Publications of Alessa Hering
2024
Papers in international journals
- F. Peisen, A. Gerken, A. Hering, I. Dahm, K. Nikolaou, S. Gatidis, T. Eigentler, T. Amaral, J. Moltz and A. Othman, "Can Delta Radiomics Improve the Prediction of Best Overall Response, Progression-Free Survival, and Overall Survival of Melanoma Patients Treated with Immune Checkpoint Inhibitors?", Cancers, 2024;16:2669.
- A. Hering, M. Westphal, A. Gerken, H. Almansour, M. Maurer, B. Geisler, T. Kohlbrandt, T. Eigentler, T. Amaral, N. Lessmann, S. Gatidis, H. Hahn, K. Nikolaou, A. Othman, J. Moltz and F. Peisen, "Improving assessment of lesions in longitudinal CT scans: a bi-institutional reader study on an AI-assisted registration and volumetric segmentation workflow", International Journal of Computer Assisted Radiology and Surgery, 2024.
- I. Dahm, M. Kolb, S. Altmann, K. Nikolaou, S. Gatidis, A. Othman, A. Hering, J. Moltz and F. Peisen, "Reliability of Automated RECIST 1.1 and Volumetric RECIST Target Lesion Response Evaluation in Follow-Up CT--A Multi-Center, Multi-Observer Reading Study", Cancers, 2024;16:4009.
Preprints
- H. Häntze, L. Xu, F. Dorfner, L. Donle, D. Truhn, H. Aerts, M. Prokop, B. van Ginneken, A. Hering, L. Adams and K. Bressem, "MRSegmentator: Robust Multi-Modality Segmentation of 40 Classes in MRI and CT Sequences", arXiv:2405.06463, 2024.
- A. Hering, S. de Boer, A. Saha, J. Twilt, D. Yakar, M. de Rooij, H. Huisman and J.S. Bosma, "Deformable MRI Sequence Registration for AI-based Prostate Cancer Diagnosis", arXiv:2404.09666, 2024.
- H. Häntze, L. Xu, L. Donle, F. Dorfner, A. Hering, L. Adams and K. Bressem, "Improve Cross-Modality Segmentation by Treating MRI Images as Inverted CT Scans", arXiv:2405.03713, 2024.
PhD theses
- K. Venkadesh, "AI for lung cancer screening", PhD thesis, 2024.
Other publications
- F. Falta, C. Gro\ssbr öhmer, A. Hering, A. Bigalke and M. Heinrich, "Abstract: Combined 3D Dataset for CT- and Point Cloud-based Intra-patient Lung Registration Lung250M-4B", Bildverarbeitung fur die Medizin 2024, 2024:53-53.
- T. Kohlbrandt, J. Moltz, S. Heldmann, A. Hering and J. Lellmann, "Joint Learning of Image Registration and Change Detection for Lung CT Images", Bildverarbeitung fur die Medizin 2024, 2024:46-51.
2023
Papers in international journals
- A. Hering, L. Hansen, T. Mok, A. Chung, H. Siebert, S. Hager, A. Lange, S. Kuckertz, S. Heldmann, W. Shao, S. Vesal, M. Rusu, G. Sonn, T. Estienne, M. Vakalopoulou, L. Han, Y. Huang, P. Yap, M. Brudfors, Y. Balbastre, S. Joutard, M. Modat, G. Lifshitz, D. Raviv, J. Lv, Q. Li, V. Jaouen, D. Visvikis, C. Fourcade, M. Rubeaux, W. Pan, Z. Xu, B. Jian, F. De Benetti, M. Wodzinski, N. Gunnarsson, J. Sjolund, D. Grzech, H. Qiu, Z. Li, A. Thorley, J. Duan, C. Grosbrohmer, A. Hoopes, I. Reinertsen, Y. Xiao, B. Landman, Y. Huo, K. Murphy, N. Lessmann, B. van Ginneken, A. Dalca and M. Heinrich, "Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning", IEEE Transactions on Medical Imaging, 2023;42:697-712.
- F. Peisen, A. Gerken, A. Hering, I. Dahm, K. Nikolaou, S. Gatidis, T. Eigentler, T. Amaral, J. Moltz and A. Othman, "Can Whole-Body Baseline CT Radiomics Add Information to the Prediction of Best Response, Progression-Free Survival, and Overall Survival of Stage IV Melanoma Patients Receiving First-Line Targeted Therapy: A Retrospective Register Study", Diagnostics, 2023;13:3210.
