Publications of Eva van Rikxoort

Published

Papers in international journals

  1. J.-P. Charbonnier, E. Pompe, C. Moore, S. Humphries, B. van Ginneken, B. Make, E. Regan, J.D. Crapo, E.M. van Rikxoort and D.A. Lynch. "Airway wall thickening on CT: Relation to smoking status and severity of COPD", Respiratory Medicine 2019;146:36-41. Abstract/PDF DOI PMID

  2. J.-P. Charbonnier, K. Chung, E.T. Scholten, E.M. van Rikxoort, C. Jacobs, N. Sverzellati, M. Silva, U. Pastorino, B. van Ginneken and F. Ciompi. "Automatic segmentation of the solid core and enclosed vessels in subsolid pulmonary nodules", Nature Scientific Reports 2018;8:646. Abstract/PDF DOI PMID

  3. L. Gallardo-Estrella, E. Pompe, P.A. de Jong, C. Jacobs, E.M. van Rikxoort, M. Prokop, C.I. Sánchez and B. van Ginneken. "Normalized emphysema scores on low dose CT: Validation as an imaging biomarker for mortality", PLoS One 2017;12:e0188902. Abstract/PDF DOI PMID

  4. L. Gallardo Estrella, E. Pompe, J.-M. Kuhnigk, D.A. Lynch, S.P. Bhatt, B. van Ginneken and E.M. van Rikxoort. "Computed tomography quantification of tracheal abnormalities in COPD and their influence on airflow limitation", Medical Physics 2017;44:3594-3603. Abstract/PDF DOI PMID

  5. B.C. Lassen-Schmidt, J.-M. Kuhnigk, O. Konrad, B. van Ginneken and E. van Rikxoort. "Fast interactive segmentation of the pulmonary lobes from thoracic computed tomography data", Physics in Medicine and Biology 2017;62(16):6649-6665. Abstract/PDF DOI PMID

  6. J. Charbonnier, E. van Rikxoort, A. Setio, C. Schaefer-Prokop, B. van Ginneken and F. Ciompi. "Improving Airway Segmentation in Computed Tomography using Leak Detection with Convolutional Networks", Medical Image Analysis 2017;36:52-60. Abstract/PDF DOI PMID

  7. M. Pompe, E. van Rikxoort, O. Mets, J. Charbonnier, J. Kuhnigk, H. de Koning, M. Oudkerk, R. Vliegenthart, P. Zanen, J. Lammers, B. van Ginneken, P. de Jong and F. Mohamed Hoesein. "Follow-up of CT-derived airway wall thickness: Correcting for changes in inspiration level improves reliability", European Journal of Radiology 2016;85:2008-2013. Abstract/PDF DOI PMID

  8. T.D. Koster, E.M. van Rikxoort, R.-H. Huebner, F. Doellinger, K. Klooster, J. Charbonnier, S. Radhakrishnan, F.J.F. Herth and D.-J. Slebos. "Predicting Lung Volume Reduction after Endobronchial Valve Therapy Is Maximized Using a Combination of Diagnostic Tools", Respiration 2016;92:150-7. Abstract/PDF DOI PMID

  9. E. Pompe, P.A. de Jong, E.M. van Rikxoort, L. Gallardo Estrella, W.U. de Jong, R. Vliegenthart, M. Oudkerk, C.M. van der Aalst, B. van Ginneken, J.-W.J. Lammers and F.A. Mohamed Hoesein. "Smokers with emphysema and small airway disease on computed tomography have lower bone density", International Journal of Chronic Obstructive Pulmonary Disease 2016;11:1207-1216. Abstract/PDF DOI PMID

  10. J. Charbonnier, M. Brink, F. Ciompi, E. Scholten, C. Schaefer-Prokop and E. van Rikxoort. "Automatic Pulmonary Artery-Vein Separation and Classification in Computed Tomography Using Tree Partitioning and Peripheral Vessel Matching.", IEEE Transactions on Medical Imaging 2016:882-92. Abstract/PDF DOI PMID

  11. C. Jacobs, E.M. van Rikxoort, K. Murphy, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of pulmonary nodules: a comparative study using the public LIDC/IDRI database", European Radiology 2016;26:2139-2147. Abstract/PDF DOI PMID

  12. L. Gallardo-Estrella, D.A. Lynch, M. Prokop, D. Stinson, J. Zach, P.F. Judy, B. van Ginneken and E.M. van Rikxoort. "Normalizing computed tomography data reconstructed with different filter kernels: effect on emphysema quantification", European Radiology 2016;26:478-486. Abstract/PDF DOI PMID

