman. "Modelling and representation of myocardial perfusion images for the evaluation of diagnostic properties", Medical and Biological Engineering and Computing 1987;25:181-188. PDF DOI PMID 3695622