Papers in conference proceedings
- M. Eisenmann, A. Reinke, V. Weru, M. Tizabi, F. Isensee, T. Adler, S. Ali, V. Andrearczyk, M. Aubreville, U. Baid, S. Bakas, N. Balu, S. Bano, J. Bernal, S. Bodenstedt, A. Casella, V. Cheplygina, M. Daum, M. De Bruijne, A. Depeursinge, R. Dorent, J. Egger, D. Ellis, S. Engelhardt, M. Ganz, N. Ghatwary, G. Girard, P. Godau, A. Gupta, L. Hansen, K. Harada, M. Heinrich, N. Heller, A. Hering, A. Huaulmé, P. Jannin, A. Kavur, O. Kodym, M. Kozubek, J. Li, H. Li, J. Ma, C. Martín-Isla, B. Menze, A. Noble, V. Oreiller, N. Padoy, S. Pati, K. Payette, T. Rädsch, J. Rafael-Patiño, V. Bawa, S. Speidel, C. Sudre, K. Van Wijnen, M. Wagner, D. Wei, A. Yamlahi, M. Yap, C. Yuan, M. Zenk, A. Zia, D. Zimmerer, D. Aydogan, B. Bhattarai, L. Bloch, R. Brüngel, J. Cho, C. Choi, Q. Dou, I. Ezhov, C. Friedrich, C. Fuller, R. Gaire, A. Galdran, Á. Faura, M. Grammatikopoulou, S. Hong, M. Jahanifar, I. Jang, A. Kadkhodamohammadi, I. Kang, F. Kofler, S. Kondo, H. Kuijf, M. Li, M. Luu, T. Martinčič, P. Morais, M. Naser, B. Oliveira, D. Owen, S. Pang, J. Park, S. Park, S. Plotka, E. Puybareau, N. Rajpoot, K. Ryu, N. Saeed, A. Shephard, P. Shi, D. Stepec, R. Subedi, G. Tochon, H. Torres, H. Urien, J. Vilaça, K. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, B. Wiestler, M. Wodzinski, F. Xia, J. Xie, Z. Xiong, S. Yang, Y. Yang, Z. Zhao, K. Maier-Hein, P. Jäger, A. Kopp-Schneider and L. Maier-Hein, "Why is the Winner the Best?", 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2023.
- N. Frohwitter, A. Hering, R. Möller and M. Hartwig, "Evaluating the Effects of a Priori Deep Learning Image Synthesis on Multi-Modal MR-to-CT Image Registration Performance", Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies, 2023.
Other publications
- L. Canalini, J. Klein, A. Gerken, S. Heldmann, A. Hering and H. Hahn, "Iterative Method to Register Longitudinal MRI Acquisitions in Neurosurgical Context", Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2023:262-272.
2022
Papers in international journals
- L. Canalini, J. Klein, D. Waldmannstetter, F. Kofler, S. Cerri, A. Hering, S. Heldmann, S. Schlaeger, B. Menze, B. Wiestler, J. Kirschke and H. Hahn, "Quantitative evaluation of the influence of multiple MRI sequences and of pathological tissues on the registration of longitudinal data acquired during brain tumor treatment", Frontiers in Neuroimaging, 2022;1.
- H. Roth, Z. Xu, C. Tor-Díez, R. Sanchez Jacob, J. Zember, J. Molto, W. Li, S. Xu, B. Turkbey, E. Turkbey, D. Yang, A. Harouni, N. Rieke, S. Hu, F. Isensee, C. Tang, Q. Yu, J. Sölter, T. Zheng, V. Liauchuk, Z. Zhou, J. Moltz, B. Oliveira, Y. Xia, K. Maier-Hein, Q. Li, A. Husch, L. Zhang, V. Kovalev, L. Kang, A. Hering, J. Vilaça, M. Flores, D. Xu, B. Wood and M. Linguraru, "Rapid artificial intelligence solutions in a pandemic--The COVID-19-20 Lung CT Lesion Segmentation Challenge", Medical Image Analysis, 2022;82:102605.
- F. Peisen, A. Hänsch, A. Hering, A. Brendlin, S. Afat, K. Nikolaou, S. Gatidis, T. Eigentler, T. Amaral, J. Moltz and A. Othman, "Combination of Whole-Body Baseline CT Radiomics and Clinical Parameters to Predict Response and Survival in a Stage-IV Melanoma Cohort Undergoing Immunotherapy", Cancers, 2022;14:2992.