  13. K. Klooster, N.H.T. ten Hacken, J.E. Hartman, H.A.M. Kerstjens, E.M. van Rikxoort and D.-J. Slebos. "Endobronchial Valves for Emphysema without Interlobar Collateral Ventilation", N Engl J Med 2015;373(24):2325-2335. Abstract/PDF DOI PMID

  14. D.-J. Slebos, E.M. van Rikxoort and W. van der Bij. "Air Trapping in Emphysema", American Journal of Respiratory and Critical Care Medicine 2015;192:e45. PDF DOI PMID

  15. S.J. van Riel, C.I. Sánchez, A.A. Bankier, D.P. Naidich, J. Verschakelen, E.T. Scholten, P.A. de Jong, C. Jacobs, E. van Rikxoort, L. Peters-Bax, M. Snoeren, M. Prokop, B. van Ginneken and C. Schaefer-Prokop. "Observer Variability for Classification of Pulmonary Nodules on Low-Dose CT Images and Its Effect on Nodule Management", Radiology 2015;277(3):863-871. Abstract/PDF DOI PMID

  16. E. Pompe, E.M. van Rikxoort, M. Schmidt, J. Rühaak, L. Gallardo-Estrella, R. Vliegenthart, M. Oudkerk, H.J. de Koning, B. van Ginneken, P.A. de Jong, J.-W.J. Lammers and F.A.A. Mohamed Hoesein. "Parametric response mapping adds value to current computed tomography biomarkers in diagnosing chronic obstructive pulmonary disease", American Journal of Respiratory and Critical Care Medicine 2015;191:1084-1086. PDF DOI PMID

  17. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, H.J.M. Groen, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Airway wall thickness associated with forced expiratory volume in 1 second decline and development of airflow limitation", European Respiratory Journal 2015;45:644-651. Abstract/PDF DOI PMID

  18. B.C. Lassen, C. Jacobs, J.-M. Kuhnigk, B. van Ginneken and E.M. van Rikxoort. "Robust semi-automatic segmentation of pulmonary subsolid nodules in chest computed tomography scans", Physics in Medicine and Biology 2015;60:1307-1323. Abstract/PDF DOI PMID

  19. C. Jacobs, E.M. van Rikxoort, E.T. Scholten, P.A. de Jong, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Solid, Part-Solid, or Non-solid?: Classification of Pulmonary Nodules in Low-Dose Chest Computed Tomography by a Computer-Aided Diagnosis System", Investigative Radiology 2015;50:168-173. Abstract/PDF DOI PMID

  20. R.A.P. Takx, R. Vliegenthart, F.A.A. Mohamed Hoesein, I. Išgum, H.J. de Koning, W.P.T.M. Mali, C.M. van der Aalst, P. Zanen, J.-W.J. Lammers, H.J.M. Groen, E.M. van Rikxoort, M. Schmidt, B. van Ginneken, M. Oudkerk, T. Leiner and P.A. de Jong. "Pulmonary function and CT biomarkers as risk factors for cardiovascular events in male lung cancer screening participants: the NELSON study", European Radiology 2015;25:65-71. Abstract/PDF DOI PMID

  21. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, O.M. Mets, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Contribution of CT Quantified Emphysema, Air Trapping and Airway Wall Thickness on Pulmonary Function in Male Smokers With and Without COPD", COPD 2014;11:503-509. Abstract/PDF DOI PMID

  22. T.T.J.P. Kockelkorn, C.M. Schaefer-Prokop, G. Bozovic, A. Muñoz-Barrutia, E.M. van Rikxoort, M.S. Brown, P.A. de Jong, M.A. Viergever and B. van Ginneken. "Interactive lung segmentation in abnormal human and animal chest CT scans", Medical Physics 2014;41:081915. Abstract/PDF DOI PMID

  23. R.D. Rudyanto, S. Kerkstra, E.M. van Rikxoort, C. Fetita, P.-Y. Brillet, C. Lefevre, W. Xue, X. Zhu, J. Liang, I. Öksüz, D. Ünay, K. Kadipasaoglu, R.S.J. Estépar, J.C. Ross, G.R. Washko, J.-C. Prieto, M.H. Hoyos, M. Orkisz, H. Meine, M. Hüllebrand, C. Stöcker, F.L. Mir, V. Naranjo, E. Villanueva, M. Staring, C. Xiao, B.C. Stoel, A. Fabijanska, E. Smistad, A.C. Elster, F. Lindseth, A.H. Foruzan, R. Kiros, K. Popuri, D. Cobzas, D. Jimenez-Carretero, A. Santos, M.J. Ledesma-Carbayo, M. Helmberger, M. Urschler, M. Pienn, D.G. Bosboom, A. Campo, M. Prokop, P.A. de Jong, C.O. de Solorzano, A. Muñoz-Barrutia and B. van Ginneken. "Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: The VESSEL12 study", Medical Image Analysis 2014;18:1217-1232. Abstract/PDF DOI PMID

