Publications of Hans Pinckaers

Papers in international journals

1. S. Dooper, H. Pinckaers, W. Aswolinskiy, K. Hebeda, S. Jarkman, J. van der Laak and G. Litjens, "Gigapixel end-to-end training using streaming and attention", Medical Image Analysis, 2023;88:102881.
   Abstract DOI PMID Cited by ~3
2. H. Pinckaers, J. van Ipenburg, J. Melamed, A. De Marzo, E. Platz, B. van Ginneken, J. van der Laak and G. Litjens, "Predicting biochemical recurrence of prostate cancer with artificial intelligence", Communications Medicine, 2022;2:64.
   Abstract DOI PMID Cited by ~9
3. W. Bulten, K. Kartasalo, P. Chen, P. Strom, H. Pinckaers, K. Nagpal, Y. Cai, D. Steiner, H. van Boven, R. Vink, C. de Hulsbergen-van Kaa, J. van der Laak, M. Amin, A. Evans, T. van der Kwast, R. Allan, P. Humphrey, H. Gronberg, H. Samaratunga, B. Delahunt, T. Tsuzuki, T. Hakkinen, L. Egevad, M. Demkin, S. Dane, F. Tan, M. Valkonen, G. Corrado, L. Peng, C. Mermel, P. Ruusuvuori, G. Litjens, M. Eklund, A. Brilhante, A. Cakir, X. Farre, K. Geronatsiou, V. Molinie, G. Pereira, P. Roy, G. Saile, P. Salles, E. Schaafsma, J. Tschui, J. Billoch-Lima, E. Pereira, M. Zhou, S. He, S. Song, Q. Sun, H. Yoshihara, T. Yamaguchi, K. Ono, T. Shen, J. Ji, A. Roussel, K. Zhou, T. Chai, N. Weng, D. Grechka, M. Shugaev, R. Kiminya, V. Kovalev, D. Voynov, V. Malyshev, E. Lapo, M. Campos, N. Ota, S. Yamaoka, Y. Fujimoto, K. Yoshioka, J. Juvonen, M. Tukiainen, A. Karlsson, R. Guo, C. Hsieh, I. Zubarev, H. Bukhar, W. Li, J. Li, W. Speier, C. Arnold, K. Kim, B. Bae, Y. Kim, H. Lee, J. Park and the PANDA challenge consortium, "Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge", Nature Medicine, 2022.
   Abstract DOI PMID Cited by ~191
4. L. van Eekelen, H. Pinckaers, M. van den Brand, K. Hebeda and G. Litjens, "Using deep learning for quantification of cellularity and cell lineages in bone marrow biopsies and comparison to normal age-related variation.", Pathology, 2021.
   Abstract DOI PMID Download Cited by ~7
5. K. Kartasalo, W. Bulten, B. Delahunt, P. Chen, H. Pinckaers, H. Olsson, X. Ji, N. Mulliqi, H. Samaratunga, T. Tsuzuki, J. Lindberg, M. Rantalainen, C. Wahlby, G. Litjens, P. Ruusuvuori, L. Egevad and M. Eklund, "Artificial Intelligence for Diagnosis and Gleason Grading of Prostate Cancer in Biopsies-Current Status and Next Steps.", European Urology Focus, 2021;7(4):687-691.
   Abstract DOI PMID Download Cited by ~17
6. H. Pinckaers, W. Bulten, J. der Van Laak and G. Litjens, "Detection of prostate cancer in whole-slide images through end-to-end training with image-level labels.", IEEE Transactions on Medical Imaging, 2021.
   Abstract DOI PMID Download Cited by ~49
7. H. Pinckaers, B. van Ginneken and G. Litjens, "Streaming convolutional neural networks for end-to-end learning with multi-megapixel images", IEEE Transactions on Pattern Analysis and Machine Intelligence, 2020.
   Abstract DOI PMID arXiv Cited by ~69
8. W. Bulten, H. Pinckaers, H. van Boven, R. Vink, T. de Bel, B. van Ginneken, J. van der Laak, C. de Hulsbergen-van Kaa and G. Litjens, "Automated deep-learning system for Gleason grading of prostate cancer using biopsies: a diagnostic study", Lancet Oncology, 2020;21(2):233-241.
   Abstract DOI PMID arXiv Algorithm Download Cited by ~459
9. Z. Swiderska-Chadaj, H. Pinckaers, M. van Rijthoven, M. Balkenhol, M. Melnikova, O. Geessink, Q. Manson, M. Sherman, A. Polonia, J. Parry, M. Abubakar, G. Litjens, J. van der Laak and F. Ciompi, "Learning to detect lymphocytes in immunohistochemistry with deep learning", Medical Image Analysis, 2019;58:101547.
   Abstract DOI PMID Cited by ~106
10. M. Balkenhol, D. Tellez, W. Vreuls, P. Clahsen, H. Pinckaers, F. Ciompi, P. Bult and J. van der Laak, "Deep learning assisted mitotic counting for breast cancer", Laboratory Investigation, 2019.
    Abstract DOI PMID Cited by ~72

Preprints

1. H. Pinckaers and G. Litjens, "Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands", arXiv:1910.10470, 2019.
   Abstract DOI arXiv Cited by ~28

Papers in conference proceedings

1. D. Geijs, H. Pinckaers, A. Amir and G. Litjens, "End-to-end classification on basal-cell carcinoma histopathology whole-slides images", Medical Imaging, 2021;11603:1160307.
   Abstract DOI Cited by ~2
2. L. van Eekelen, H. Pinckaers, K. Hebeda and G. Litjens, "Multi-class semantic cell segmentation and classification of aplasia in bone marrow histology images", Medical Imaging, 2020;11320:113200B.
   Abstract DOI Cited by ~1
3. H. Pinckaers, W. Bulten and G. Litjens, "High resolution whole prostate biopsy classification using streaming stochastic gradient descent", Medical Imaging, 2019(1).
   Abstract DOI Cited by ~3
4. J. Bokhorst, H. Pinckaers, P. van Zwam, I. Nagetgaal, J. van der Laak and F. Ciompi, "Learning from sparsely annotated data for semantic segmentation in histopathology images", Medical Imaging with Deep Learning, 2019;102:81-94.
   Abstract Url Cited by ~36
5. Z. Swiderska-Chadaj, H. Pinckaers, M. van Rijthoven, M. Balkenhol, M. Melnikova, O. Geessink, Q. Manson, G. Litjens, J. van der Laak and F. Ciompi, "Convolutional Neural Networks for Lymphocyte detection in Immunohistochemically Stained Whole-Slide Images", Medical Imaging with Deep Learning, 2018.
   Abstract Url Cited by ~12

Abstracts

1. W. Bulten, H. Pinckaers, C. Hulsbergen-van de Kaa and G. Litjens, "Automated Gleason Grading of Prostate Biopsies Using Deep Learning", United States and Canadian Academy of Pathology (USCAP) 108th Annual Meeting, 2019.
   Abstract Cited by ~122
2. H. Pinckaers and G. Litjens, "Training convolutional neural networks with megapixel images", Medical Imaging with Deep Learning, 2018.
   Abstract arXiv Cited by ~12