Preprints
- M. Eisenmann, A. Reinke, V. Weru, M. Tizabi, F. Isensee, T. Adler, P. Godau, V. Cheplygina, M. Kozubek, S. Ali, A. Gupta, J. Kybic, A. Noble, C. de Solórzano, S. Pachade, C. Petitjean, D. Sage, D. Wei, E. Wilden, D. Alapatt, V. Andrearczyk, U. Baid, S. Bakas, N. Balu, S. Bano, V. Bawa, J. Bernal, S. Bodenstedt, A. Casella, J. Choi, O. Commowick, M. Daum, A. Depeursinge, R. Dorent, J. Egger, H. Eichhorn, S. Engelhardt, M. Ganz, G. Girard, L. Hansen, M. Heinrich, N. Heller, A. Hering, A. Huaulmé, H. Kim, B. Landman, H. Li, J. Li, J. Ma, A. Martel, C. Martín-Isla, B. Menze, C. Nwoye, V. Oreiller, N. Padoy, S. Pati, K. Payette, C. Sudre, K. van Wijnen, A. Vardazaryan, T. Vercauteren, M. Wagner, C. Wang, M. Yap, Z. Yu, C. Yuan, M. Zenk, A. Zia, D. Zimmerer, R. Bao, C. Choi, A. Cohen, O. Dzyubachyk, A. Galdran, T. Gan, T. Guo, P. Gupta, M. Haithami, E. Ho, I. Jang, Z. Li, Z. Luo, F. Lux, S. Makrogiannis, D. Müller, Y. Oh, S. Pang, C. Pape, G. Polat, C. Reed, K. Ryu, T. Scherr, V. Thambawita, H. Wang, X. Wang, K. Xu, H. Yeh, D. Yeo, Y. Yuan, Y. Zeng, X. Zhao, J. Abbing, J. Adam, N. Adluru, N. Agethen, S. Ahmed, Y. Khalil, M. Alenyà, E. Alhoniemi, C. An, T. Anwar, T. Arega, N. Avisdris, D. Aydogan, Y. Bai, M. Calisto, B. Basaran, M. Beetz, C. Bian, H. Bian, K. Blansit, L. Bloch, R. Bohnsack, S. Bosticardo, J. Breen, M. Brudfors, R. Brüngel, M. Cabezas, A. Cacciola, Z. Chen, Y. Chen, D. Chen, M. Cho, M. Choi, C. Xie, D. Cobzas, J. Cohen-Adad, J. Acero, S. Das, M. de Oliveira, H. Deng, G. Dong, L. Doorenbos, C. Efird, S. Escalera, D. Fan, M. Serj, A. Fenneteau, L. Fidon, P. Filipiak, R. Finzel, N. Freitas, C. Friedrich, M. Fulton, F. Gaida, F. Galati, C. Galazis, C. Gan, Z. Gao, S. Gao, M. Gazda, B. Gerats, N. Getty, A. Gibicar, R. Gifford, S. Gohil, M. Grammatikopoulou, D. Grzech, O. Güley, T. Günnemann, C. Guo, S. Guy, H. Ha, L. Han, I. Han, A. Hatamizadeh, T. He, J. Heo, S. Hitziger, S. Hong, S. Hong, R. Huang, Z. Huang, M. Huellebrand, S. Huschauer, M. Hussain, T. Inubushi, E. Polat, M. Jafaritadi, S. Jeong, B. Jian, Y. Jiang, Z. Jiang, Y. Jin, S. Joshi, A. Kadkhodamohammadi, R. Kamraoui, I. Kang, J. Kang, D. Karimi, A. Khademi, M. Khan, S. Khan, R. Khantwal, K. Kim, T. Kline, S. Kondo, E. Kontio, A. Krenzer, A. Kroviakov, H. Kuijf, S. Kumar, F. La Rosa, A. Lad, D. Lee, M. Lee, C. Lena, H. Li, L. Li, X. Li, F. Liao, K. Liao, A. Oliveira, C. Lin, S. Lin, A. Linardos, M. Linguraru, H. Liu, T. Liu, D. Liu, Y. Liu, J. Lourenço-Silva, J. Lu, J. Lu, I. Luengo, C. Lund, H. Luu, Y. Lv, Y. Lv, U. Macar, L. Maechler, S. L., K. Marshall, M. Mazher, R. McKinley, A. Medela, F. Meissen, M. Meng, D. Miller, S. Mirjahanmardi, A. Mishra, S. Mitha, H. Mohy-ud-Din, T. Mok, G. Murugesan, E. Karthik, S. Nalawade, J. Nalepa, M. Naser, R. Nateghi, H. Naveed, Q. Nguyen, C. Quoc, B. Nichyporuk, B. Oliveira, D. Owen, J. Pal, J. Pan, W. Pan, W. Pang, B. Park, V. Pawar, K. Pawar, M. Peven, L. Philipp, T. Pieciak, S. Plotka, M. Plutat, F. Pourakpour, D. Preloznik, K. Punithakumar, A. Qayyum, S. Queirós, A. Rahmim, S. Razavi, J. Ren, M. Rezaei, J. Rico, Z. Rieu, M. Rink, J. Roth, Y. Ruiz-Gonzalez, N. Saeed, A. Saha, M. Salem, R. Sanchez-Matilla, K. Schilling, W. Shao, Z. Shen, R. Shi, P. Shi, D. Sobotka, T. Soulier, B. Fadida, D. Stoyanov, T. Mun, X. Sun, R. Tao, F. Thaler, A. Théberge, F. Thielke, H. Torres, K. Wahid, J. Wang, Y. Wang, W. Wang, X. Wang, J. Wen, N. Wen, M. Wodzinski, Y. Wu, F. Xia, T. Xiang, C. Xiaofei, L. Xu, T. Xue, Y. Yang, L. Yang, K. Yao, H. Yao, A. Yazdani, M. Yip, H. Yoo, F. Yousefirizi, S. Yu, L. Yu, J. Zamora, R. Zeineldin, D. Zeng, J. Zhang, B. Zhang, J. Zhang, F. Zhang, H. Zhang, Z. Zhao, Z. Zhao, J. Zhao, C. Zhao, Q. Zheng, Y. Zhi, Z. Zhou, B. Zou, K. Maier-Hein, P. Jäger, A. Kopp-Schneider and L. Maier-Hein, "Biomedical image analysis competitions: The state of current participation practice", arXiv:2212.08568, 2022.