  24. G. Deslee, K. Klooster, M. Hetzel, F. Stanzel, R. Kessler, C.-H. Marquette, C. Witt, S. Blaas, W. Gesierich, F.J.F. Herth, J. Hetzel, E.M. van Rikxoort and D.-J. Slebos. "Lung volume reduction coil treatment for patients with severe emphysema: a European multicentre trial", Thorax 2014;69:980-986. Abstract/PDF DOI PMID

  25. K. Klooster, N. ten Hacken, I. Franz, H. Kerstjens, E.M. van Rikxoort and D.J. Slebos. "Lung Volume Reduction Coil Treatment in Chronic Obstructive Pulmonary Disease Patients with Homogeneous Emphysema: A Prospective Feasibility Trial", Respiration 2014;88:116-125. Abstract/PDF DOI PMID

  26. C. Jacobs, E.M. van Rikxoort, T. Twellmann, E.T. Scholten, P.A. de Jong, J.M. Kuhnigk, M. Oudkerk, H.J. de Koning, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Automatic Detection of Subsolid Pulmonary Nodules in Thoracic Computed Tomography Images", Medical Image Analysis 2014;18:374-384. Abstract/PDF DOI PMID

  27. F.A.A. Mohamed Hoesein, M. Schmidt, O.M. Mets, H.A. Gietema, J.-W.J. Lammers, P. Zanen, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, I. Išgum, M. Prokop, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Discriminating dominant computed tomography phenotypes in smokers without or with mild COPD", Respiratory Medicine 2014;108:136-143. Abstract/PDF DOI PMID

  28. J. Huo, K. Okada, E.M. van Rikxoort, H.J. Kim, J.R. Alger, W.B. Pope, J.G. Goldin and M.S. Brown. "Ensemble segmentation for GBM brain tumors on MR images using confidence-based averaging", Medical Physics 2013;40:093502. Abstract/PDF DOI PMID

  29. E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review", Physics in Medicine and Biology 2013;58:R187-R220. Abstract/PDF DOI PMID

  30. O.M. Mets, M. Schmidt, C.F. Buckens, M.J. Gondrie, I. Išgum, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, M. Prokop, J.J. Lammers, P. Zanen, F.A.A. Mohamed Hoesein, W.P. Mali, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Diagnosis of chronic obstructive pulmonary disease in lung cancer screening Computed Tomography scans: independent contribution of emphysema, air trapping and bronchial wall thickening", Respiratory Research 2013;14:59. Abstract/PDF DOI PMID

  31. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Computed tomography structural lung changes in discordant airflow obstruction", PLoS One 2013;8:e65177. Abstract/PDF DOI PMID

  32. B. Lassen, E.M. van Rikxoort, M. Schmidt, S. Kerkstra, B. van Ginneken and J. Kuhnigk. "Automatic segmentation of the pulmonary lobes from chest CT scans based on fissures, vessels, and bronchi", IEEE Transactions on Medical Imaging 2013;32:210-222. Abstract/PDF DOI PMID

  33. P. Lo, B. van Ginneken, J.M. Reinhardt, Y. Tarunashree, P.A. de Jong, B. Irving, C. Fetita, M. Ortner, R. Pinho, J. Sijbers, M. Feuerstein, A. Fabijanska, C. Bauer, R. Beichel, C.S. Mendoza, R. Wiemker, J. Lee, A.P. Reeves, S. Born, O. Weinheimer, E.M. van Rikxoort, J. Tschirren, K. Mori, B. Odry, D.P. Naidich, I.J. Hartmann, E.A. Hoffman, M. Prokop, J.H. Pedersen and M. de Bruijne. "Extraction of Airways from CT (EXACT'09)", IEEE Transactions on Medical Imaging 2012;31:2093-2107. Abstract/PDF DOI PMID

  34. K. Murphy, J.P.W. Pluim, E.M. van Rikxoort, P.A. de Jong, B. de Hoop, H.A. Gietema, O. Mets, M. de Bruijne, P. Lo, M. Prokop and B. van Ginneken. "Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT", Medical Physics 2012;39:1650-1662. Abstract/PDF DOI PMID

  35. F.A.A. Mohamed Hoesein, E.M. van Rikxoort, B. van Ginneken, P.A. de Jong, M. Prokop, J.-W.J. Lammers and P. Zanen. "CT-quantified emphysema distribution is associated with lung function decline", European Respiratory Journal 2012;40:844-850. Abstract/PDF DOI PMID

  36. D. Chong, M.S. Brown, H.J. Kim, E.M. van Rikxoort, L. Guzman, M.F. McNitt-Gray, M. Khatonabadi, M. Galperin-Aizenberg, K. Yang, Y. Jung and J.G. Goldin. "Reproducibility of volume and densitometric measures of emphysema on repeat computed tomography with an interval of 1 week", European Radiology 2012:287-294. Abstract/PDF DOI PMID

  37. E.M. van Rikxoort, J. Goldin, F. Abtin, H.J. Kim, P. Lu, B. van Ginneken, G. Shaw, M. Galperin-Aizenberg and M.S. Brown. "A method for the automatic quantification of the completeness of pulmonary fissures: evaluation in a database of subjects with severe emphysema", European Radiology 2012;22:302-309. Abstract/PDF DOI PMID

  38. E.M. van Rikxoort, M. Prokop, B. de Hoop, M. Viergever, J. Pluim and B. van Ginneken. "Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures", IEEE Transactions on Medical Imaging 2010;29:1286-1296. Abstract/PDF DOI PMID

  39. Y. Arzhaeva, M. Prokop, K. Murphy, E.M. van Rikxoort, P.A. de Jong, H.A. Gietema, M.A. Viergever and B. van Ginneken. "Automated estimation of progression of interstitial lung disease in CT images", Medical Physics 2010;37:63-73. Abstract/PDF DOI PMID

  40. E.M. van Rikxoort, I. Išgum, Y. Arzhaeva, M. Staring, S. Klein, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Adaptive local multi-atlas segmentation: application to the heart and the caudate nucleus", Medical Image Analysis 2010;14:39-49. Abstract/PDF DOI PMID

  41. E.M. van Rikxoort, B. de Hoop, M.A. Viergever, M. Prokop and B. van Ginneken. "Automatic lung segmentation from thoracic computed tomography scans using a hybrid approach with error detection", Medical Physics 2009;36:2934-2947. Abstract/PDF DOI PMID

  42. T. Heimann, B. van Ginneken, M. Styner, Y. Arzhaeva, V. Aurich, C. Bauer, A. Beck, C. Becker, R. Beichel, G. Bekes, F. Bello, G. Binnig, H. Bischof, A. Bornik, P. Cashman, Y. Chi, A. Cordova, B. Dawant, M. Fidrich, J. Furst, D. Furukawa, L. Grenacher, J. Hornegger, D. Kainmuller, R. Kitney, H. Kobatake, H. Lamecker, T. Lange, J. Lee, B. Lennon, R. Li, S. Li, H.-P. Meinzer, G. Nemeth, D. Raicu, A.-M. Rau, E. van Rikxoort, M. Rousson, L. Rusko, K. Saddi, G. Schmidt, D. Seghers, A. Shimizu, P. Slagmolen, E. Sorantin, G. Soza, R. Susomboon, J. Waite, A. Wimmer and I. Wolf. "Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets", IEEE Transactions on Medical Imaging 2009;28:1251-1265. Abstract/PDF DOI PMID

  43. E.M. van Rikxoort, B. de Hoop, S. van de Vorst, M. Prokop and B. van Ginneken. "Automatic segmentation of pulmonary segments from volumetric chest CT scans", IEEE Transactions on Medical Imaging 2009;28:621-630. Abstract/PDF DOI PMID

  44. E.M. van Rikxoort, B. van Ginneken, M. Klik and M. Prokop. "Supervised enhancement filters: application to fissure detection in chest CT scans", IEEE Transactions on Medical Imaging 2008;27:1-10. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. A.A.A. Setio, C. Jacobs, F. Ciompi, S.J. van Riel, M.M.W. Wille, A. Dirksen, E.M. van Rikxoort and B. van Ginneken. "Computer-aided detection of lung cancer: combining pulmonary nodule detection systems with a tumor risk prediction model", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015. Abstract/PDF DOI

  2. C. Jacobs, S.H.T. Opdam, E.M. van Rikxoort, O.M. Mets, J. Rooyackers, P.A. de Jong, M. Prokop and B. van Ginneken. "Automated detection and quantification of micronodules in thoracic CT scans to identify subjects at risk for silicosis", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 90351I. Abstract/PDF DOI

  3. P. Lo, E.M. van Rikxoort, J. Goldin and M.S. Brown. "Semi-automated segmentation of pulmonary lobes in chest CT scans using evolving surfaces", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013. Abstract/PDF