PhD theses
- A. Hering, "Deep-Learning-Based Image Registration and Tumor Follow-Up Analysis", PhD thesis, 2022.
Other publications
- A. Hering, A. Lange, S. Heldmann, S. Häger and S. Kuckertz, "Fraunhofer MEVIS Image Registration Solutions for the Learn2Reg 2021 Challenge", Biomedical Image Registration, Domain Generalisation and Out-of-Distribution Analysis, 2022:147-152.
2021
Papers in international journals
- A. Hering, S. Hager, J. Moltz, N. Lessmann, S. Heldmann and B. van Ginneken, "CNN-based Lung CT Registration with Multiple Anatomical Constraints", Medical Image Analysis, 2021;72:102139.
Papers in conference proceedings
- A. Hering, F. Peisen, T. Amaral, S. Gatidis, T. Eigentler, A. Othman and J. Moltz, "Whole-Body Soft-Tissue Lesion Tracking and Segmentation in Longitudinal CT Imaging Studies", Medical Imaging with Deep Learning, 2021.
- S. Häger, S. Heldmann, A. Hering, S. Kuckertz and A. Lange, "Variable Fraunhofer MEVIS RegLib Comprehensively Applied to Learn2Reg Challenge", Segmentation, Classification, and Registration of Multi-modality Medical Imaging Data. MICCAI 2020, 2021;12587:74-79.
2020
Papers in international journals
- M. Sieren, F. Brenne, A. Hering, H. Kienapfel, N. Gebauer, T. Oechtering, A. Fürschke, F. Wegner, E. Stahlberg, S. Heldmann, J. Barkhausen and A. Frydrychowicz, "Rapid study assessment in follow-up whole-body computed tomography in patients with multiple myeloma using a dedicated bone subtraction software", European Radiology, 2020;30:3198-3209.
Papers in conference proceedings
- B. Lassen-Schmidt, A. Hering, S. Krass and H. Meine, "Automatic segmentation of the pulmonary lobes with a 3D u-net and optimized loss function", Medical Imaging with Deep Learning, 2020.
- A. Hering and S. Heldmann, "mlVIRNET: Improved Deep Learning Registration Using a Coarse to Fine Approach to Capture all Levels of Motion", Bildverarbeitung für die Medizin, 2020:175.
2019
Papers in international journals
- A. Hering, S. Kuckertz, S. Heldmann and M. Heinrich, "Memory-efficient 2.5D convolutional transformer networks for multi-modal deformable registration with weak label supervision applied to whole-heart CT and MRI scans", Computer Assisted Radiology and Surgery, 2019.
Papers in conference proceedings
- A. Hering, B. van Ginneken and S. Heldmann, "mlVIRNET: Multilevel Variational Image Registration Network", Medical Image Computing and Computer-Assisted Intervention, 2019;11769:257-265.
- H. Meine and A. Hering, "Efficient prealignment of CT scans for registration through a bodypart regressor", Medical Imaging with Deep Learning, 2019.
- A. Hering and S. Heldmann, "Unsupervised Learning for Large Motion Thoracic CT Follow-Up Registration", Medical Imaging, 2019;10949:109491B.
Other publications
- A. Hering, S. Kuckertz, S. Heldmann and M. Heinrich, "Enhancing Label-Driven Deep Deformable Image Registration with Local Distance Metrics for State-of-the-Art Cardiac Motion Tracking", Informatik aktuell, 2019:309-314.