  4. L. Gallardo-Estrella, B. van Ginneken and E.M. van Rikxoort. "Normalization of CT scans reconstructed with different kernels to reduce variability in emphysema measurements", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700E. Abstract/PDF DOI

  5. P. Lo, E.M. van Rikxoort, F. Abtin, S. Ahmad, A. Ordookhani, J.G. Goldin and M.S. Brown. "Automated segmentation of pulmonary lobes in chest CT scans using evolving surfaces", in: Medical Imaging, volume 8869 of Proceedings of the SPIE, 2013, page 86693R. Abstract/PDF DOI

  6. E.M. van Rikxoort, P.A. de Jong, O.M. Mets and B. van Ginneken. "Automatic classication of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, pages 83150P-83150P-6. Abstract/PDF DOI

  7. P. Lo, E.M. van Rikxoort, J.G. Goldin, F. Abtin, M. de Bruijne and M.S. Brown. "A bottom-up approach for labeling of human airway trees", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 23-34. Abstract

  8. E.M. van Rikxoort and B. van Ginneken. "Automatic segmentation of the lungs and lobes from thoracic CT scans", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 261-268. Abstract

  9. D. Chong, E.M. van Rikxoort, H.J. Kim, J.G. Goldin and M.S. Brown. "Scan-rescan reproducibility of CT densitometric measures of emphysema", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 796339-1-796339-6. Abstract/PDF DOI

  10. J. Huo, E.M. van Rikxoort, K. Okada, H.J. Kim, W. Pope, J.G. Goldin and M.S. Brown. "Confidence-based ensemble for GBM brain tumor segmentation", in: Medical Imaging, volume 7962 of Proceedings of the SPIE, 2011, pages 79622P-1-79622P-6. Abstract/PDF DOI

  11. B. Lassen, J.M. Kuhnigk, E.M. van Rikxoort and H.O. Peitgen. "Interactive lung lobe segmentation and correction in tomographic images", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 79631S-1-79631S-6. Abstract/PDF DOI

  12. E.M. van Rikxoort, J.G. Goldin, M. Galperin-Aizenberg and M.S. Brown. "Classification of pulmonary emphysema from chest CT scans using integral geometry descriptors", in: Medical Imaging, volume 7963 of Proceedings of the SPIE, 2011, pages 79631O-1-79631O-6. Abstract/PDF DOI

  13. E. van Rikxoort, M. Galperin-Aizenberg, J.G. Goldin, T.T.J.P. Kockelkorn, B. van Ginneken and M.S. Brown. "Multi-classifier semi-supervised classification of tuberculosis patterns on chest CT scans", in: The Third International Workshop on Pulmonary Image Analysis, 2010, pages 41-48. Abstract/PDF

  14. T.T.J.P. Kockelkorn, E.M. van Rikxoort, J.C. Grutters and B. van Ginneken. "Interactive lung segmentation in CT scans with severe abnormalities", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 564-567. Abstract/PDF DOI

  15. E.M. van Rikxoort, J.G. Goldin, B. van Ginneken, M. Galperin-Aizenberg, C. Ni and M.S. Brown. "Interactively learning a patient specific k-nearest neighbor classifier based on confidence weighted samples", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 556-559. Abstract/PDF DOI

  16. E. van Rikxoort, W. Baggerman and B. van Ginneken. "Automatic segmentation of the airway tree from thoracic CT scans using a multi-threshold approach", in: The Second International Workshop on Pulmonary Image Analysis, 2009, pages 341-349. Abstract/PDF

  17. E.M. van Rikxoort, M. Prokop, B. de Hoop, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Automatic segmentation of the pulmonary lobes from fissures, airways, and lung borders: evaluation of robustness against missing data", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, pages 263-271. Abstract/PDF DOI PMID

  18. E.M. van Rikxoort, M. de Bruijne and B. van Ginneken. "Integrating local voxel classification and global shape models for medical image segmentation", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 69144J-1 - 69144J-6. PDF DOI

  19. E.M. van Rikxoort, I. Išgum, M. Staring, S. Klein and B. van Ginneken. "Adaptive Local Multi-Atlas Segmentation: Application to Heart Segmentation in Chest CT Scans", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 691407-1-691407-6. Abstract/PDF DOI

  20. B. van Ginneken, W. Baggerman and E.M. van Rikxoort. "Robust segmentation and anatomical labeling of the airway tree from thoracic CT scans", in: Medical Image Computing and Computer-Assisted Intervention, volume 5241 of Lecture Notes in Computer Science, 2008, pages 219-226. Abstract/PDF DOI PMID

  21. E.M. van Rikxoort, Y. Arzhaeva and B. van Ginneken. "A multi-atlas approach to automatic segmentation of the caudate nucleus in MR brain images", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 29-36. Abstract/PDF

  22. Y. Arzhaeva, E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of caudate nucleus in MR brain images with voxel classification", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 65-72. PDF

  23. E.L. van den Broek, E.M. van Rikxoort, T. Kok and T.E. Schouten. "M-HinTS: Mimicking Humans in Texture Sorting", in: Human Vision and Electronic Imaging XI of Proceedings of the SPIE, 2006, pages 332-343. Abstract/PDF DOI

  24. M.A.J. Klik, E.M. van Rikxoort, J.F. Peters, H.A. Gietema, M. Prokop and B. van Ginneken. "Improved classification of pulmonary nodules by automated detection of benign subpleural lymph nodes", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 494-497. Abstract/PDF DOI

  25. E.M. van Rikxoort and B. van Ginneken. "A pattern recognition approach to enhancing structures in 3D CT data", in: Medical Imaging of Proceedings of the SPIE, 2006, pages 61441O-1-61441O-8. Abstract/PDF DOI

  26. E.L. van den Broek and E.M. van Rikxoort. "Parallel-Sequential Texture Analysis", in: Proceedings of the Third International Conference on Advances in Pattern Recognition of Lecture Notes in Computer Science, 2005, pages 532-541. Abstract/PDF DOI

  27. E.L. van den Broek, E.M. van Rikxoort and T. Schouten. "Human-centered object-based image retrieval", in: Proceedings of the Third International Conference on Advances in Pattern Recognition of Lecture Notes in Computer Science, 2005, pages 492-501. Abstract/PDF DOI

  28. E.M. van Rikxoort, E.L. van den Broek and T.E. Schouten. "Mimicking human texture classification", in: Human Vision and Electronic Imaging X of Proceedings of the SPIE, 2005, pages 215-226. Abstract/PDF DOI

  29. E.L. van den Broek and E.M. van Rikxoort. "Evaluation of color representation for texture analysis", in: Proceedings of the 16th Belgian Dutch Artificial Intelligence Conference (BNAIC), 2004, pages 35-42. Abstract/PDF URL


Abstracts

  1. J. Charbonnier, E. Pompe, C. Moore, S. Humphries, B. van Ginneken, D. Lynch, B. Make and E. van Rikxoort. "Airway Dimensions in Current and Former smokers: an independent predictor of Airflow Obstruction and Respiratory Quality of Life in Cigarette Smokers", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  2. J. Charbonnier, D. Lynch, S. Humphries, M. Strand and E. van Rikxoort. "Relative Contributions of Quantitative CT Measures to Airflow Obstruction in Cigarette Smokers", in: American Thoracic Society International Conference, 2016. Abstract

  3. J. Charbonnier, M. Brink, F. Ciompi, E.T. Scholten, C.M. Schaefer-Prokop and E.M. Van Rikxoort. "Automatic Separation and Classification of Arteries and Veins in Non-Contrast Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  4. J. Charbonnier, L. Hogeweg, J. Kuhnigk, D.A. Lynch and E.M. Van Rikxoort. "Sensitivity of airway wall thickness measurements: influence of small airways", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  5. E. Pompe, P. De Jong, E. Van Rikxoort, L. Gallardo-Estrella, W. De Jong, R. Vliegenthart, M. Oudkerk, C. Van der Aalst, B. Van Ginneken, J.-W. Lammers and F. Mohamed Hoesein. "Bone density is associated with emphysema and air trapping on CT in smokers", in: American Thoracic Society International Conference, 2015. Abstract DOI

  6. L. Gallardo-Estrella, E. Pompe, F.A. Mohamed Hoesein, P. De Jong, B. van Ginneken, E.M. van Rikxoort, H. de Koning, M. Oudkerk and J. Lammers. "Relationship between Lung Function Parameters and CT Measurements of Emphysema, Airways, and Tracheal Collapse in Subjects with Mild COPD", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  7. B.C. Lassen, J. Kuhnigk, C. Jacobs, E.M. van Rikxoort and B. van Ginneken. "Fully Automatic Volumetric Segmentation of Pulmonary Nodules: Evaluation using the Complete LIDC/IDRI Database", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  8. M. Brink, E.M. van Rikxoort, J. Charbonnier, S.J. van Riel, C.M. Schaefer-Prokop and M. Prokop. "Iodine Mapping of the Lung Using Subtraction Imaging for Pulmonary Embolism: Technique and Initial Clinical Experience", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  9. B. van Ginneken, E.M. van Rikxoort, S.J. Lafebre, C. Jacobs, M. Schmidt, J.-M. Kuhnigk, M. Prokop, C.M. Schaefer-Prokop, J. Charbonnier, L. Hogeweg, P. Maduskar, L. Gallardo-Estrella, R. Philipsen and B. Lassen. "CIRRUS Lung: an optimized workflow for quantitative image analysis of thoracic computed tomography and chest radiography for major pulmonary diseases: chronic obstructive pulmonary disease, lung cancer and tuberculosis", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  10. C. Jacobs, B. van Ginneken, S. Fromme, M. Prokop and E.M. van Rikxoort. "Benchmarking computer-aided detection of pulmonary nodules on the recently completed publicly available LIDC/IDRI database", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  11. S.J. van Riel, E.M. van Rikxoort, C. Jacobs, S. Schalekamp, M. Prokop, B. van Ginneken, P.A. de Jong, E.T. Scholten, H.A. Gietema and C.M. Schaefer-Prokop. "Intra- and inter-reader variability of pulmonary nodule classification according to the Fleischner guidelines: clinical consequences", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  12. S.J. van Riel, C.M. Schaefer-Prokop, E.M. van Rikxoort, B. van Ginneken, M. Prokop, S. Schalekamp, C. Jacobs, P.A. de Jong, H.A. Gietema and E.T. Scholten. "Impact of section thickness on classification of pulmonary nodules into solid, part-solid, and non-solid: an observer study", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  13. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J.-M. Kuhnigk, M. Oudkerk, H. de Koning and B. van Ginneken. "Reproducibility of automated three-dimensional airway wall thickness measurements in thoracic computed tomography and influence of inspiration depth", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  14. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Automated characterization of pulmonary nodules in thoracic CT images using a segmentation-based classification system", in: European Congress of Radiology, 2013. Abstract

  15. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Non-solid, part-solid or solid? Classification of pulmonary nodules in thoracic CT by radiologists and a computer-aided diagnosis system", in: European Congress of Radiology, 2013. Abstract

  16. B.C. Lassen, M. Schmidt, E.M. van Rikxoort, B. van Ginneken, C. Jacobs, J. Kuhnigk and M. Prokop. "Automated and interactive image analysis workstation for the extraction of imaging biomarkers related to chronic obstructive pulmonary disease from thoracic computed tomography scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  17. C. Jacobs, J. Kuhnigk, E.M. van Rikxoort, T. Twellmann, P. de Jong, H. Gietema, B. Lassen, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Optimized workflow for low dose thoracic CT lung cancer screening: automated detection, measurement, temporal matching and volumetry and mass analysis, individualized prediction of cancer risk, structured reporting with follow-up recommendation", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  18. L. Gallardo-Estrella, B. van Ginneken, O.M. Mets, P. Zanen, P.A. de Jong, C.M. Schaefer-Prokop and E.M. van Rikxoort. "Trachea Shape Analysis from Inspiration and Expiration Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  19. B. Lassen, E.M. van Rikxoort, J. Kuhnigk and B. van Ginneken. "Fast and Intuitive Interactive Lung Lobe Segmentation in Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  20. E.M. van Rikxoort, B. van Ginneken, M. Schmidt, A. Lahaije, H. van Helvoort, M. Prokop and Y. Heijdra. "Dynamic Hyperinflation in COPD Patients: Is It Related to Emphysema and Airway Morphology in Inspiration and Expiration Thoracic CT?", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  21. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J. Kuhnigk and B. van Ginneken. "Automatic Quantification of Airway Dimensions in COPD: Processing Large Databases of Chest CT scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  22. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, P. Zanen, J. Kuhnigk and B. van Ginneken. "Relating Automatic Quantification of Airway Wall Thickness, Emphysema and Air Trapping in Inspiration and Expiration Chest CT Scans to COPD GOLD Stages", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  23. C. Jacobs, E.M. van Rikxoort, T. Twellmann, P. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Improved computer-aided detection of pulmonary nodules by combining a solid and subsolid nodule CAD system", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  24. L. Gallardo-Estrella, P.A. de Jong, O.M. Mets, B. van Ginneken and E.M. van Rikxoort. "Automatic classification of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  25. S. Amin, J. Goldin, M. Zeidler, E. Kleerup, P. Lu, M. Galperin-Aizenberg, E.M. van Rikxoort, D. Gjertson and D. Ross. "Air trapping on HRCT assessed by quantitative image analysis as an early predictor of bronchiolitis obliterans syndrome in lung transplant recipients", in: American Thoracic Society International Conference, 2011. Abstract

  26. D. Chong, H. Kim, E. van Rikxoort, M. Galperin, K. Yang, Y. Jung, M. McNitt-Gray, J. Goldin and M. Brown. "Reproducibility of densitometric measures of emphysema in computed tomography scans one week apart: the effect of breathhold and scanner calibration", in: American Thoracic Society International Conference, 2011. Abstract

  27. M. Galperin-Aizenberg, E.M. van Rikxoort, M.S. Brown, H. Kim, F. Abtin and J.G. Goldin. "Automatic Fissural Integrity Quantification from Chest CT Predicts Lobar Atelectasis in Endobronchial Treatment", in: American Thoracic Society International Conference, 2011. Abstract

  28. E.M. van Rikxoort, M. Galperin-Aizenberg, C. Jude, J.G. Goldin and M. Brown. "Quantifying Emphysema From Chest Computed Tomography Scans Using Integral Geometry Descriptors: Improved Performance Over Density Measures In Low Dose Scans", in: American Thoracic Society International Conference, 2011. Abstract

  29. E.M. van Rikxoort, M.Galperin-Aizenberg, F. Abtin, H.J. Kim, P. Lu, G. Shaw, J.G. Goldin and M. Brown. "Pulmonary Fissure Integrity Assessment in Subjects with Severe Emphysema: Evaluation of a Fully Automatic Method", in: American Thoracic Society International Conference, 2011. Abstract

  30. B. van Ginneken, K. Murphy, E.M. van Rikxoort, I. Išgum, B. de Hoop, M. Prokop, P.A. de Jong and H. Gietema. "Quantification of Emphysema and Small Airway Disease in COPD Patients from Lobar Analysis of Volumetric Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  31. E.M. van Rikxoort, M. Prokop, B. de Hoop, J.P.W. Pluim and B. van Ginneken. "Automatic Segmentation of the Pulmonary Lobes from Computed Tomography Chest CT Scans: Robustness Against Incomplete Fissures by Including Contextual Information", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  32. B. van Ginneken, B. de Hoop, E.M. van Rikxoort, K. Murphy and M. Prokop. "Relating Airway Morphology in Heavy Smokers to Pulmonary Function Impairment", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  33. B. van Ginneken, E.M. van Rikxoort, W. Baggerman, B. de Hoop and M. Prokop. "Automatic Extraction and Anatomical Labeling of the Airway Tree from Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  34. K. Murphy, B. van Ginneken, E.M. van Rikxoort, B. de Hoop, J.P.W. Pluim and M. Prokop. "Prediction of Obstructive Pulmonary Function by Quantitative Lobar Evaluation of Density Change between Inspiration and Expiration on Thoracic CT", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  35. E.M. van Rikxoort, B. van Ginneken, J.G. Goldin, M.S. Brown and M. Prokop. "Automatic Quantification of Completeness of Pulmonary Fissures on a Large Database", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  36. E.M. van Rikxoort, M. Prokop and B. van Ginneken. "Automatic Lung Segmentation from Chest CT Scans Using a Hybrid Algorithm Robust against Pathology", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract

  37. E.M. van Rikxoort, M. Prokop, B. de Hoop, H. Gietema and B. van Ginneken. "Automatic Estimation of Lobar and Segmental Variation of Emphysema Distribution in Chronic Smokers", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract

  38. B. van Ginneken, M.A.J. Klik, E.M. van Rikxoort, H. Gietema, J. Peters and M. Prokop. "Computer-aided diagnosis for distinguishing benign perifissural opacities from other pulmonary nodules in computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract/PDF

  39. E.M. van Rikxoort, H. Gietema, M. Prokop and B. van Ginneken. "Fully automatic segmentation of pulmonary segments from computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract


Theses

  1. E.M. van Rikxoort. "Segmentation of anatomical structures in chest CT scans", PhD thesis, Utrecht University, The Netherlands, 2009. Abstract/PDF URL


Other publications

  1. R. Beichel, M. de Bruijne, S. Kabus, A.P. Kiraly, J.M. Kuhnigk, J. McClelland, T. Kitasaka, E.M. van Rikxoort and S. Rit. "The Fifth International Workshop on Pulmonary Image Analysis", 2013. Abstract/PDF URL

  2. R. Beichel, M. de Bruijne, B. van Ginneken, S. Kabus, A. Kiraly, J.M. Kuhnigk, J. McClelland, K. Mori, E.M. van Rikxoort and S. Rit. "The Fourth International Workshop on Pulmonary Image Analysis", 2011. Abstract/PDF URL